RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 RANGAP1P46060 587 aaPredicted RBP15.88■□□□□ 0.13
VPS25-203ENST00000589520 WDR62O43379 1518 aa15.88■□□□□ 0.13
VPS25-203ENST00000589520 FHAD1B1AJZ9 1412 aa15.85■□□□□ 0.13
VPS25-203ENST00000589520 EFCAB5A4FU69 1503 aa15.84■□□□□ 0.13
VPS25-203ENST00000589520 MAP3K1Q13233 1512 aa15.83■□□□□ 0.12
VPS25-203ENST00000589520 GRIN2BQ13224 1484 aa15.8■□□□□ 0.12
VPS25-203ENST00000589520 OSCARQ8IYS5 282 aa15.77■□□□□ 0.12
VPS25-203ENST00000589520 TRHP20396 242 aaPredicted RBP15.76■□□□□ 0.11
VPS25-203ENST00000589520 AQRO60306 1485 aaKnown RBP eCLIP15.76■□□□□ 0.114e-9■■■■□ 22.9
VPS25-203ENST00000589520 CTTNBP2Q8WZ74 1663 aa15.74■□□□□ 0.11
VPS25-203ENST00000589520 FMN1Q68DA7 1419 aa15.74■□□□□ 0.11
VPS25-203ENST00000589520 TTBK1Q5TCY1 1321 aaPredicted RBP15.71■□□□□ 0.11
VPS25-203ENST00000589520 PBRM1Q86U86 1689 aa15.7■□□□□ 0.1
VPS25-203ENST00000589520 CASKIN1Q8WXD9 1431 aa15.69■□□□□ 0.1
VPS25-203ENST00000589520 ADAMTS12P58397 1594 aa15.69■□□□□ 0.1
VPS25-203ENST00000589520 KANK4Q5T7N3 995 aaPredicted RBP15.68■□□□□ 0.1
VPS25-203ENST00000589520 ILDR1Q86SU0 546 aaPredicted RBP15.68■□□□□ 0.1
VPS25-203ENST00000589520 ARHGEF11O15085 1522 aa15.68■□□□□ 0.1
VPS25-203ENST00000589520 FYCO1Q9BQS8 1478 aa15.67■□□□□ 0.1
VPS25-203ENST00000589520 CCER1Q8TC90 406 aaPredicted RBP15.66■□□□□ 0.1
VPS25-203ENST00000589520 RRBP1Q9P2E9 1410 aaKnown RBP15.66■□□□□ 0.1
VPS25-203ENST00000589520 TIAM1Q13009 1591 aa15.66■□□□□ 0.1
VPS25-203ENST00000589520 SAMD9Q5K651 1589 aa15.65■□□□□ 0.1
VPS25-203ENST00000589520 MAGI1Q96QZ7 1491 aaPredicted RBP15.65■□□□□ 0.1
VPS25-203ENST00000589520 ZNF608Q9ULD9 1512 aaPredicted RBP15.64■□□□□ 0.09
VPS25-203ENST00000589520 FHOD3Q2V2M9 1422 aa15.64■□□□□ 0.09
VPS25-203ENST00000589520 P3H3Q8IVL6 736 aa15.62■□□□□ 0.09
VPS25-203ENST00000589520 LRRC9Q6ZRR7 1453 aa15.62■□□□□ 0.09
VPS25-203ENST00000589520 KIAA0586Q9BVV6 1533 aa15.61■□□□□ 0.09
VPS25-203ENST00000589520 IQGAP2Q13576 1575 aa15.59■□□□□ 0.09
VPS25-203ENST00000589520 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.59■□□□□ 0.09
VPS25-203ENST00000589520 CCNB3Q8WWL7 1395 aa15.59■□□□□ 0.09
VPS25-203ENST00000589520 SNAPC4Q5SXM2 1469 aa15.59■□□□□ 0.09
VPS25-203ENST00000589520 EIF4G3O43432 1585 aaKnown RBP15.58■□□□□ 0.09
VPS25-203ENST00000589520 UGGT2Q9NYU1 1516 aa15.58■□□□□ 0.08
VPS25-203ENST00000589520 SYNJ2O15056 1496 aa15.57■□□□□ 0.08
VPS25-203ENST00000589520 GRIN2AQ12879 1464 aa15.57■□□□□ 0.08
VPS25-203ENST00000589520 PCF11O94913 1555 aaKnown RBP15.57■□□□□ 0.08
VPS25-203ENST00000589520 HNRNPUL2Q1KMD3 747 aaKnown RBP15.56■□□□□ 0.08
VPS25-203ENST00000589520 CYB5RLQ6IPT4 315 aa15.56■□□□□ 0.08
VPS25-203ENST00000589520 CHMP7Q8WUX9 453 aaPredicted RBP15.56■□□□□ 0.08
VPS25-203ENST00000589520 CFAP43Q8NDM7 1665 aa15.56■□□□□ 0.08
VPS25-203ENST00000589520 ATP1B4Q9UN42 357 aaPredicted RBP15.55■□□□□ 0.08
VPS25-203ENST00000589520 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.54■□□□□ 0.08
VPS25-203ENST00000589520 CCDC18Q5T9S5 1454 aa15.52■□□□□ 0.08
VPS25-203ENST00000589520 CLSPNQ9HAW4 1339 aa15.52■□□□□ 0.08
VPS25-203ENST00000589520 NUP160Q12769 1436 aa15.48■□□□□ 0.07
VPS25-203ENST00000589520 MTUS2Q5JR59 1369 aa15.48■□□□□ 0.07
VPS25-203ENST00000589520 HECW1Q76N89 1606 aa15.45■□□□□ 0.06
VPS25-203ENST00000589520 PHLDB1Q86UU1 1377 aa15.45■□□□□ 0.06
VPS25-203ENST00000589520 CARMIL2Q6F5E8 1435 aa15.44■□□□□ 0.06
VPS25-203ENST00000589520 EHBP1L1Q8N3D4 1523 aa15.43■□□□□ 0.06
VPS25-203ENST00000589520 KIAA0556O60303 1618 aa15.42■□□□□ 0.06
VPS25-203ENST00000589520 DISP1Q96F81 1524 aa15.42■□□□□ 0.06
VPS25-203ENST00000589520 FBLN2P98095 1184 aa15.41■□□□□ 0.06
VPS25-203ENST00000589520 JPH4Q96JJ6 628 aa15.41■□□□□ 0.06
VPS25-203ENST00000589520 CDK11AQ9UQ88 783 aaPredicted RBP15.41■□□□□ 0.06
VPS25-203ENST00000589520 EPRSP07814 1512 aaKnown RBP15.39■□□□□ 0.05
VPS25-203ENST00000589520 CEP170Q5SW79 1584 aa15.38■□□□□ 0.05
VPS25-203ENST00000589520 FAM50AQ14320 339 aaKnown RBP15.37■□□□□ 0.05
VPS25-203ENST00000589520 FGD6Q6ZV73 1430 aa15.36■□□□□ 0.05
VPS25-203ENST00000589520 NCOA2Q15596 1464 aa15.36■□□□□ 0.05
VPS25-203ENST00000589520 SUPT6HQ7KZ85 1726 aaKnown RBP15.36■□□□□ 0.05
VPS25-203ENST00000589520 MYOM3Q5VTT5 1437 aa15.35■□□□□ 0.05
VPS25-203ENST00000589520 SETD5Q9C0A6 1442 aa15.35■□□□□ 0.05
VPS25-203ENST00000589520 ACIN1Q9UKV3 1341 aaKnown RBP15.33■□□□□ 0.04
VPS25-203ENST00000589520 DHX57Q6P158 1386 aaKnown RBP15.33■□□□□ 0.04
VPS25-203ENST00000589520 MIA2Q96PC5 1412 aa15.33■□□□□ 0.04
VPS25-203ENST00000589520 RAPGEF6Q8TEU7 1601 aa15.31■□□□□ 0.04
VPS25-203ENST00000589520 CHD1O14646 1710 aa15.3■□□□□ 0.04
VPS25-203ENST00000589520 ITGAEP38570 1179 aa15.3■□□□□ 0.04
VPS25-203ENST00000589520 LRRIQ1Q96JM4 1722 aa15.29■□□□□ 0.04
VPS25-203ENST00000589520 NUP153P49790 1475 aaKnown RBP15.28■□□□□ 0.04
VPS25-203ENST00000589520 RAB3GAP2Q9H2M9 1393 aa15.28■□□□□ 0.04
VPS25-203ENST00000589520 TCOF1Q13428 1488 aaKnown RBP15.27■□□□□ 0.04
VPS25-203ENST00000589520 MAGI3Q5TCQ9 1506 aa15.25■□□□□ 0.03
VPS25-203ENST00000589520 TROQ12816 1431 aaPredicted RBP15.23■□□□□ 0.03
VPS25-203ENST00000589520 PRG4Q92954 1404 aaPredicted RBP15.23■□□□□ 0.03
VPS25-203ENST00000589520 CDK13Q14004 1512 aaKnown RBP15.22■□□□□ 0.03
VPS25-203ENST00000589520 TIMELESSQ9UNS1 1208 aa15.22■□□□□ 0.03
VPS25-203ENST00000589520 PTPRGP23470 1445 aa15.22■□□□□ 0.03
VPS25-203ENST00000589520 PTPN23Q9H3S7 1636 aa15.21■□□□□ 0.03
VPS25-203ENST00000589520 HFM1A2PYH4 1435 aa15.21■□□□□ 0.03
VPS25-203ENST00000589520 PLEKHD1A6NEE1 506 aa15.21■□□□□ 0.03
VPS25-203ENST00000589520 ABCA8O94911 1581 aa15.2■□□□□ 0.02
VPS25-203ENST00000589520 AKNAQ7Z591 1439 aa15.2■□□□□ 0.02
VPS25-203ENST00000589520 PLB1Q6P1J6 1458 aa15.2■□□□□ 0.02
VPS25-203ENST00000589520 ZNF316A6NFI3 1004 aaPredicted RBP15.18■□□□□ 0.02
VPS25-203ENST00000589520 SHROOM2Q13796 1616 aa15.16■□□□□ 0.02
VPS25-203ENST00000589520 ROCK1Q13464 1354 aa15.14■□□□□ 0.01
VPS25-203ENST00000589520 PTPRKQ15262 1439 aa15.14■□□□□ 0.01
VPS25-203ENST00000589520 ATP10BO94823 1461 aa15.14■□□□□ 0.01
VPS25-203ENST00000589520 NAIPQ13075 1403 aa15.13■□□□□ 0.01
VPS25-203ENST00000589520 UACAQ9BZF9 1416 aa15.13■□□□□ 0.01
VPS25-203ENST00000589520 ADCY10Q96PN6 1610 aa15.13■□□□□ 0.01
VPS25-203ENST00000589520 ARID3CA6NKF2 412 aa15.12■□□□□ 0.01
VPS25-203ENST00000589520 CFDP1Q9UEE9 299 aaPredicted RBP15.12■□□□□ 0.01
VPS25-203ENST00000589520 GPATCH8Q9UKJ3 1502 aaKnown RBP15.09■□□□□ 0.01
VPS25-203ENST00000589520 MAPKBP1O60336 1514 aa15.08■□□□□ 0.01
VPS25-203ENST00000589520 CLASP1Q7Z460 1538 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms