RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 RUSC2Q8N2Y8 1516 aa30.59■■■□□ 2.49
LIG1-216ENST00000598938 KIF13AQ9H1H9 1805 aa30.58■■■□□ 2.49
LIG1-216ENST00000598938 CUL7Q14999 1698 aa30.52■■■□□ 2.48
LIG1-216ENST00000598938 PRG4Q92954 1404 aaPredicted RBP30.48■■■□□ 2.47
LIG1-216ENST00000598938 CARMIL1Q5VZK9 1371 aa30.41■■■□□ 2.46
LIG1-216ENST00000598938 EEA1Q15075 1411 aa30.41■■■□□ 2.46
LIG1-216ENST00000598938 JPH4Q96JJ6 628 aa30.39■■■□□ 2.46
LIG1-216ENST00000598938 MAPKBP1O60336 1514 aa30.37■■■□□ 2.45
LIG1-216ENST00000598938 ABCC10Q5T3U5 1492 aa30.33■■■□□ 2.45
LIG1-216ENST00000598938 CSRNP3Q8WYN3 585 aa30.29■■■□□ 2.44
LIG1-216ENST00000598938 PRXQ9BXM0 1461 aa30.28■■■□□ 2.44
LIG1-216ENST00000598938 RAPGEF2Q9Y4G8 1499 aa30.28■■■□□ 2.44
LIG1-216ENST00000598938 DIP2BQ9P265 1576 aa30.28■■■□□ 2.44
LIG1-216ENST00000598938 ADCY10Q96PN6 1610 aa30.26■■■□□ 2.44
LIG1-216ENST00000598938 NPM1P06748 294 aaKnown RBP eCLIP30.24■■■□□ 2.43
LIG1-216ENST00000598938 FAM9AQ8IZU1 332 aaPredicted RBP30.22■■■□□ 2.43
LIG1-216ENST00000598938 KIAA0586Q9BVV6 1533 aa30.22■■■□□ 2.43
LIG1-216ENST00000598938 FAM69CQ0P6D2 419 aa30.19■■■□□ 2.42
LIG1-216ENST00000598938 KDM6BO15054 1643 aa30.11■■■□□ 2.41
LIG1-216ENST00000598938 KIF21BO75037 1637 aa30.08■■■□□ 2.41
LIG1-216ENST00000598938 TSPOAP1O95153 1857 aa30.02■■■□□ 2.4
LIG1-216ENST00000598938 IQGAP2Q13576 1575 aa30■■■□□ 2.39
LIG1-216ENST00000598938 CTTNBP2Q8WZ74 1663 aa29.98■■■□□ 2.39
LIG1-216ENST00000598938 PTPRGP23470 1445 aa29.95■■■□□ 2.38
LIG1-216ENST00000598938 CARMIL2Q6F5E8 1435 aa29.93■■■□□ 2.38
LIG1-216ENST00000598938 ABCC2Q92887 1545 aa29.92■■■□□ 2.38
LIG1-216ENST00000598938 GOLGA3Q08378 1498 aa29.91■■■□□ 2.38
LIG1-216ENST00000598938 TNIKQ9UKE5 1360 aa29.9■■■□□ 2.38
LIG1-216ENST00000598938 GLI2P10070 1586 aa29.89■■■□□ 2.38
LIG1-216ENST00000598938 UGGT2Q9NYU1 1516 aa29.86■■■□□ 2.37
LIG1-216ENST00000598938 UHRF1BP1LA0JNW5 1464 aa29.86■■■□□ 2.37
LIG1-216ENST00000598938 PLB1Q6P1J6 1458 aa29.86■■■□□ 2.37
LIG1-216ENST00000598938 KDM4FA0A1W2PPD8 638 aa29.84■■■□□ 2.37
LIG1-216ENST00000598938 PPRC1Q5VV67 1664 aaKnown RBP29.83■■■□□ 2.37
LIG1-216ENST00000598938 ASXL2Q76L83 1435 aa29.8■■■□□ 2.36
LIG1-216ENST00000598938 DISP1Q96F81 1524 aa29.77■■■□□ 2.36
LIG1-216ENST00000598938 EHMT2Q96KQ7 1210 aa29.77■■■□□ 2.36
LIG1-216ENST00000598938 UACAQ9BZF9 1416 aa29.74■■■□□ 2.35
LIG1-216ENST00000598938 UBTFP17480 764 aaKnown RBP29.74■■■□□ 2.35
LIG1-216ENST00000598938 KIAA0556O60303 1618 aa29.71■■■□□ 2.35
LIG1-216ENST00000598938 MAP3K4Q9Y6R4 1608 aa29.71■■■□□ 2.35
LIG1-216ENST00000598938 KDM5BQ9UGL1 1544 aa29.71■■■□□ 2.35
LIG1-216ENST00000598938 TTBK1Q5TCY1 1321 aaPredicted RBP29.67■■■□□ 2.34
LIG1-216ENST00000598938 EPRSP07814 1512 aaKnown RBP29.66■■■□□ 2.34
LIG1-216ENST00000598938 SAMD9Q5K651 1589 aa29.64■■■□□ 2.34
LIG1-216ENST00000598938 TEX14Q8IWB6 1497 aa29.64■■■□□ 2.34
LIG1-216ENST00000598938 ZCCHC11Q5TAX3 1644 aaKnown RBP29.63■■■□□ 2.33
LIG1-216ENST00000598938 ADGRL1O94910 1474 aa29.61■■■□□ 2.33
LIG1-216ENST00000598938 EFCAB5A4FU69 1503 aa29.56■■■□□ 2.32
LIG1-216ENST00000598938 COL17A1Q9UMD9 1497 aaPredicted RBP29.54■■■□□ 2.32
LIG1-216ENST00000598938 RANGAP1P46060 587 aaPredicted RBP29.53■■■□□ 2.32
LIG1-216ENST00000598938 WDR7Q9Y4E6 1490 aa29.49■■■□□ 2.31
LIG1-216ENST00000598938 P3H3Q8IVL6 736 aa29.49■■■□□ 2.31
LIG1-216ENST00000598938 LOC105371045A0A1W2PR82 267 aa29.48■■■□□ 2.31
LIG1-216ENST00000598938 ARHGAP35Q9NRY4 1499 aa29.46■■■□□ 2.31
LIG1-216ENST00000598938 FHOD3Q2V2M9 1422 aa29.45■■■□□ 2.3
LIG1-216ENST00000598938 CFAP43Q8NDM7 1665 aa29.44■■■□□ 2.3
LIG1-216ENST00000598938 MAGI3Q5TCQ9 1506 aa29.4■■■□□ 2.3
LIG1-216ENST00000598938 ABCA8O94911 1581 aa29.38■■■□□ 2.29
LIG1-216ENST00000598938 CLIP1P30622 1438 aa29.37■■■□□ 2.29
LIG1-216ENST00000598938 HECW2Q9P2P5 1572 aa29.36■■■□□ 2.29
LIG1-216ENST00000598938 ILDR1Q86SU0 546 aaPredicted RBP29.34■■■□□ 2.29
LIG1-216ENST00000598938 CEP162Q5TB80 1403 aa29.32■■■□□ 2.28
LIG1-216ENST00000598938 CD109Q6YHK3 1445 aa29.31■■■□□ 2.28
LIG1-216ENST00000598938 FMN1Q68DA7 1419 aa29.27■■■□□ 2.28
LIG1-216ENST00000598938 RAPGEF6Q8TEU7 1601 aa29.27■■■□□ 2.28
LIG1-216ENST00000598938 ARAP3Q8WWN8 1544 aa29.18■■■□□ 2.26
LIG1-216ENST00000598938 NUP153P49790 1475 aaKnown RBP29.17■■■□□ 2.26
LIG1-216ENST00000598938 KCNH8Q96L42 1107 aa29.14■■■□□ 2.26
LIG1-216ENST00000598938 ATP10BO94823 1461 aa29.12■■■□□ 2.25
LIG1-216ENST00000598938 ABCA9Q8IUA7 1624 aa29.11■■■□□ 2.25
LIG1-216ENST00000598938 HECW1Q76N89 1606 aa29.1■■■□□ 2.25
LIG1-216ENST00000598938 PHLDB1Q86UU1 1377 aa29.1■■■□□ 2.25
LIG1-216ENST00000598938 CASKIN1Q8WXD9 1431 aa29.09■■■□□ 2.25
LIG1-216ENST00000598938 PCF11O94913 1555 aaKnown RBP29.09■■■□□ 2.25
LIG1-216ENST00000598938 ARID3CA6NKF2 412 aa29.05■■■□□ 2.24
LIG1-216ENST00000598938 FYCO1Q9BQS8 1478 aa29.04■■■□□ 2.24
LIG1-216ENST00000598938 CDK13Q14004 1512 aaKnown RBP28.99■■■□□ 2.23
LIG1-216ENST00000598938 ADAMTSL3P82987 1691 aa28.99■■■□□ 2.23
LIG1-216ENST00000598938 ATP1B4Q9UN42 357 aaPredicted RBP28.99■■■□□ 2.23
LIG1-216ENST00000598938 NEO1Q92859 1461 aa28.98■■■□□ 2.23
LIG1-216ENST00000598938 LRRIQ1Q96JM4 1722 aa28.97■■■□□ 2.23
LIG1-216ENST00000598938 VPS8Q8N3P4 1428 aa28.95■■■□□ 2.23
LIG1-216ENST00000598938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.94■■■□□ 2.22
LIG1-216ENST00000598938 HNRNPUL2Q1KMD3 747 aaKnown RBP28.94■■■□□ 2.22
LIG1-216ENST00000598938 CCDC18Q5T9S5 1454 aa28.93■■■□□ 2.22
LIG1-216ENST00000598938 PTPRMP28827 1452 aa28.91■■■□□ 2.22
LIG1-216ENST00000598938 BCORL1Q5H9F3 1711 aa28.89■■■□□ 2.22
LIG1-216ENST00000598938 FRMPD1Q5SYB0 1578 aa28.88■■■□□ 2.21
LIG1-216ENST00000598938 PLEKHD1A6NEE1 506 aa28.86■■■□□ 2.21
LIG1-216ENST00000598938 CDK11AQ9UQ88 783 aaPredicted RBP28.81■■■□□ 2.2
LIG1-216ENST00000598938 CFAP74Q9C0B2 1584 aa28.8■■■□□ 2.2
LIG1-216ENST00000598938 ARHGEF40Q8TER5 1519 aa28.8■■■□□ 2.2
LIG1-216ENST00000598938 RAPGEF3O95398 923 aa28.8■■■□□ 2.2
LIG1-216ENST00000598938 MADDQ8WXG6 1647 aa28.8■■■□□ 2.2
LIG1-216ENST00000598938 FBXO41Q8TF61 875 aa28.79■■■□□ 2.2
LIG1-216ENST00000598938 RICTORQ6R327 1708 aa28.78■■■□□ 2.2
LIG1-216ENST00000598938 TROQ12816 1431 aaPredicted RBP28.77■■■□□ 2.2
LIG1-216ENST00000598938 DENND4BO75064 1496 aaPredicted RBP28.72■■■□□ 2.19
LIG1-216ENST00000598938 LMTK3Q96Q04 1460 aa28.71■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms