RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 ABCC10Q5T3U5 1492 aa15.31■□□□□ 0.04
TRIM28-214ENST00000600840 DIP2BQ9P265 1576 aa15.31■□□□□ 0.04
TRIM28-214ENST00000600840 KDM6BO15054 1643 aa15.3■□□□□ 0.04
TRIM28-214ENST00000600840 TSPOAP1O95153 1857 aa15.29■□□□□ 0.04
TRIM28-214ENST00000600840 FHAD1B1AJZ9 1412 aa15.28■□□□□ 0.04
TRIM28-214ENST00000600840 MAPKBP1O60336 1514 aa15.26■□□□□ 0.03
TRIM28-214ENST00000600840 ADCY10Q96PN6 1610 aa15.25■□□□□ 0.03
TRIM28-214ENST00000600840 ERICH3Q5RHP9 1530 aa15.24■□□□□ 0.03
TRIM28-214ENST00000600840 JPH4Q96JJ6 628 aa15.22■□□□□ 0.03
TRIM28-214ENST00000600840 RUSC2Q8N2Y8 1516 aa15.22■□□□□ 0.03
TRIM28-214ENST00000600840 NPM1P06748 294 aaKnown RBP eCLIP15.19■□□□□ 0.02
TRIM28-214ENST00000600840 ADGRL1O94910 1474 aa15.13■□□□□ 0.01
TRIM28-214ENST00000600840 IGF1RP08069 1367 aa15.11■□□□□ 0.01
TRIM28-214ENST00000600840 HECW2Q9P2P5 1572 aa15.11■□□□□ 0.01
TRIM28-214ENST00000600840 PPRC1Q5VV67 1664 aaKnown RBP15.1■□□□□ 0.01
TRIM28-214ENST00000600840 KIF27Q86VH2 1401 aa15.07■□□□□ 0
TRIM28-214ENST00000600840 TTBK1Q5TCY1 1321 aaPredicted RBP15.03■□□□□ -0
TRIM28-214ENST00000600840 CUL7Q14999 1698 aa15.03■□□□□ -0
TRIM28-214ENST00000600840 COL17A1Q9UMD9 1497 aaPredicted RBP15.01□□□□□ -0.01
TRIM28-214ENST00000600840 KIAA0586Q9BVV6 1533 aa15.01□□□□□ -0.01
TRIM28-214ENST00000600840 CARMIL1Q5VZK9 1371 aa14.99□□□□□ -0.01
TRIM28-214ENST00000600840 ASXL2Q76L83 1435 aa14.99□□□□□ -0.01
TRIM28-214ENST00000600840 GLI2P10070 1586 aa14.98□□□□□ -0.01
TRIM28-214ENST00000600840 ABCC2Q92887 1545 aa14.97□□□□□ -0.01
TRIM28-214ENST00000600840 PTPRGP23470 1445 aa14.97□□□□□ -0.01
TRIM28-214ENST00000600840 MAP3K4Q9Y6R4 1608 aa14.94□□□□□ -0.02
TRIM28-214ENST00000600840 PLB1Q6P1J6 1458 aa14.93□□□□□ -0.02
TRIM28-214ENST00000600840 TNIKQ9UKE5 1360 aa14.89□□□□□ -0.03
TRIM28-214ENST00000600840 EPRSP07814 1512 aaKnown RBP14.89□□□□□ -0.03
TRIM28-214ENST00000600840 CHIC1Q5VXU3 224 aa14.88□□□□□ -0.03
TRIM28-214ENST00000600840 IQGAP2Q13576 1575 aa14.87□□□□□ -0.03
TRIM28-214ENST00000600840 UHRF1BP1LA0JNW5 1464 aa14.86□□□□□ -0.03
TRIM28-214ENST00000600840 ZCCHC11Q5TAX3 1644 aaKnown RBP14.85□□□□□ -0.03
TRIM28-214ENST00000600840 CARMIL2Q6F5E8 1435 aa14.85□□□□□ -0.03
TRIM28-214ENST00000600840 TEX14Q8IWB6 1497 aa14.85□□□□□ -0.03
TRIM28-214ENST00000600840 RAPGEF2Q9Y4G8 1499 aa14.85□□□□□ -0.03
TRIM28-214ENST00000600840 FBXO41Q8TF61 875 aa14.85□□□□□ -0.03
TRIM28-214ENST00000600840 UACAQ9BZF9 1416 aa14.84□□□□□ -0.03
TRIM28-214ENST00000600840 DISP1Q96F81 1524 aa14.84□□□□□ -0.03
TRIM28-214ENST00000600840 KDM5BQ9UGL1 1544 aa14.82□□□□□ -0.04
TRIM28-214ENST00000600840 KIF21BO75037 1637 aa14.82□□□□□ -0.04
TRIM28-214ENST00000600840 UGGT2Q9NYU1 1516 aa14.78□□□□□ -0.04
TRIM28-214ENST00000600840 KIAA0556O60303 1618 aa14.75□□□□□ -0.05
TRIM28-214ENST00000600840 WDR7Q9Y4E6 1490 aa14.75□□□□□ -0.05
TRIM28-214ENST00000600840 CTTNBP2Q8WZ74 1663 aa14.74□□□□□ -0.05
TRIM28-214ENST00000600840 PRXQ9BXM0 1461 aa14.74□□□□□ -0.05
TRIM28-214ENST00000600840 CFAP43Q8NDM7 1665 aa14.72□□□□□ -0.05
TRIM28-214ENST00000600840 CD109Q6YHK3 1445 aa14.7□□□□□ -0.06
TRIM28-214ENST00000600840 MAGI3Q5TCQ9 1506 aa14.7□□□□□ -0.06
TRIM28-214ENST00000600840 ADAMTSL3P82987 1691 aa14.68□□□□□ -0.06
TRIM28-214ENST00000600840 KCNH8Q96L42 1107 aa14.67□□□□□ -0.06
TRIM28-214ENST00000600840 PTPRMP28827 1452 aa14.67□□□□□ -0.06
TRIM28-214ENST00000600840 LMTK3Q96Q04 1460 aa14.64□□□□□ -0.07
TRIM28-214ENST00000600840 CSRNP3Q8WYN3 585 aa14.63□□□□□ -0.07
TRIM28-214ENST00000600840 ABCA8O94911 1581 aa14.63□□□□□ -0.07
TRIM28-214ENST00000600840 PCF11O94913 1555 aaKnown RBP14.63□□□□□ -0.07
TRIM28-214ENST00000600840 P3H3Q8IVL6 736 aa14.62□□□□□ -0.07
TRIM28-214ENST00000600840 MADDQ8WXG6 1647 aa14.61□□□□□ -0.07
TRIM28-214ENST00000600840 GOLGA3Q08378 1498 aa14.61□□□□□ -0.07
TRIM28-214ENST00000600840 BCORL1Q5H9F3 1711 aa14.6□□□□□ -0.07
TRIM28-214ENST00000600840 ARAP3Q8WWN8 1544 aa14.6□□□□□ -0.07
TRIM28-214ENST00000600840 FAM9AQ8IZU1 332 aaPredicted RBP14.57□□□□□ -0.08
TRIM28-214ENST00000600840 RIMS1Q86UR5 1692 aaKnown RBP14.56□□□□□ -0.08
TRIM28-214ENST00000600840 ARID3CA6NKF2 412 aa14.56□□□□□ -0.08
TRIM28-214ENST00000600840 FRMPD1Q5SYB0 1578 aa14.55□□□□□ -0.08
TRIM28-214ENST00000600840 RAPGEF3O95398 923 aa14.54□□□□□ -0.08
TRIM28-214ENST00000600840 HSPA2P54652 639 aa14.54□□□□□ -0.08
TRIM28-214ENST00000600840 ILDR2Q71H61 639 aa14.54□□□□□ -0.08
TRIM28-214ENST00000600840 SAMD9Q5K651 1589 aa14.54□□□□□ -0.08
TRIM28-214ENST00000600840 ATP10BO94823 1461 aa14.52□□□□□ -0.08
TRIM28-214ENST00000600840 EEA1Q15075 1411 aa14.52□□□□□ -0.08
TRIM28-214ENST00000600840 RANGAP1P46060 587 aaPredicted RBP14.52□□□□□ -0.09
TRIM28-214ENST00000600840 ABCA9Q8IUA7 1624 aa14.52□□□□□ -0.09
TRIM28-214ENST00000600840 ARID4BQ4LE39 1312 aaPredicted RBP14.51□□□□□ -0.09
TRIM28-214ENST00000600840 PLPPR3Q6T4P5 718 aa14.5□□□□□ -0.09
TRIM28-214ENST00000600840 CERKQ8TCT0 537 aa14.48□□□□□ -0.09
TRIM28-214ENST00000600840 DISP3Q9P2K9 1392 aa14.47□□□□□ -0.09
TRIM28-214ENST00000600840 RAPGEF6Q8TEU7 1601 aa14.47□□□□□ -0.09
TRIM28-214ENST00000600840 SIGLEC1Q9BZZ2 1709 aa14.46□□□□□ -0.09
TRIM28-214ENST00000600840 EHMT2Q96KQ7 1210 aa14.46□□□□□ -0.09
TRIM28-214ENST00000600840 FHOD3Q2V2M9 1422 aa14.46□□□□□ -0.09
TRIM28-214ENST00000600840 ARHGEF40Q8TER5 1519 aa14.46□□□□□ -0.1
TRIM28-214ENST00000600840 SOCS7O14512 581 aa14.45□□□□□ -0.1
TRIM28-214ENST00000600840 NEO1Q92859 1461 aa14.44□□□□□ -0.1
TRIM28-214ENST00000600840 PHLDB1Q86UU1 1377 aa14.43□□□□□ -0.1
TRIM28-214ENST00000600840 RICTORQ6R327 1708 aa14.43□□□□□ -0.1
TRIM28-214ENST00000600840 NUP153P49790 1475 aaKnown RBP14.43□□□□□ -0.1
TRIM28-214ENST00000600840 FER1L4A9Z1Z3 1794 aa14.39□□□□□ -0.11
TRIM28-214ENST00000600840 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.38□□□□□ -0.11
TRIM28-214ENST00000600840 HNRNPUL2Q1KMD3 747 aaKnown RBP14.38□□□□□ -0.11
TRIM28-214ENST00000600840 SPATA31D1Q6ZQQ2 1576 aa14.38□□□□□ -0.11
TRIM28-214ENST00000600840 DENND4BO75064 1496 aaPredicted RBP14.36□□□□□ -0.11
TRIM28-214ENST00000600840 YEATS2Q9ULM3 1422 aa14.35□□□□□ -0.11
TRIM28-214ENST00000600840 FANCAO15360 1455 aa14.35□□□□□ -0.11
TRIM28-214ENST00000600840 EFCAB5A4FU69 1503 aa14.35□□□□□ -0.11
TRIM28-214ENST00000600840 TTC37Q6PGP7 1564 aa14.34□□□□□ -0.11
TRIM28-214ENST00000600840 MLECQ14165 292 aa14.34□□□□□ -0.11
TRIM28-214ENST00000600840 STRCQ7RTU9 1775 aa14.34□□□□□ -0.11
TRIM28-214ENST00000600840 ZFYVE16Q7Z3T8 1539 aa14.33□□□□□ -0.12
TRIM28-214ENST00000600840 UBTFP17480 764 aaKnown RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms