RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 IGF1RP08069 1367 aa17.69■□□□□ 0.42
LIG1-209ENST00000596104 ABCC10Q5T3U5 1492 aa17.67■□□□□ 0.42
LIG1-209ENST00000596104 KIF13AQ9H1H9 1805 aa17.67■□□□□ 0.42
LIG1-209ENST00000596104 KIAA0586Q9BVV6 1533 aa17.67■□□□□ 0.42
LIG1-209ENST00000596104 FAM69CQ0P6D2 419 aa17.65■□□□□ 0.42
LIG1-209ENST00000596104 KIF27Q86VH2 1401 aa17.64■□□□□ 0.42
LIG1-209ENST00000596104 MAPKBP1O60336 1514 aa17.64■□□□□ 0.41
LIG1-209ENST00000596104 NPM1P06748 294 aaKnown RBP eCLIP17.63■□□□□ 0.41
LIG1-209ENST00000596104 ADCY10Q96PN6 1610 aa17.61■□□□□ 0.41
LIG1-209ENST00000596104 DIP2BQ9P265 1576 aa17.59■□□□□ 0.41
LIG1-209ENST00000596104 CUL7Q14999 1698 aa17.58■□□□□ 0.4
LIG1-209ENST00000596104 CARMIL1Q5VZK9 1371 aa17.54■□□□□ 0.4
LIG1-209ENST00000596104 PTPRGP23470 1445 aa17.53■□□□□ 0.4
LIG1-209ENST00000596104 TNIKQ9UKE5 1360 aa17.49■□□□□ 0.39
LIG1-209ENST00000596104 CARMIL2Q6F5E8 1435 aa17.47■□□□□ 0.39
LIG1-209ENST00000596104 ABCC2Q92887 1545 aa17.46■□□□□ 0.39
LIG1-209ENST00000596104 KDM6BO15054 1643 aa17.45■□□□□ 0.38
LIG1-209ENST00000596104 TTBK1Q5TCY1 1321 aaPredicted RBP17.45■□□□□ 0.38
LIG1-209ENST00000596104 KDM4FA0A1W2PPD8 638 aa17.43■□□□□ 0.38
LIG1-209ENST00000596104 IQGAP2Q13576 1575 aa17.43■□□□□ 0.38
LIG1-209ENST00000596104 UHRF1BP1LA0JNW5 1464 aa17.42■□□□□ 0.38
LIG1-209ENST00000596104 ASXL2Q76L83 1435 aa17.41■□□□□ 0.38
LIG1-209ENST00000596104 DISP1Q96F81 1524 aa17.41■□□□□ 0.38
LIG1-209ENST00000596104 PLB1Q6P1J6 1458 aa17.4■□□□□ 0.38
LIG1-209ENST00000596104 UACAQ9BZF9 1416 aa17.39■□□□□ 0.38
LIG1-209ENST00000596104 GLI2P10070 1586 aa17.37■□□□□ 0.37
LIG1-209ENST00000596104 TSPOAP1O95153 1857 aa17.36■□□□□ 0.37
LIG1-209ENST00000596104 RAPGEF2Q9Y4G8 1499 aa17.35■□□□□ 0.37
LIG1-209ENST00000596104 UGGT2Q9NYU1 1516 aa17.35■□□□□ 0.37
LIG1-209ENST00000596104 KDM5BQ9UGL1 1544 aa17.34■□□□□ 0.37
LIG1-209ENST00000596104 PPRC1Q5VV67 1664 aaKnown RBP17.32■□□□□ 0.36
LIG1-209ENST00000596104 EPRSP07814 1512 aaKnown RBP17.31■□□□□ 0.36
LIG1-209ENST00000596104 COL17A1Q9UMD9 1497 aaPredicted RBP17.3■□□□□ 0.36
LIG1-209ENST00000596104 KIAA0556O60303 1618 aa17.28■□□□□ 0.36
LIG1-209ENST00000596104 ZCCHC11Q5TAX3 1644 aaKnown RBP17.24■□□□□ 0.35
LIG1-209ENST00000596104 MAP3K4Q9Y6R4 1608 aa17.24■□□□□ 0.35
LIG1-209ENST00000596104 ADGRL1O94910 1474 aa17.22■□□□□ 0.35
LIG1-209ENST00000596104 TEX14Q8IWB6 1497 aa17.22■□□□□ 0.35
LIG1-209ENST00000596104 WDR7Q9Y4E6 1490 aa17.21■□□□□ 0.35
LIG1-209ENST00000596104 GOLGA3Q08378 1498 aa17.17■□□□□ 0.34
LIG1-209ENST00000596104 PRXQ9BXM0 1461 aa17.17■□□□□ 0.34
LIG1-209ENST00000596104 ABCA8O94911 1581 aa17.15■□□□□ 0.34
LIG1-209ENST00000596104 MAGI3Q5TCQ9 1506 aa17.13■□□□□ 0.33
LIG1-209ENST00000596104 CD109Q6YHK3 1445 aa17.13■□□□□ 0.33
LIG1-209ENST00000596104 CTTNBP2Q8WZ74 1663 aa17.11■□□□□ 0.33
LIG1-209ENST00000596104 KCNH8Q96L42 1107 aa17.1■□□□□ 0.33
LIG1-209ENST00000596104 CFAP43Q8NDM7 1665 aa17.06■□□□□ 0.32
LIG1-209ENST00000596104 ILDR1Q86SU0 546 aaPredicted RBP17.05■□□□□ 0.32
LIG1-209ENST00000596104 ATP10BO94823 1461 aa17.03■□□□□ 0.32
LIG1-209ENST00000596104 HECW2Q9P2P5 1572 aa17.02■□□□□ 0.31
LIG1-209ENST00000596104 ARID3CA6NKF2 412 aa17.01■□□□□ 0.31
LIG1-209ENST00000596104 P3H3Q8IVL6 736 aa17.01■□□□□ 0.31
LIG1-209ENST00000596104 ARAP3Q8WWN8 1544 aa17■□□□□ 0.31
LIG1-209ENST00000596104 CSRNP3Q8WYN3 585 aa16.97■□□□□ 0.31
LIG1-209ENST00000596104 FAM9AQ8IZU1 332 aaPredicted RBP16.96■□□□□ 0.31
LIG1-209ENST00000596104 SAMD9Q5K651 1589 aa16.95■□□□□ 0.3
LIG1-209ENST00000596104 PHLDB1Q86UU1 1377 aa16.95■□□□□ 0.3
LIG1-209ENST00000596104 ABCA9Q8IUA7 1624 aa16.93■□□□□ 0.3
LIG1-209ENST00000596104 KIF21BO75037 1637 aa16.92■□□□□ 0.3
LIG1-209ENST00000596104 RAPGEF3O95398 923 aa16.9■□□□□ 0.3
LIG1-209ENST00000596104 NEO1Q92859 1461 aa16.9■□□□□ 0.3
LIG1-209ENST00000596104 RAPGEF6Q8TEU7 1601 aa16.89■□□□□ 0.29
LIG1-209ENST00000596104 NUP153P49790 1475 aaKnown RBP16.89■□□□□ 0.29
LIG1-209ENST00000596104 EEA1Q15075 1411 aa16.86■□□□□ 0.29
LIG1-209ENST00000596104 FHOD3Q2V2M9 1422 aa16.86■□□□□ 0.29
LIG1-209ENST00000596104 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.85■□□□□ 0.29
LIG1-209ENST00000596104 HNRNPUL2Q1KMD3 747 aaKnown RBP16.85■□□□□ 0.29
LIG1-209ENST00000596104 PTPRMP28827 1452 aa16.84■□□□□ 0.29
LIG1-209ENST00000596104 FRMPD1Q5SYB0 1578 aa16.84■□□□□ 0.29
LIG1-209ENST00000596104 ADAMTSL3P82987 1691 aa16.83■□□□□ 0.28
LIG1-209ENST00000596104 RANGAP1P46060 587 aaPredicted RBP16.81■□□□□ 0.28
LIG1-209ENST00000596104 PLEKHD1A6NEE1 506 aa16.8■□□□□ 0.28
LIG1-209ENST00000596104 DENND4BO75064 1496 aaPredicted RBP16.78■□□□□ 0.28
LIG1-209ENST00000596104 AKNAQ7Z591 1439 aa16.77■□□□□ 0.27
LIG1-209ENST00000596104 ARHGEF40Q8TER5 1519 aa16.75■□□□□ 0.27
LIG1-209ENST00000596104 ARID4BQ4LE39 1312 aaPredicted RBP16.75■□□□□ 0.27
LIG1-209ENST00000596104 FANCAO15360 1455 aa16.75■□□□□ 0.27
LIG1-209ENST00000596104 BCORL1Q5H9F3 1711 aa16.75■□□□□ 0.27
LIG1-209ENST00000596104 EFCAB5A4FU69 1503 aa16.75■□□□□ 0.27
LIG1-209ENST00000596104 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.75■□□□□ 0.27
LIG1-209ENST00000596104 MADDQ8WXG6 1647 aa16.74■□□□□ 0.27
LIG1-209ENST00000596104 LMTK3Q96Q04 1460 aa16.71■□□□□ 0.27
LIG1-209ENST00000596104 RICTORQ6R327 1708 aa16.7■□□□□ 0.26
LIG1-209ENST00000596104 PCF11O94913 1555 aaKnown RBP16.7■□□□□ 0.26
LIG1-209ENST00000596104 TTC37Q6PGP7 1564 aa16.7■□□□□ 0.26
LIG1-209ENST00000596104 FBXO41Q8TF61 875 aa16.7■□□□□ 0.26
LIG1-209ENST00000596104 CDK13Q14004 1512 aaKnown RBP16.7■□□□□ 0.26
LIG1-209ENST00000596104 ZMYM4Q5VZL5 1548 aa16.7■□□□□ 0.26
LIG1-209ENST00000596104 YEATS2Q9ULM3 1422 aa16.69■□□□□ 0.26
LIG1-209ENST00000596104 CFAP74Q9C0B2 1584 aa16.68■□□□□ 0.26
LIG1-209ENST00000596104 MAGI2Q86UL8 1455 aa16.67■□□□□ 0.26
LIG1-209ENST00000596104 PLCH2O75038 1416 aa16.66■□□□□ 0.26
LIG1-209ENST00000596104 ZFYVE16Q7Z3T8 1539 aa16.65■□□□□ 0.26
LIG1-209ENST00000596104 POGZQ7Z3K3 1410 aa16.65■□□□□ 0.26
LIG1-209ENST00000596104 SCAPERQ9BY12 1400 aa16.64■□□□□ 0.25
LIG1-209ENST00000596104 RIMS1Q86UR5 1692 aaKnown RBP16.63■□□□□ 0.25
LIG1-209ENST00000596104 SIGLEC1Q9BZZ2 1709 aa16.62■□□□□ 0.25
LIG1-209ENST00000596104 HECW1Q76N89 1606 aa16.62■□□□□ 0.25
LIG1-209ENST00000596104 FMN1Q68DA7 1419 aa16.61■□□□□ 0.25
LIG1-209ENST00000596104 ARHGAP35Q9NRY4 1499 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms