RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MAPKBP1O60336 1514 aa25.32■■□□□ 1.64
SHKBP1-218ENST00000598907 TSPOAP1O95153 1857 aa25.32■■□□□ 1.64
SHKBP1-218ENST00000598907 NPM1P06748 294 aaKnown RBP eCLIP25.3■■□□□ 1.64
SHKBP1-218ENST00000598907 WRNQ14191 1432 aaPredicted RBP eCLIP25.28■■□□□ 1.64
SHKBP1-218ENST00000598907 ADCY10Q96PN6 1610 aa25.26■■□□□ 1.63
SHKBP1-218ENST00000598907 JPH4Q96JJ6 628 aa25.22■■□□□ 1.63
SHKBP1-218ENST00000598907 RUSC2Q8N2Y8 1516 aa25.22■■□□□ 1.63
SHKBP1-218ENST00000598907 ERICH3Q5RHP9 1530 aa25.21■■□□□ 1.63
SHKBP1-218ENST00000598907 ADGRL1O94910 1474 aa25.15■■□□□ 1.62
SHKBP1-218ENST00000598907 BIVM-ERCC5R4GMW8 1640 aa25.13■■□□□ 1.61
SHKBP1-218ENST00000598907 HECW2Q9P2P5 1572 aa25.12■■□□□ 1.61
SHKBP1-218ENST00000598907 TOP2BQ02880 1626 aa25.11■■□□□ 1.61
SHKBP1-218ENST00000598907 PPRC1Q5VV67 1664 aaKnown RBP24.99■■□□□ 1.59
SHKBP1-218ENST00000598907 TTBK1Q5TCY1 1321 aaPredicted RBP24.96■■□□□ 1.59
SHKBP1-218ENST00000598907 KIAA0586Q9BVV6 1533 aa24.88■■□□□ 1.57
SHKBP1-218ENST00000598907 ASXL2Q76L83 1435 aa24.87■■□□□ 1.57
SHKBP1-218ENST00000598907 GLI2P10070 1586 aa24.85■■□□□ 1.57
SHKBP1-218ENST00000598907 COL17A1Q9UMD9 1497 aaPredicted RBP24.85■■□□□ 1.57
SHKBP1-218ENST00000598907 ABCC2Q92887 1545 aa24.85■■□□□ 1.57
SHKBP1-218ENST00000598907 PTPRGP23470 1445 aa24.85■■□□□ 1.57
SHKBP1-218ENST00000598907 CUL7Q14999 1698 aa24.84■■□□□ 1.57
SHKBP1-218ENST00000598907 PLB1Q6P1J6 1458 aa24.82■■□□□ 1.56
SHKBP1-218ENST00000598907 MAP3K4Q9Y6R4 1608 aa24.75■■□□□ 1.55
SHKBP1-218ENST00000598907 FBXO41Q8TF61 875 aa24.75■■□□□ 1.55
SHKBP1-218ENST00000598907 SUPT5HO00267 1087 aaKnown RBP24.73■■□□□ 1.55
SHKBP1-218ENST00000598907 TNIKQ9UKE5 1360 aa24.72■■□□□ 1.55
SHKBP1-218ENST00000598907 TEX14Q8IWB6 1497 aa24.71■■□□□ 1.55
SHKBP1-218ENST00000598907 EPRSP07814 1512 aaKnown RBP24.71■■□□□ 1.55
SHKBP1-218ENST00000598907 CARMIL2Q6F5E8 1435 aa24.69■■□□□ 1.54
SHKBP1-218ENST00000598907 UHRF1BP1LA0JNW5 1464 aa24.65■■□□□ 1.54
SHKBP1-218ENST00000598907 IGF1RP08069 1367 aa24.64■■□□□ 1.53
SHKBP1-218ENST00000598907 UACAQ9BZF9 1416 aa24.63■■□□□ 1.53
SHKBP1-218ENST00000598907 ZCCHC11Q5TAX3 1644 aaKnown RBP24.61■■□□□ 1.53
SHKBP1-218ENST00000598907 IQGAP2Q13576 1575 aa24.59■■□□□ 1.53
SHKBP1-218ENST00000598907 KIF21BO75037 1637 aa24.58■■□□□ 1.53
SHKBP1-218ENST00000598907 KIF27Q86VH2 1401 aa24.58■■□□□ 1.53
SHKBP1-218ENST00000598907 KDM5BQ9UGL1 1544 aa24.57■■□□□ 1.52
SHKBP1-218ENST00000598907 DISP1Q96F81 1524 aa24.51■■□□□ 1.51
SHKBP1-218ENST00000598907 WDR7Q9Y4E6 1490 aa24.49■■□□□ 1.51
SHKBP1-218ENST00000598907 CARMIL1Q5VZK9 1371 aa24.48■■□□□ 1.51
SHKBP1-218ENST00000598907 LMTK3Q96Q04 1460 aa24.45■■□□□ 1.51
SHKBP1-218ENST00000598907 CFAP43Q8NDM7 1665 aa24.42■■□□□ 1.5
SHKBP1-218ENST00000598907 CD109Q6YHK3 1445 aa24.41■■□□□ 1.5
SHKBP1-218ENST00000598907 KIAA0556O60303 1618 aa24.4■■□□□ 1.5
SHKBP1-218ENST00000598907 MAGI3Q5TCQ9 1506 aa24.4■■□□□ 1.5
SHKBP1-218ENST00000598907 PTPRMP28827 1452 aa24.38■■□□□ 1.49
SHKBP1-218ENST00000598907 UGGT2Q9NYU1 1516 aa24.35■■□□□ 1.49
SHKBP1-218ENST00000598907 KCNH8Q96L42 1107 aa24.34■■□□□ 1.49
SHKBP1-218ENST00000598907 ADAMTSL3P82987 1691 aa24.33■■□□□ 1.49
SHKBP1-218ENST00000598907 PCF11O94913 1555 aaKnown RBP24.33■■□□□ 1.48
SHKBP1-218ENST00000598907 MADDQ8WXG6 1647 aa24.26■■□□□ 1.47
SHKBP1-218ENST00000598907 ARAP3Q8WWN8 1544 aa24.22■■□□□ 1.47
SHKBP1-218ENST00000598907 BCORL1Q5H9F3 1711 aa24.21■■□□□ 1.47
SHKBP1-218ENST00000598907 ABCA8O94911 1581 aa24.19■■□□□ 1.46
SHKBP1-218ENST00000598907 RAPGEF2Q9Y4G8 1499 aa24.18■■□□□ 1.46
SHKBP1-218ENST00000598907 DISP3Q9P2K9 1392 aa24.17■■□□□ 1.46
SHKBP1-218ENST00000598907 ILDR2Q71H61 639 aa24.17■■□□□ 1.46
SHKBP1-218ENST00000598907 ARID4BQ4LE39 1312 aaPredicted RBP24.16■■□□□ 1.46
SHKBP1-218ENST00000598907 RIMS1Q86UR5 1692 aaKnown RBP24.16■■□□□ 1.46
SHKBP1-218ENST00000598907 HSPA2P54652 639 aa24.15■■□□□ 1.46
SHKBP1-218ENST00000598907 ARID3CA6NKF2 412 aa24.13■■□□□ 1.45
SHKBP1-218ENST00000598907 CTTNBP2Q8WZ74 1663 aa24.12■■□□□ 1.45
SHKBP1-218ENST00000598907 SOCS7O14512 581 aa24.12■■□□□ 1.45
SHKBP1-218ENST00000598907 PLPPR3Q6T4P5 718 aa24.12■■□□□ 1.45
SHKBP1-218ENST00000598907 RAPGEF3O95398 923 aa24.11■■□□□ 1.45
SHKBP1-218ENST00000598907 CERKQ8TCT0 537 aa24.09■■□□□ 1.45
SHKBP1-218ENST00000598907 FRMPD1Q5SYB0 1578 aa24.08■■□□□ 1.45
SHKBP1-218ENST00000598907 GOLGA3Q08378 1498 aa24.07■■□□□ 1.44
SHKBP1-218ENST00000598907 ABCA9Q8IUA7 1624 aa24.06■■□□□ 1.44
SHKBP1-218ENST00000598907 ARHGEF40Q8TER5 1519 aa24.01■■□□□ 1.43
SHKBP1-218ENST00000598907 PHLDB1Q86UU1 1377 aa24■■□□□ 1.43
SHKBP1-218ENST00000598907 NEO1Q92859 1461 aa23.99■■□□□ 1.43
SHKBP1-218ENST00000598907 SPATA31D1Q6ZQQ2 1576 aa23.99■■□□□ 1.43
SHKBP1-218ENST00000598907 ATP10BO94823 1461 aa23.95■■□□□ 1.42
SHKBP1-218ENST00000598907 FANCAO15360 1455 aa23.88■■□□□ 1.41
SHKBP1-218ENST00000598907 RICTORQ6R327 1708 aa23.88■■□□□ 1.41
SHKBP1-218ENST00000598907 SIGLEC1Q9BZZ2 1709 aa23.88■■□□□ 1.41
SHKBP1-218ENST00000598907 P3H3Q8IVL6 736 aa23.87■■□□□ 1.41
SHKBP1-218ENST00000598907 FER1L4A9Z1Z3 1794 aa23.86■■□□□ 1.41
SHKBP1-218ENST00000598907 POGZQ7Z3K3 1410 aa23.85■■□□□ 1.41
SHKBP1-218ENST00000598907 DENND4BO75064 1496 aaPredicted RBP23.85■■□□□ 1.41
SHKBP1-218ENST00000598907 MLECQ14165 292 aa23.84■■□□□ 1.41
SHKBP1-218ENST00000598907 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.83■■□□□ 1.41
SHKBP1-218ENST00000598907 HNRNPUL2Q1KMD3 747 aaKnown RBP23.83■■□□□ 1.41
SHKBP1-218ENST00000598907 AKNAQ7Z591 1439 aa23.82■■□□□ 1.4
SHKBP1-218ENST00000598907 FAM9AQ8IZU1 332 aaPredicted RBP23.81■■□□□ 1.4
SHKBP1-218ENST00000598907 TTC37Q6PGP7 1564 aa23.81■■□□□ 1.4
SHKBP1-218ENST00000598907 ZFYVE16Q7Z3T8 1539 aa23.8■■□□□ 1.4
SHKBP1-218ENST00000598907 RAPGEF6Q8TEU7 1601 aa23.8■■□□□ 1.4
SHKBP1-218ENST00000598907 YEATS2Q9ULM3 1422 aa23.79■■□□□ 1.4
SHKBP1-218ENST00000598907 PREX1Q8TCU6 1659 aa23.79■■□□□ 1.4
SHKBP1-218ENST00000598907 EFCAB5A4FU69 1503 aa23.77■■□□□ 1.4
SHKBP1-218ENST00000598907 ZMYM4Q5VZL5 1548 aa23.76■■□□□ 1.39
SHKBP1-218ENST00000598907 FHOD3Q2V2M9 1422 aa23.76■■□□□ 1.39
SHKBP1-218ENST00000598907 CFAP74Q9C0B2 1584 aa23.75■■□□□ 1.39
SHKBP1-218ENST00000598907 STRCQ7RTU9 1775 aa23.72■■□□□ 1.39
SHKBP1-218ENST00000598907 HECW1Q76N89 1606 aa23.69■■□□□ 1.38
SHKBP1-218ENST00000598907 NUP153P49790 1475 aaKnown RBP23.68■■□□□ 1.38
SHKBP1-218ENST00000598907 PRXQ9BXM0 1461 aa23.68■■□□□ 1.38
SHKBP1-218ENST00000598907 SAMD9Q5K651 1589 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms