RNA–Protein interactions for RNA: ENST00000590619.1

DNMT1-222, Transcript of DNA methyltransferase 1, human

TSL 1 (best)

Gene DNMT1, Length 231 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-222	ENST00000590619	HECW2	Q9P2P5	1572 aa		12.13	□□□□□ -0.47
DNMT1-222	ENST00000590619	MAPKBP1	O60336	1514 aa		12.13	□□□□□ -0.47
DNMT1-222	ENST00000590619	DIP2B	Q9P265	1576 aa		12.13	□□□□□ -0.47
DNMT1-222	ENST00000590619	FHAD1	B1AJZ9	1412 aa		12.11	□□□□□ -0.47
DNMT1-222	ENST00000590619	ABCA5	Q8WWZ7	1642 aa		12.1	□□□□□ -0.47
DNMT1-222	ENST00000590619	TSPOAP1	O95153	1857 aa		12.07	□□□□□ -0.48
DNMT1-222	ENST00000590619	COL17A1	Q9UMD9	1497 aa	Predicted RBP	12.06	□□□□□ -0.48
DNMT1-222	ENST00000590619	ADAMTS12	P58397	1594 aa		12.05	□□□□□ -0.48
DNMT1-222	ENST00000590619	ADCY10	Q96PN6	1610 aa		12.04	□□□□□ -0.48
DNMT1-222	ENST00000590619	LMTK3	Q96Q04	1460 aa		12.02	□□□□□ -0.48
DNMT1-222	ENST00000590619	ILDR2	Q71H61	639 aa		12.02	□□□□□ -0.49
DNMT1-222	ENST00000590619	WRN	Q14191	1432 aa	Predicted RBP eCLIP	12.02	□□□□□ -0.49
DNMT1-222	ENST00000590619	SOCS7	O14512	581 aa		12.01	□□□□□ -0.49
DNMT1-222	ENST00000590619	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.97	□□□□□ -0.49
DNMT1-222	ENST00000590619	ERICH3	Q5RHP9	1530 aa		11.95	□□□□□ -0.5
DNMT1-222	ENST00000590619	PTPRG	P23470	1445 aa		11.94	□□□□□ -0.5
DNMT1-222	ENST00000590619	ASXL2	Q76L83	1435 aa		11.94	□□□□□ -0.5
DNMT1-222	ENST00000590619	PPRC1	Q5VV67	1664 aa	Known RBP	11.92	□□□□□ -0.5
DNMT1-222	ENST00000590619	PLB1	Q6P1J6	1458 aa		11.92	□□□□□ -0.5
DNMT1-222	ENST00000590619	GLI2	P10070	1586 aa		11.92	□□□□□ -0.5
DNMT1-222	ENST00000590619	KIAA0586	Q9BVV6	1533 aa		11.89	□□□□□ -0.51
DNMT1-222	ENST00000590619	ABCC2	Q92887	1545 aa		11.88	□□□□□ -0.51
DNMT1-222	ENST00000590619	DISP3	Q9P2K9	1392 aa		11.88	□□□□□ -0.51
DNMT1-222	ENST00000590619	RUSC2	Q8N2Y8	1516 aa		11.87	□□□□□ -0.51
DNMT1-222	ENST00000590619	TOP2B	Q02880	1626 aa		11.86	□□□□□ -0.51
DNMT1-222	ENST00000590619	CERK	Q8TCT0	537 aa		11.85	□□□□□ -0.51
DNMT1-222	ENST00000590619	EPRS	P07814	1512 aa	Known RBP	11.85	□□□□□ -0.51
DNMT1-222	ENST00000590619	TNIK	Q9UKE5	1360 aa		11.84	□□□□□ -0.51
DNMT1-222	ENST00000590619	TEX14	Q8IWB6	1497 aa		11.83	□□□□□ -0.52
DNMT1-222	ENST00000590619	IGF1R	P08069	1367 aa		11.81	□□□□□ -0.52
DNMT1-222	ENST00000590619	UACA	Q9BZF9	1416 aa		11.8	□□□□□ -0.52
DNMT1-222	ENST00000590619	UHRF1BP1L	A0JNW5	1464 aa		11.8	□□□□□ -0.52
DNMT1-222	ENST00000590619	MAP3K4	Q9Y6R4	1608 aa		11.78	□□□□□ -0.52
DNMT1-222	ENST00000590619	PTPRM	P28827	1452 aa		11.78	□□□□□ -0.52
DNMT1-222	ENST00000590619	CARMIL2	Q6F5E8	1435 aa		11.77	□□□□□ -0.52
DNMT1-222	ENST00000590619	HSPA2	P54652	639 aa		11.77	□□□□□ -0.53
DNMT1-222	ENST00000590619	KCNH8	Q96L42	1107 aa		11.77	□□□□□ -0.53
DNMT1-222	ENST00000590619	BIVM-ERCC5	R4GMW8	1640 aa		11.76	□□□□□ -0.53
DNMT1-222	ENST00000590619	KDM5B	Q9UGL1	1544 aa		11.76	□□□□□ -0.53
DNMT1-222	ENST00000590619	CD109	Q6YHK3	1445 aa		11.74	□□□□□ -0.53
DNMT1-222	ENST00000590619	CUL7	Q14999	1698 aa		11.73	□□□□□ -0.53
DNMT1-222	ENST00000590619	MAGI3	Q5TCQ9	1506 aa		11.71	□□□□□ -0.53
DNMT1-222	ENST00000590619	PCF11	O94913	1555 aa	Known RBP	11.7	□□□□□ -0.54
DNMT1-222	ENST00000590619	KIF21B	O75037	1637 aa		11.69	□□□□□ -0.54
DNMT1-222	ENST00000590619	CARMIL1	Q5VZK9	1371 aa		11.68	□□□□□ -0.54
DNMT1-222	ENST00000590619	RAPGEF3	O95398	923 aa		11.68	□□□□□ -0.54
DNMT1-222	ENST00000590619	ADAMTSL3	P82987	1691 aa		11.68	□□□□□ -0.54
DNMT1-222	ENST00000590619	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.67	□□□□□ -0.54
DNMT1-222	ENST00000590619	DISP1	Q96F81	1524 aa		11.67	□□□□□ -0.54
DNMT1-222	ENST00000590619	WDR7	Q9Y4E6	1490 aa		11.67	□□□□□ -0.54
DNMT1-222	ENST00000590619	PLPPR3	Q6T4P5	718 aa		11.66	□□□□□ -0.54
DNMT1-222	ENST00000590619	ARAP3	Q8WWN8	1544 aa		11.65	□□□□□ -0.55
DNMT1-222	ENST00000590619	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.64	□□□□□ -0.55
DNMT1-222	ENST00000590619	SUPT5H	O00267	1087 aa	Known RBP	11.64	□□□□□ -0.55
DNMT1-222	ENST00000590619	KIF27	Q86VH2	1401 aa		11.63	□□□□□ -0.55
DNMT1-222	ENST00000590619	IQGAP2	Q13576	1575 aa		11.58	□□□□□ -0.55
DNMT1-222	ENST00000590619	PHLDB1	Q86UU1	1377 aa		11.58	□□□□□ -0.56
DNMT1-222	ENST00000590619	DMRT2	Q9Y5R5	561 aa		11.57	□□□□□ -0.56
DNMT1-222	ENST00000590619	MADD	Q8WXG6	1647 aa		11.57	□□□□□ -0.56
DNMT1-222	ENST00000590619	CFAP43	Q8NDM7	1665 aa		11.56	□□□□□ -0.56
DNMT1-222	ENST00000590619	BCORL1	Q5H9F3	1711 aa		11.56	□□□□□ -0.56
DNMT1-222	ENST00000590619	SPATA31D1	Q6ZQQ2	1576 aa		11.56	□□□□□ -0.56
DNMT1-222	ENST00000590619	UGGT2	Q9NYU1	1516 aa		11.55	□□□□□ -0.56
DNMT1-222	ENST00000590619	ARID3C	A6NKF2	412 aa		11.54	□□□□□ -0.56
DNMT1-222	ENST00000590619	YEATS2	Q9ULM3	1422 aa		11.52	□□□□□ -0.57
DNMT1-222	ENST00000590619	MLEC	Q14165	292 aa		11.51	□□□□□ -0.57
DNMT1-222	ENST00000590619	CEBPA	P49715	358 aa	Predicted RBP	11.5	□□□□□ -0.57
DNMT1-222	ENST00000590619	RIMS1	Q86UR5	1692 aa	Known RBP	11.49	□□□□□ -0.57
DNMT1-222	ENST00000590619	KIAA0556	O60303	1618 aa		11.49	□□□□□ -0.57
DNMT1-222	ENST00000590619	ABCA8	O94911	1581 aa		11.47	□□□□□ -0.57
DNMT1-222	ENST00000590619	ATP10B	O94823	1461 aa		11.47	□□□□□ -0.57
DNMT1-222	ENST00000590619	NEO1	Q92859	1461 aa		11.46	□□□□□ -0.57
DNMT1-222	ENST00000590619	POGZ	Q7Z3K3	1410 aa		11.45	□□□□□ -0.58
DNMT1-222	ENST00000590619	RAPGEF2	Q9Y4G8	1499 aa		11.44	□□□□□ -0.58
DNMT1-222	ENST00000590619	FRMPD1	Q5SYB0	1578 aa		11.43	□□□□□ -0.58
DNMT1-222	ENST00000590619	P3H3	Q8IVL6	736 aa		11.42	□□□□□ -0.58
DNMT1-222	ENST00000590619	PTPRT	O14522	1441 aa		11.42	□□□□□ -0.58
DNMT1-222	ENST00000590619	STRC	Q7RTU9	1775 aa		11.41	□□□□□ -0.58
DNMT1-222	ENST00000590619	DENND4B	O75064	1496 aa	Predicted RBP	11.41	□□□□□ -0.58
DNMT1-222	ENST00000590619	FHOD3	Q2V2M9	1422 aa		11.41	□□□□□ -0.58
DNMT1-222	ENST00000590619	AKNA	Q7Z591	1439 aa		11.41	□□□□□ -0.58
DNMT1-222	ENST00000590619	ABCA9	Q8IUA7	1624 aa		11.4	□□□□□ -0.58
DNMT1-222	ENST00000590619	UBAP1L	F5GYI3	381 aa		11.4	□□□□□ -0.58
DNMT1-222	ENST00000590619	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	11.4	□□□□□ -0.58
DNMT1-222	ENST00000590619	HNRNPUL2	Q1KMD3	747 aa	Known RBP	11.4	□□□□□ -0.58
DNMT1-222	ENST00000590619	FAM9A	Q8IZU1	332 aa	Predicted RBP	11.4	□□□□□ -0.58
DNMT1-222	ENST00000590619	FANCA	O15360	1455 aa		11.39	□□□□□ -0.59
DNMT1-222	ENST00000590619	LTBP4	Q8N2S1	1624 aa		11.39	□□□□□ -0.59
DNMT1-222	ENST00000590619	GOLGA3	Q08378	1498 aa		11.38	□□□□□ -0.59
DNMT1-222	ENST00000590619	ARHGEF40	Q8TER5	1519 aa		11.36	□□□□□ -0.59
DNMT1-222	ENST00000590619	IQSEC2	Q5JU85	1478 aa		11.36	□□□□□ -0.59
DNMT1-222	ENST00000590619	SIGLEC1	Q9BZZ2	1709 aa		11.35	□□□□□ -0.59
DNMT1-222	ENST00000590619	UHRF1BP1	Q6BDS2	1440 aa		11.35	□□□□□ -0.59
DNMT1-222	ENST00000590619	PLEKHD1	A6NEE1	506 aa		11.34	□□□□□ -0.59
DNMT1-222	ENST00000590619	HSPA1L	P34931	641 aa		11.34	□□□□□ -0.59
DNMT1-222	ENST00000590619	TTC37	Q6PGP7	1564 aa		11.33	□□□□□ -0.6
DNMT1-222	ENST00000590619	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.32	□□□□□ -0.6
DNMT1-222	ENST00000590619	MAGI2	Q86UL8	1455 aa		11.32	□□□□□ -0.6
DNMT1-222	ENST00000590619	ZFYVE16	Q7Z3T8	1539 aa		11.31	□□□□□ -0.6
DNMT1-222	ENST00000590619	ARHGEF12	Q9NZN5	1544 aa		11.31	□□□□□ -0.6

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