RNA–Protein interactions for RNA: ENST00000600343.5

NFKB1-212, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2 BASIC

Gene NFKB1, Length 4,010 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-212ENST00000600343 GSE1Q14687 1217 aa13.42□□□□□ -0.26
NFKB1-212ENST00000600343 DHX57Q6P158 1386 aaKnown RBP13.41□□□□□ -0.26
NFKB1-212ENST00000600343 HSP90AA2PQ14568 343 aaPredicted RBP13.4□□□□□ -0.26
NFKB1-212ENST00000600343 ANP32CO43423 234 aa13.39□□□□□ -0.27
NFKB1-212ENST00000600343 PPM1GO15355 546 aaPredicted RBP13.38□□□□□ -0.27
NFKB1-212ENST00000600343 HNRNPUQ00839 825 aaKnown RBP eCLIP13.36□□□□□ -0.27
NFKB1-212ENST00000600343 NACADO15069 1562 aa13.35□□□□□ -0.27
NFKB1-212ENST00000600343 RRP9O43818 475 aaKnown RBP13.35□□□□□ -0.27
NFKB1-212ENST00000600343 PDIA4P13667 645 aaKnown RBP13.35□□□□□ -0.27
NFKB1-212ENST00000600343 RB1CC1Q8TDY2 1594 aa13.34□□□□□ -0.27
NFKB1-212ENST00000600343 EEA1Q15075 1411 aa13.32□□□□□ -0.28
NFKB1-212ENST00000600343 FRAT1Q92837 279 aaPredicted RBP13.31□□□□□ -0.28
NFKB1-212ENST00000600343 NPM2Q86SE8 214 aaKnown RBP13.31□□□□□ -0.28
NFKB1-212ENST00000600343 PPP1R15AO75807 674 aaPredicted RBP13.3□□□□□ -0.28
NFKB1-212ENST00000600343 HSP90AA1P07900 732 aaKnown RBP13.3□□□□□ -0.28
NFKB1-212ENST00000600343 TNIKQ9UKE5 1360 aa13.3□□□□□ -0.28
NFKB1-212ENST00000600343 BCL11BQ9C0K0 894 aaPredicted RBP13.29□□□□□ -0.28
NFKB1-212ENST00000600343 ABCC9O60706 1549 aa13.28□□□□□ -0.28
NFKB1-212ENST00000600343 NAP1L5Q96NT1 182 aaPredicted RBP13.27□□□□□ -0.29
NFKB1-212ENST00000600343 RSF1Q96T23 1441 aaPredicted RBP13.27□□□□□ -0.29
NFKB1-212ENST00000600343 UBTFP17480 764 aaKnown RBP13.23□□□□□ -0.29
NFKB1-212ENST00000600343 DCAF11Q8TEB1 546 aa13.21□□□□□ -0.29
NFKB1-212ENST00000600343 NFKBIBQ15653 356 aa13.21□□□□□ -0.29
NFKB1-212ENST00000600343 RRAGDQ9NQL2 400 aaPredicted RBP13.21□□□□□ -0.3
NFKB1-212ENST00000600343 SIN3AQ96ST3 1273 aa13.17□□□□□ -0.3
NFKB1-212ENST00000600343 PNNQ9H307 717 aaKnown RBP13.17□□□□□ -0.3
NFKB1-212ENST00000600343 HIRIP3Q9BW71 556 aaPredicted RBP13.15□□□□□ -0.3
NFKB1-212ENST00000600343 AEBP2Q6ZN18 517 aaPredicted RBP13.14□□□□□ -0.31
NFKB1-212ENST00000600343 CALD1Q05682 793 aaKnown RBP13.12□□□□□ -0.31
NFKB1-212ENST00000600343 PRDM4Q9UKN5 801 aa13.12□□□□□ -0.31
NFKB1-212ENST00000600343 RGS3P49796 1198 aa13.11□□□□□ -0.31
NFKB1-212ENST00000600343 DDRGK1Q96HY6 314 aa13.11□□□□□ -0.31
NFKB1-212ENST00000600343 TAF7LQ5H9L4 462 aa13.1□□□□□ -0.31
NFKB1-212ENST00000600343 WDR97A6NE52 1622 aa13.09□□□□□ -0.31
NFKB1-212ENST00000600343 PDE4AP27815 886 aa13.08□□□□□ -0.32
NFKB1-212ENST00000600343 NCAPD3P42695 1498 aa13.06□□□□□ -0.32
NFKB1-212ENST00000600343 TCERG1O14776 1098 aaKnown RBP13.05□□□□□ -0.32
NFKB1-212ENST00000600343 CENPJQ9HC77 1338 aaPredicted RBP13.05□□□□□ -0.32
NFKB1-212ENST00000600343 PDCL3Q9H2J4 239 aa13.05□□□□□ -0.32
NFKB1-212ENST00000600343 BAZ1BQ9UIG0 1483 aaKnown RBP13.05□□□□□ -0.32
NFKB1-212ENST00000600343 ABCC8Q09428 1581 aa13.04□□□□□ -0.32
NFKB1-212ENST00000600343 CLCN1P35523 988 aa13.04□□□□□ -0.32
NFKB1-212ENST00000600343 BBXQ8WY36 941 aaPredicted RBP13.04□□□□□ -0.32
NFKB1-212ENST00000600343 ARID4BQ4LE39 1312 aaPredicted RBP13.03□□□□□ -0.32
NFKB1-212ENST00000600343 BACH2Q9BYV9 841 aa13.03□□□□□ -0.32
NFKB1-212ENST00000600343 GOLGA3Q08378 1498 aa13.03□□□□□ -0.32
NFKB1-212ENST00000600343 VPS8Q8N3P4 1428 aa13.03□□□□□ -0.32
NFKB1-212ENST00000600343 FRAT2O75474 233 aaPredicted RBP13.03□□□□□ -0.32
NFKB1-212ENST00000600343 CLIP1P30622 1438 aa13.02□□□□□ -0.33
NFKB1-212ENST00000600343 NAP1L2Q9ULW6 460 aaPredicted RBP13.02□□□□□ -0.33
NFKB1-212ENST00000600343 ZBED9Q6R2W3 1325 aa13.02□□□□□ -0.33
NFKB1-212ENST00000600343 L1TD1Q5T7N2 865 aaKnown RBP13.01□□□□□ -0.33
NFKB1-212ENST00000600343 SOGA1O94964 1423 aa13□□□□□ -0.33
NFKB1-212ENST00000600343 SLC4A3P48751 1232 aa13□□□□□ -0.33
NFKB1-212ENST00000600343 FAM9BQ8IZU0 186 aa12.99□□□□□ -0.33
NFKB1-212ENST00000600343 CCDC88BA6NC98 1476 aa12.99□□□□□ -0.33
NFKB1-212ENST00000600343 MAPKBP1O60336 1514 aa12.98□□□□□ -0.33
NFKB1-212ENST00000600343 AKNAQ7Z591 1439 aa12.98□□□□□ -0.33
NFKB1-212ENST00000600343 KLHL34Q8N239 644 aa12.97□□□□□ -0.33
NFKB1-212ENST00000600343 CHMP4BQ9H444 224 aaKnown RBP12.97□□□□□ -0.33
NFKB1-212ENST00000600343 PEG3Q9GZU2 1588 aa12.97□□□□□ -0.33
NFKB1-212ENST00000600343 MS4A1P11836 297 aa12.96□□□□□ -0.33
NFKB1-212ENST00000600343 CUX2O14529 1486 aa12.96□□□□□ -0.34
NFKB1-212ENST00000600343 TPM2P07951 284 aa12.95□□□□□ -0.34
NFKB1-212ENST00000600343 CANXP27824 592 aaKnown RBP12.95□□□□□ -0.34
NFKB1-212ENST00000600343 PAXIP1Q6ZW49 1069 aaPredicted RBP12.95□□□□□ -0.34
NFKB1-212ENST00000600343 GTF2E1P29083 439 aaPredicted RBP12.95□□□□□ -0.34
NFKB1-212ENST00000600343 RANGAP1P46060 587 aaPredicted RBP12.94□□□□□ -0.34
NFKB1-212ENST00000600343 CEP164Q9UPV0 1460 aa12.94□□□□□ -0.34
NFKB1-212ENST00000600343 POGKQ9P215 609 aa12.93□□□□□ -0.34
NFKB1-212ENST00000600343 CCDC184Q52MB2 194 aa12.92□□□□□ -0.34
NFKB1-212ENST00000600343 ARXQ96QS3 562 aa12.91□□□□□ -0.34
NFKB1-212ENST00000600343 RNF123Q5XPI4 1314 aa12.91□□□□□ -0.34
NFKB1-212ENST00000600343 SMG6Q86US8 1419 aaKnown RBP12.91□□□□□ -0.34
NFKB1-212ENST00000600343 RAB3GAP2Q9H2M9 1393 aa12.9□□□□□ -0.34
NFKB1-212ENST00000600343 SMARCA2P51531 1590 aa12.9□□□□□ -0.34
NFKB1-212ENST00000600343 CNGB1Q14028 1251 aaPredicted RBP12.9□□□□□ -0.34
NFKB1-212ENST00000600343 STAC3Q96MF2 364 aa12.9□□□□□ -0.34
NFKB1-212ENST00000600343 MRS2Q9HD23 443 aa12.89□□□□□ -0.35
NFKB1-212ENST00000600343 NUDCQ9Y266 331 aa12.89□□□□□ -0.35
NFKB1-212ENST00000600343 IPO4Q8TEX9 1081 aaKnown RBP12.89□□□□□ -0.35
NFKB1-212ENST00000600343 ZNF326Q5BKZ1 582 aaKnown RBP12.89□□□□□ -0.35
NFKB1-212ENST00000600343 RUSC2Q8N2Y8 1516 aa12.88□□□□□ -0.35
NFKB1-212ENST00000600343 ZHX1Q9UKY1 873 aaPredicted RBP12.88□□□□□ -0.35
NFKB1-212ENST00000600343 RRBP1Q9P2E9 1410 aaKnown RBP12.86□□□□□ -0.35
NFKB1-212ENST00000600343 NCLP19338 710 aaKnown RBP12.86□□□□□ -0.35
NFKB1-212ENST00000600343 EIF4G1Q04637 1599 aaKnown RBP12.86□□□□□ -0.35
NFKB1-212ENST00000600343 SMAP1Q8IYB5 467 aaPredicted RBP12.85□□□□□ -0.35
NFKB1-212ENST00000600343 XRCC6P12956 609 aaKnown RBP eCLIP12.85□□□□□ -0.35
NFKB1-212ENST00000600343 GOLGA6L3A6NEY3 463 aa12.84□□□□□ -0.35
NFKB1-212ENST00000600343 RSPH4AQ5TD94 716 aa12.84□□□□□ -0.35
NFKB1-212ENST00000600343 ESPNB1AK53 854 aa12.83□□□□□ -0.36
NFKB1-212ENST00000600343 CCNB3Q8WWL7 1395 aa12.82□□□□□ -0.36
NFKB1-212ENST00000600343 MAP7D2Q96T17 732 aa12.82□□□□□ -0.36
NFKB1-212ENST00000600343 PANK2Q9BZ23 570 aa12.82□□□□□ -0.36
NFKB1-212ENST00000600343 EXOC6Q8TAG9 804 aa12.8□□□□□ -0.36
NFKB1-212ENST00000600343 KANK4Q5T7N3 995 aaPredicted RBP12.8□□□□□ -0.36
NFKB1-212ENST00000600343 KIAA1211Q6ZU35 1233 aa12.8□□□□□ -0.36
NFKB1-212ENST00000600343 PRKRIP1Q9H875 184 aaPredicted RBP12.78□□□□□ -0.36
NFKB1-212ENST00000600343 KIF21BO75037 1637 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms