RNA–Protein interactions for RNA: ENST00000600970.5

USE1-208, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 5

Gene USE1, Length 826 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-208ENST00000600970 RUSC2Q8N2Y8 1516 aa30■■■□□ 2.39
USE1-208ENST00000600970 ABCC10Q5T3U5 1492 aa29.88■■■□□ 2.37
USE1-208ENST00000600970 FAM69CQ0P6D2 419 aa29.86■■■□□ 2.37
USE1-208ENST00000600970 MAPKBP1O60336 1514 aa29.86■■■□□ 2.37
USE1-208ENST00000600970 NPM1P06748 294 aaKnown RBP eCLIP29.85■■■□□ 2.37
USE1-208ENST00000600970 ADCY10Q96PN6 1610 aa29.85■■■□□ 2.37
USE1-208ENST00000600970 DIP2BQ9P265 1576 aa29.81■■■□□ 2.36
USE1-208ENST00000600970 KIAA0586Q9BVV6 1533 aa29.78■■■□□ 2.36
USE1-208ENST00000600970 IGF1RP08069 1367 aa29.75■■■□□ 2.35
USE1-208ENST00000600970 CUL7Q14999 1698 aa29.73■■■□□ 2.35
USE1-208ENST00000600970 KIF27Q86VH2 1401 aa29.69■■■□□ 2.34
USE1-208ENST00000600970 KDM6BO15054 1643 aa29.66■■■□□ 2.34
USE1-208ENST00000600970 TSPOAP1O95153 1857 aa29.65■■■□□ 2.34
USE1-208ENST00000600970 PTPRGP23470 1445 aa29.57■■■□□ 2.32
USE1-208ENST00000600970 CARMIL1Q5VZK9 1371 aa29.53■■■□□ 2.32
USE1-208ENST00000600970 KDM4FA0A1W2PPD8 638 aa29.52■■■□□ 2.32
USE1-208ENST00000600970 TTBK1Q5TCY1 1321 aaPredicted RBP29.5■■■□□ 2.31
USE1-208ENST00000600970 TNIKQ9UKE5 1360 aa29.5■■■□□ 2.31
USE1-208ENST00000600970 CARMIL2Q6F5E8 1435 aa29.48■■■□□ 2.31
USE1-208ENST00000600970 ABCC2Q92887 1545 aa29.48■■■□□ 2.31
USE1-208ENST00000600970 IQGAP2Q13576 1575 aa29.45■■■□□ 2.31
USE1-208ENST00000600970 ASXL2Q76L83 1435 aa29.42■■■□□ 2.3
USE1-208ENST00000600970 PPRC1Q5VV67 1664 aaKnown RBP29.41■■■□□ 2.3
USE1-208ENST00000600970 GLI2P10070 1586 aa29.4■■■□□ 2.3
USE1-208ENST00000600970 PLB1Q6P1J6 1458 aa29.4■■■□□ 2.3
USE1-208ENST00000600970 UHRF1BP1LA0JNW5 1464 aa29.38■■■□□ 2.29
USE1-208ENST00000600970 UACAQ9BZF9 1416 aa29.35■■■□□ 2.29
USE1-208ENST00000600970 DISP1Q96F81 1524 aa29.35■■■□□ 2.29
USE1-208ENST00000600970 KDM5BQ9UGL1 1544 aa29.26■■■□□ 2.27
USE1-208ENST00000600970 UGGT2Q9NYU1 1516 aa29.25■■■□□ 2.27
USE1-208ENST00000600970 EPRSP07814 1512 aaKnown RBP29.25■■■□□ 2.27
USE1-208ENST00000600970 MAP3K4Q9Y6R4 1608 aa29.24■■■□□ 2.27
USE1-208ENST00000600970 RAPGEF2Q9Y4G8 1499 aa29.23■■■□□ 2.27
USE1-208ENST00000600970 ZCCHC11Q5TAX3 1644 aaKnown RBP29.23■■■□□ 2.27
USE1-208ENST00000600970 COL17A1Q9UMD9 1497 aaPredicted RBP29.21■■■□□ 2.27
USE1-208ENST00000600970 KIAA0556O60303 1618 aa29.2■■■□□ 2.27
USE1-208ENST00000600970 ADGRL1O94910 1474 aa29.19■■■□□ 2.26
USE1-208ENST00000600970 TEX14Q8IWB6 1497 aa29.15■■■□□ 2.26
USE1-208ENST00000600970 CTTNBP2Q8WZ74 1663 aa29.07■■■□□ 2.24
USE1-208ENST00000600970 WDR7Q9Y4E6 1490 aa29.06■■■□□ 2.24
USE1-208ENST00000600970 ILDR1Q86SU0 546 aaPredicted RBP29.01■■■□□ 2.23
USE1-208ENST00000600970 ABCA8O94911 1581 aa28.96■■■□□ 2.23
USE1-208ENST00000600970 CFAP43Q8NDM7 1665 aa28.96■■■□□ 2.23
USE1-208ENST00000600970 GOLGA3Q08378 1498 aa28.96■■■□□ 2.23
USE1-208ENST00000600970 MAGI3Q5TCQ9 1506 aa28.94■■■□□ 2.22
USE1-208ENST00000600970 CD109Q6YHK3 1445 aa28.94■■■□□ 2.22
USE1-208ENST00000600970 HECW2Q9P2P5 1572 aa28.93■■■□□ 2.22
USE1-208ENST00000600970 KCNH8Q96L42 1107 aa28.9■■■□□ 2.22
USE1-208ENST00000600970 PRXQ9BXM0 1461 aa28.83■■■□□ 2.21
USE1-208ENST00000600970 KIF21BO75037 1637 aa28.77■■■□□ 2.2
USE1-208ENST00000600970 ARAP3Q8WWN8 1544 aa28.72■■■□□ 2.19
USE1-208ENST00000600970 ATP10BO94823 1461 aa28.72■■■□□ 2.19
USE1-208ENST00000600970 ARID3CA6NKF2 412 aa28.7■■■□□ 2.18
USE1-208ENST00000600970 P3H3Q8IVL6 736 aa28.68■■■□□ 2.18
USE1-208ENST00000600970 ABCA9Q8IUA7 1624 aa28.66■■■□□ 2.18
USE1-208ENST00000600970 FAM9AQ8IZU1 332 aaPredicted RBP28.65■■■□□ 2.18
USE1-208ENST00000600970 SAMD9Q5K651 1589 aa28.6■■■□□ 2.17
USE1-208ENST00000600970 PHLDB1Q86UU1 1377 aa28.6■■■□□ 2.17
USE1-208ENST00000600970 RAPGEF6Q8TEU7 1601 aa28.58■■■□□ 2.17
USE1-208ENST00000600970 ADAMTSL3P82987 1691 aa28.55■■■□□ 2.16
USE1-208ENST00000600970 RAPGEF3O95398 923 aa28.53■■■□□ 2.16
USE1-208ENST00000600970 NEO1Q92859 1461 aa28.53■■■□□ 2.16
USE1-208ENST00000600970 PTPRMP28827 1452 aa28.51■■■□□ 2.15
USE1-208ENST00000600970 FRMPD1Q5SYB0 1578 aa28.5■■■□□ 2.15
USE1-208ENST00000600970 CSRNP3Q8WYN3 585 aa28.49■■■□□ 2.15
USE1-208ENST00000600970 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.47■■■□□ 2.15
USE1-208ENST00000600970 HNRNPUL2Q1KMD3 747 aaKnown RBP28.47■■■□□ 2.15
USE1-208ENST00000600970 BCORL1Q5H9F3 1711 aa28.46■■■□□ 2.15
USE1-208ENST00000600970 NUP153P49790 1475 aaKnown RBP28.45■■■□□ 2.14
USE1-208ENST00000600970 MADDQ8WXG6 1647 aa28.4■■■□□ 2.14
USE1-208ENST00000600970 FHOD3Q2V2M9 1422 aa28.37■■■□□ 2.13
USE1-208ENST00000600970 FBXO41Q8TF61 875 aa28.37■■■□□ 2.13
USE1-208ENST00000600970 ARID4BQ4LE39 1312 aaPredicted RBP28.37■■■□□ 2.13
USE1-208ENST00000600970 RANGAP1P46060 587 aaPredicted RBP28.36■■■□□ 2.13
USE1-208ENST00000600970 RICTORQ6R327 1708 aa28.35■■■□□ 2.13
USE1-208ENST00000600970 ARHGEF40Q8TER5 1519 aa28.34■■■□□ 2.13
USE1-208ENST00000600970 PCF11O94913 1555 aaKnown RBP28.33■■■□□ 2.12
USE1-208ENST00000600970 PLEKHD1A6NEE1 506 aa28.32■■■□□ 2.12
USE1-208ENST00000600970 DENND4BO75064 1496 aaPredicted RBP28.32■■■□□ 2.12
USE1-208ENST00000600970 RIMS1Q86UR5 1692 aaKnown RBP28.3■■■□□ 2.12
USE1-208ENST00000600970 AKNAQ7Z591 1439 aa28.3■■■□□ 2.12
USE1-208ENST00000600970 CFAP74Q9C0B2 1584 aa28.29■■■□□ 2.12
USE1-208ENST00000600970 LMTK3Q96Q04 1460 aa28.29■■■□□ 2.12
USE1-208ENST00000600970 EEA1Q15075 1411 aa28.29■■■□□ 2.12
USE1-208ENST00000600970 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.28■■■□□ 2.12
USE1-208ENST00000600970 FANCAO15360 1455 aa28.27■■■□□ 2.12
USE1-208ENST00000600970 TTC37Q6PGP7 1564 aa28.24■■■□□ 2.11
USE1-208ENST00000600970 EFCAB5A4FU69 1503 aa28.22■■■□□ 2.11
USE1-208ENST00000600970 ZMYM4Q5VZL5 1548 aa28.22■■■□□ 2.11
USE1-208ENST00000600970 SIGLEC1Q9BZZ2 1709 aa28.21■■■□□ 2.11
USE1-208ENST00000600970 ZFYVE16Q7Z3T8 1539 aa28.18■■■□□ 2.1
USE1-208ENST00000600970 YEATS2Q9ULM3 1422 aa28.17■■■□□ 2.1
USE1-208ENST00000600970 POGZQ7Z3K3 1410 aa28.16■■■□□ 2.1
USE1-208ENST00000600970 CDK13Q14004 1512 aaKnown RBP28.15■■■□□ 2.1
USE1-208ENST00000600970 MAGI2Q86UL8 1455 aa28.14■■■□□ 2.09
USE1-208ENST00000600970 HECW1Q76N89 1606 aa28.14■■■□□ 2.09
USE1-208ENST00000600970 PLPPR3Q6T4P5 718 aa28.11■■■□□ 2.09
USE1-208ENST00000600970 HSPA2P54652 639 aa28.1■■■□□ 2.09
USE1-208ENST00000600970 FER1L4A9Z1Z3 1794 aa28.09■■■□□ 2.09
USE1-208ENST00000600970 PLCH2O75038 1416 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms