RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 P3H3Q8IVL6 736 aa25.68■■□□□ 1.7
SHKBP1-205ENST00000594973 MRC2Q9UBG0 1479 aa25.66■■□□□ 1.7
SHKBP1-205ENST00000594973 TARBP1Q13395 1621 aaKnown RBP25.63■■□□□ 1.69
SHKBP1-205ENST00000594973 NEUROD1Q13562 356 aa25.59■■□□□ 1.69
SHKBP1-205ENST00000594973 AQRO60306 1485 aaKnown RBP eCLIP25.55■■□□□ 1.681e-9■■■■□ 22.4
SHKBP1-205ENST00000594973 FHOD3Q2V2M9 1422 aa25.54■■□□□ 1.68
SHKBP1-205ENST00000594973 ATP1B4Q9UN42 357 aaPredicted RBP25.52■■□□□ 1.68
SHKBP1-205ENST00000594973 CTTNBP2Q8WZ74 1663 aa25.52■■□□□ 1.68
SHKBP1-205ENST00000594973 CENPBP07199 599 aaPredicted RBP25.52■■□□□ 1.68
SHKBP1-205ENST00000594973 FHAD1B1AJZ9 1412 aa25.5■■□□□ 1.67
SHKBP1-205ENST00000594973 ERCC6Q03468 1493 aa25.49■■□□□ 1.67
SHKBP1-205ENST00000594973 GTF3C3Q9Y5Q9 886 aa25.48■■□□□ 1.67
SHKBP1-205ENST00000594973 EFCAB5A4FU69 1503 aa25.46■■□□□ 1.67
SHKBP1-205ENST00000594973 WDR62O43379 1518 aa25.46■■□□□ 1.67
SHKBP1-205ENST00000594973 TIAM1Q13009 1591 aa25.45■■□□□ 1.66
SHKBP1-205ENST00000594973 PCF11O94913 1555 aaKnown RBP25.43■■□□□ 1.66
SHKBP1-205ENST00000594973 PBRM1Q86U86 1689 aa25.43■■□□□ 1.66
SHKBP1-205ENST00000594973 ZNF608Q9ULD9 1512 aaPredicted RBP25.42■■□□□ 1.66
SHKBP1-205ENST00000594973 IFT140Q96RY7 1462 aa25.42■■□□□ 1.66
SHKBP1-205ENST00000594973 MAP3K1Q13233 1512 aa25.39■■□□□ 1.65
SHKBP1-205ENST00000594973 GRIN2BQ13224 1484 aa25.38■■□□□ 1.65
SHKBP1-205ENST00000594973 RRBP1Q9P2E9 1410 aaKnown RBP25.38■■□□□ 1.65
SHKBP1-205ENST00000594973 LRRC9Q6ZRR7 1453 aa25.37■■□□□ 1.65
SHKBP1-205ENST00000594973 CCNB3Q8WWL7 1395 aa25.34■■□□□ 1.65
SHKBP1-205ENST00000594973 ADAMTS12P58397 1594 aa25.34■■□□□ 1.65
SHKBP1-205ENST00000594973 CASKIN1Q8WXD9 1431 aa25.33■■□□□ 1.65
SHKBP1-205ENST00000594973 FYCO1Q9BQS8 1478 aa25.33■■□□□ 1.65
SHKBP1-205ENST00000594973 FMN1Q68DA7 1419 aa25.33■■□□□ 1.65
SHKBP1-205ENST00000594973 ITGAEP38570 1179 aa25.3■■□□□ 1.64
SHKBP1-205ENST00000594973 SAMD9Q5K651 1589 aa25.3■■□□□ 1.64
SHKBP1-205ENST00000594973 CFAP43Q8NDM7 1665 aa25.28■■□□□ 1.64
SHKBP1-205ENST00000594973 THOC2Q8NI27 1593 aaKnown RBP25.27■■□□□ 1.64
SHKBP1-205ENST00000594973 PHLDB1Q86UU1 1377 aa25.25■■□□□ 1.63
SHKBP1-205ENST00000594973 SNAPC4Q5SXM2 1469 aa25.24■■□□□ 1.63
SHKBP1-205ENST00000594973 EIF4G3O43432 1585 aaKnown RBP25.22■■□□□ 1.63
SHKBP1-205ENST00000594973 IQGAP2Q13576 1575 aa25.21■■□□□ 1.63
SHKBP1-205ENST00000594973 DIEXFQ68CQ4 756 aaKnown RBP25.2■■□□□ 1.62
SHKBP1-205ENST00000594973 FAM50AQ14320 339 aaKnown RBP25.17■■□□□ 1.62
SHKBP1-205ENST00000594973 MTUS2Q5JR59 1369 aa25.12■■□□□ 1.61
SHKBP1-205ENST00000594973 GRIN2AQ12879 1464 aa25.1■■□□□ 1.61
SHKBP1-205ENST00000594973 FBLN2P98095 1184 aa25.1■■□□□ 1.61
SHKBP1-205ENST00000594973 CHMP7Q8WUX9 453 aaPredicted RBP25.09■■□□□ 1.61
SHKBP1-205ENST00000594973 DHX57Q6P158 1386 aaKnown RBP25.08■■□□□ 1.61
SHKBP1-205ENST00000594973 LRRIQ1Q96JM4 1722 aa25.07■■□□□ 1.6
SHKBP1-205ENST00000594973 KIAA0586Q9BVV6 1533 aa25.06■■□□□ 1.6
SHKBP1-205ENST00000594973 MAGI1Q96QZ7 1491 aaPredicted RBP25.05■■□□□ 1.6
SHKBP1-205ENST00000594973 UGGT2Q9NYU1 1516 aa25.04■■□□□ 1.6
SHKBP1-205ENST00000594973 ARID3CA6NKF2 412 aa25.02■■□□□ 1.6
SHKBP1-205ENST00000594973 SYNJ2O15056 1496 aa25.01■■□□□ 1.59
SHKBP1-205ENST00000594973 RAB3GAP2Q9H2M9 1393 aa24.99■■□□□ 1.59
SHKBP1-205ENST00000594973 FGD6Q6ZV73 1430 aa24.96■■□□□ 1.59
SHKBP1-205ENST00000594973 DISP1Q96F81 1524 aa24.96■■□□□ 1.59
SHKBP1-205ENST00000594973 HECW1Q76N89 1606 aa24.96■■□□□ 1.59
SHKBP1-205ENST00000594973 NCOA2Q15596 1464 aa24.96■■□□□ 1.59
SHKBP1-205ENST00000594973 CCDC18Q5T9S5 1454 aa24.96■■□□□ 1.59
SHKBP1-205ENST00000594973 CLSPNQ9HAW4 1339 aa24.95■■□□□ 1.59
SHKBP1-205ENST00000594973 SETD5Q9C0A6 1442 aa24.94■■□□□ 1.58
SHKBP1-205ENST00000594973 KIAA0556O60303 1618 aa24.93■■□□□ 1.58
SHKBP1-205ENST00000594973 EPRSP07814 1512 aaKnown RBP24.93■■□□□ 1.58
SHKBP1-205ENST00000594973 MAGI3Q5TCQ9 1506 aa24.93■■□□□ 1.58
SHKBP1-205ENST00000594973 CEP170Q5SW79 1584 aa24.93■■□□□ 1.58
SHKBP1-205ENST00000594973 EHBP1L1Q8N3D4 1523 aa24.93■■□□□ 1.58
SHKBP1-205ENST00000594973 CDK13Q14004 1512 aaKnown RBP24.91■■□□□ 1.58
SHKBP1-205ENST00000594973 SUPT6HQ7KZ85 1726 aaKnown RBP24.9■■□□□ 1.58
SHKBP1-205ENST00000594973 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.89■■□□□ 1.58
SHKBP1-205ENST00000594973 MYOM3Q5VTT5 1437 aa24.88■■□□□ 1.57
SHKBP1-205ENST00000594973 ZNF316A6NFI3 1004 aaPredicted RBP24.87■■□□□ 1.57
SHKBP1-205ENST00000594973 NUP160Q12769 1436 aa24.84■■□□□ 1.57
SHKBP1-205ENST00000594973 JPH4Q96JJ6 628 aa24.83■■□□□ 1.57
SHKBP1-205ENST00000594973 ARHGEF11O15085 1522 aa24.8■■□□□ 1.56
SHKBP1-205ENST00000594973 NUP153P49790 1475 aaKnown RBP24.79■■□□□ 1.56
SHKBP1-205ENST00000594973 PTPRKQ15262 1439 aa24.78■■□□□ 1.56
SHKBP1-205ENST00000594973 RAPGEF6Q8TEU7 1601 aa24.76■■□□□ 1.55
SHKBP1-205ENST00000594973 CARMIL2Q6F5E8 1435 aa24.76■■□□□ 1.55
SHKBP1-205ENST00000594973 PTPN23Q9H3S7 1636 aa24.74■■□□□ 1.55
SHKBP1-205ENST00000594973 MAPKBP1O60336 1514 aa24.74■■□□□ 1.55
SHKBP1-205ENST00000594973 PLB1Q6P1J6 1458 aa24.73■■□□□ 1.55
SHKBP1-205ENST00000594973 CDK11AQ9UQ88 783 aaPredicted RBP24.69■■□□□ 1.54
SHKBP1-205ENST00000594973 CHIC2Q9UKJ5 165 aa24.67■■□□□ 1.54
SHKBP1-205ENST00000594973 HFM1A2PYH4 1435 aa24.66■■□□□ 1.54
SHKBP1-205ENST00000594973 TCOF1Q13428 1488 aaKnown RBP24.64■■□□□ 1.54
SHKBP1-205ENST00000594973 SIN3AQ96ST3 1273 aa24.63■■□□□ 1.53
SHKBP1-205ENST00000594973 MIA2Q96PC5 1412 aa24.63■■□□□ 1.53
SHKBP1-205ENST00000594973 PRG4Q92954 1404 aaPredicted RBP24.62■■□□□ 1.53
SHKBP1-205ENST00000594973 RRP7BPQ9NSQ0 103 aa24.62■■□□□ 1.53
SHKBP1-205ENST00000594973 NAIPQ13075 1403 aa24.62■■□□□ 1.53
SHKBP1-205ENST00000594973 TROQ12816 1431 aaPredicted RBP24.57■■□□□ 1.52
SHKBP1-205ENST00000594973 CHD1O14646 1710 aa24.57■■□□□ 1.52
SHKBP1-205ENST00000594973 ZNF644Q9H582 1327 aaPredicted RBP24.56■■□□□ 1.52
SHKBP1-205ENST00000594973 YTHDC1Q96MU7 727 aaKnown RBP24.56■■□□□ 1.52
SHKBP1-205ENST00000594973 UACAQ9BZF9 1416 aa24.52■■□□□ 1.52
SHKBP1-205ENST00000594973 ABCA8O94911 1581 aa24.51■■□□□ 1.51
SHKBP1-205ENST00000594973 PTPRGP23470 1445 aa24.5■■□□□ 1.51
SHKBP1-205ENST00000594973 PLEKHD1A6NEE1 506 aa24.48■■□□□ 1.51
SHKBP1-205ENST00000594973 CFDP1Q9UEE9 299 aaPredicted RBP24.48■■□□□ 1.51
SHKBP1-205ENST00000594973 ANP32EQ9BTT0 268 aa24.47■■□□□ 1.51
SHKBP1-205ENST00000594973 KIF14Q15058 1648 aa24.47■■□□□ 1.51
SHKBP1-205ENST00000594973 MIER1Q8N108 512 aa24.47■■□□□ 1.51
SHKBP1-205ENST00000594973 ATP10BO94823 1461 aa24.46■■□□□ 1.51
SHKBP1-205ENST00000594973 BCL11AQ9H165 835 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms