RNA–Protein interactions for RNA: ENST00000591595.5

SMARCA4-217, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 3,377 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-217ENST00000591595 KANK4Q5T7N3 995 aaPredicted RBP17.2■□□□□ 0.34
SMARCA4-217ENST00000591595 DHX57Q6P158 1386 aaKnown RBP17.13■□□□□ 0.33
SMARCA4-217ENST00000591595 NBR1Q14596 966 aa17.1■□□□□ 0.33
SMARCA4-217ENST00000591595 TOP2BQ02880 1626 aa17.07■□□□□ 0.32
SMARCA4-217ENST00000591595 ARAP1Q96P48 1450 aa17.05■□□□□ 0.32
SMARCA4-217ENST00000591595 KIF27Q86VH2 1401 aa17.05■□□□□ 0.32
SMARCA4-217ENST00000591595 PRXQ9BXM0 1461 aa17.04■□□□□ 0.32
SMARCA4-217ENST00000591595 NEFLP07196 543 aa17.04■□□□□ 0.32
SMARCA4-217ENST00000591595 ATP1B4Q9UN42 357 aaPredicted RBP17.02■□□□□ 0.32
SMARCA4-217ENST00000591595 CCNB3Q8WWL7 1395 aa17.01■□□□□ 0.31
SMARCA4-217ENST00000591595 GLIPR1L2Q4G1C9 344 aa17.01■□□□□ 0.31
SMARCA4-217ENST00000591595 ZMYND15Q9H091 742 aa17■□□□□ 0.31
SMARCA4-217ENST00000591595 ERICH3Q5RHP9 1530 aa17■□□□□ 0.31
SMARCA4-217ENST00000591595 RTL5Q5HYW3 569 aaPredicted RBP16.96■□□□□ 0.31
SMARCA4-217ENST00000591595 FAM50AQ14320 339 aaKnown RBP16.96■□□□□ 0.31
SMARCA4-217ENST00000591595 RRBP1Q9P2E9 1410 aaKnown RBP16.94■□□□□ 0.3
SMARCA4-217ENST00000591595 CDK11AQ9UQ88 783 aaPredicted RBP16.94■□□□□ 0.3
SMARCA4-217ENST00000591595 NOP58Q9Y2X3 529 aaKnown RBP16.92■□□□□ 0.3
SMARCA4-217ENST00000591595 CUX1P39880 1505 aa16.92■□□□□ 0.3
SMARCA4-217ENST00000591595 BIVM-ERCC5R4GMW8 1640 aa16.92■□□□□ 0.3
SMARCA4-217ENST00000591595 P3H3Q8IVL6 736 aa16.92■□□□□ 0.3
SMARCA4-217ENST00000591595 TIMELESSQ9UNS1 1208 aa16.91■□□□□ 0.3
SMARCA4-217ENST00000591595 VSIG10Q8N0Z9 540 aa16.91■□□□□ 0.3
SMARCA4-217ENST00000591595 RAB3GAP2Q9H2M9 1393 aa16.9■□□□□ 0.3
SMARCA4-217ENST00000591595 ARHGAP35Q9NRY4 1499 aa16.9■□□□□ 0.3
SMARCA4-217ENST00000591595 KCNH8Q96L42 1107 aa16.88■□□□□ 0.29
SMARCA4-217ENST00000591595 DDX10Q13206 875 aaKnown RBP16.87■□□□□ 0.29
SMARCA4-217ENST00000591595 CUX2O14529 1486 aa16.86■□□□□ 0.29
SMARCA4-217ENST00000591595 SIN3AQ96ST3 1273 aa16.86■□□□□ 0.29
SMARCA4-217ENST00000591595 NCAPD3P42695 1498 aa16.85■□□□□ 0.29
SMARCA4-217ENST00000591595 A0A0U1RQG5 324 aaPredicted RBP16.83■□□□□ 0.28
SMARCA4-217ENST00000591595 PDE4CQ08493 712 aa16.82■□□□□ 0.28
SMARCA4-217ENST00000591595 PAK3O75914 559 aaPredicted RBP16.81■□□□□ 0.28
SMARCA4-217ENST00000591595 HIRIP3Q9BW71 556 aaPredicted RBP16.81■□□□□ 0.28
SMARCA4-217ENST00000591595 RSPH6AQ9H0K4 717 aa16.81■□□□□ 0.28
SMARCA4-217ENST00000591595 CARMIL1Q5VZK9 1371 aa16.81■□□□□ 0.28
SMARCA4-217ENST00000591595 IGF1RP08069 1367 aa16.8■□□□□ 0.28
SMARCA4-217ENST00000591595 CFTRP13569 1480 aa16.8■□□□□ 0.28
SMARCA4-217ENST00000591595 C11orf95C9JLR9 678 aaPredicted RBP16.8■□□□□ 0.28
SMARCA4-217ENST00000591595 SETD5Q9C0A6 1442 aa16.8■□□□□ 0.28
SMARCA4-217ENST00000591595 HMGXB3Q12766 1538 aa16.78■□□□□ 0.28
SMARCA4-217ENST00000591595 FGD1P98174 961 aa16.77■□□□□ 0.27
SMARCA4-217ENST00000591595 PHLDB1Q86UU1 1377 aa16.74■□□□□ 0.27
SMARCA4-217ENST00000591595 PDIA4P13667 645 aaKnown RBP16.72■□□□□ 0.27
SMARCA4-217ENST00000591595 LRRC9Q6ZRR7 1453 aa16.71■□□□□ 0.26
SMARCA4-217ENST00000591595 AAMPQ13685 434 aa16.71■□□□□ 0.26
SMARCA4-217ENST00000591595 TIAM1Q13009 1591 aa16.7■□□□□ 0.26
SMARCA4-217ENST00000591595 MAPKBP1O60336 1514 aa16.7■□□□□ 0.26
SMARCA4-217ENST00000591595 FHAD1B1AJZ9 1412 aa16.7■□□□□ 0.26
SMARCA4-217ENST00000591595 ANP32CO43423 234 aa16.7■□□□□ 0.26
SMARCA4-217ENST00000591595 RBM10P98175 930 aaKnown RBP16.7■□□□□ 0.26
SMARCA4-217ENST00000591595 TRIM52Q96A61 297 aa16.7■□□□□ 0.26
SMARCA4-217ENST00000591595 BRPF3Q9ULD4 1205 aa16.69■□□□□ 0.26
SMARCA4-217ENST00000591595 WASHC2AQ641Q2 1341 aa16.68■□□□□ 0.26
SMARCA4-217ENST00000591595 CADPSQ9ULU8 1353 aa16.67■□□□□ 0.26
SMARCA4-217ENST00000591595 FGD5Q6ZNL6 1462 aa16.67■□□□□ 0.26
SMARCA4-217ENST00000591595 WASHC2CQ9Y4E1 1318 aa16.65■□□□□ 0.26
SMARCA4-217ENST00000591595 WDR97A6NE52 1622 aa16.65■□□□□ 0.26
SMARCA4-217ENST00000591595 FHOD3Q2V2M9 1422 aa16.64■□□□□ 0.25
SMARCA4-217ENST00000591595 TONSLQ96HA7 1378 aa16.63■□□□□ 0.25
SMARCA4-217ENST00000591595 PPP1R15AO75807 674 aaPredicted RBP16.63■□□□□ 0.25
SMARCA4-217ENST00000591595 MAP3K1Q13233 1512 aa16.6■□□□□ 0.25
SMARCA4-217ENST00000591595 BCL11BQ9C0K0 894 aaPredicted RBP16.6■□□□□ 0.25
SMARCA4-217ENST00000591595 NEFMP07197 916 aa16.57■□□□□ 0.24
SMARCA4-217ENST00000591595 MTUS2Q5JR59 1369 aa16.57■□□□□ 0.24
SMARCA4-217ENST00000591595 ZBTB47Q9UFB7 747 aaPredicted RBP16.57■□□□□ 0.24
SMARCA4-217ENST00000591595 IPO9Q96P70 1041 aaKnown RBP16.56■□□□□ 0.24
SMARCA4-217ENST00000591595 PCF11O94913 1555 aaKnown RBP16.55■□□□□ 0.24
SMARCA4-217ENST00000591595 CCER2I3L3R5 266 aa16.54■□□□□ 0.24
SMARCA4-217ENST00000591595 AEBP2Q6ZN18 517 aaPredicted RBP16.54■□□□□ 0.24
SMARCA4-217ENST00000591595 ANP32AP39687 249 aaKnown RBP16.54■□□□□ 0.24
SMARCA4-217ENST00000591595 USP35Q9P2H5 1018 aa16.53■□□□□ 0.24
SMARCA4-217ENST00000591595 RAD54L2Q9Y4B4 1467 aa16.53■□□□□ 0.24
SMARCA4-217ENST00000591595 FANCD2Q9BXW9 1451 aa16.51■□□□□ 0.23
SMARCA4-217ENST00000591595 IRX6P78412 446 aaPredicted RBP16.51■□□□□ 0.23
SMARCA4-217ENST00000591595 HSP90AA2PQ14568 343 aaPredicted RBP16.49■□□□□ 0.23
SMARCA4-217ENST00000591595 FAM43AQ8N2R8 423 aa16.49■□□□□ 0.23
SMARCA4-217ENST00000591595 HNRNPUQ00839 825 aaKnown RBP eCLIP16.48■□□□□ 0.23
SMARCA4-217ENST00000591595 CHIC2Q9UKJ5 165 aa16.48■□□□□ 0.23
SMARCA4-217ENST00000591595 CASKIN1Q8WXD9 1431 aa16.48■□□□□ 0.23
SMARCA4-217ENST00000591595 FGD6Q6ZV73 1430 aa16.47■□□□□ 0.23
SMARCA4-217ENST00000591595 FYCO1Q9BQS8 1478 aa16.47■□□□□ 0.23
SMARCA4-217ENST00000591595 CCDC18Q5T9S5 1454 aa16.46■□□□□ 0.23
SMARCA4-217ENST00000591595 FMN1Q68DA7 1419 aa16.46■□□□□ 0.23
SMARCA4-217ENST00000591595 RRP7BPQ9NSQ0 103 aa16.46■□□□□ 0.23
SMARCA4-217ENST00000591595 RRP9O43818 475 aaKnown RBP16.44■□□□□ 0.22
SMARCA4-217ENST00000591595 PPP4R2Q9NY27 417 aa16.43■□□□□ 0.22
SMARCA4-217ENST00000591595 CFAP43Q8NDM7 1665 aa16.43■□□□□ 0.22
SMARCA4-217ENST00000591595 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.42■□□□□ 0.22
SMARCA4-217ENST00000591595 ARID3CA6NKF2 412 aa16.41■□□□□ 0.22
SMARCA4-217ENST00000591595 GSE1Q14687 1217 aa16.41■□□□□ 0.22
SMARCA4-217ENST00000591595 KLHL34Q8N239 644 aa16.41■□□□□ 0.22
SMARCA4-217ENST00000591595 POLA1P09884 1462 aaPredicted RBP16.41■□□□□ 0.22
SMARCA4-217ENST00000591595 TDRD9Q8NDG6 1382 aaKnown RBP16.4■□□□□ 0.22
SMARCA4-217ENST00000591595 UACAQ9BZF9 1416 aa16.4■□□□□ 0.22
SMARCA4-217ENST00000591595 EFCAB5A4FU69 1503 aa16.4■□□□□ 0.22
SMARCA4-217ENST00000591595 PRDM2Q13029 1718 aa16.39■□□□□ 0.21
SMARCA4-217ENST00000591595 LAS1LQ9Y4W2 734 aaKnown RBP16.39■□□□□ 0.21
SMARCA4-217ENST00000591595 TAF7LQ5H9L4 462 aa16.38■□□□□ 0.21
SMARCA4-217ENST00000591595 PTPRKQ15262 1439 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms