RNA–Protein interactions for RNA: ENST00000587604.1

DNMT1-213, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-213ENST00000587604 IGF1RP08069 1367 aa24.73■■□□□ 1.55
DNMT1-213ENST00000587604 KIF13AQ9H1H9 1805 aa24.72■■□□□ 1.55
DNMT1-213ENST00000587604 KIF27Q86VH2 1401 aa24.7■■□□□ 1.55
DNMT1-213ENST00000587604 NPM1P06748 294 aaKnown RBP eCLIP24.68■■□□□ 1.54
DNMT1-213ENST00000587604 KIAA0586Q9BVV6 1533 aa24.67■■□□□ 1.54
DNMT1-213ENST00000587604 CUL7Q14999 1698 aa24.65■■□□□ 1.54
DNMT1-213ENST00000587604 FAM69CQ0P6D2 419 aa24.61■■□□□ 1.53
DNMT1-213ENST00000587604 ABCC10Q5T3U5 1492 aa24.6■■□□□ 1.53
DNMT1-213ENST00000587604 MAPKBP1O60336 1514 aa24.59■■□□□ 1.53
DNMT1-213ENST00000587604 ADCY10Q96PN6 1610 aa24.58■■□□□ 1.53
DNMT1-213ENST00000587604 CARMIL1Q5VZK9 1371 aa24.54■■□□□ 1.52
DNMT1-213ENST00000587604 DIP2BQ9P265 1576 aa24.5■■□□□ 1.51
DNMT1-213ENST00000587604 PTPRGP23470 1445 aa24.48■■□□□ 1.51
DNMT1-213ENST00000587604 CARMIL2Q6F5E8 1435 aa24.44■■□□□ 1.5
DNMT1-213ENST00000587604 TNIKQ9UKE5 1360 aa24.42■■□□□ 1.5
DNMT1-213ENST00000587604 TTBK1Q5TCY1 1321 aaPredicted RBP24.39■■□□□ 1.5
DNMT1-213ENST00000587604 IQGAP2Q13576 1575 aa24.38■■□□□ 1.49
DNMT1-213ENST00000587604 TSPOAP1O95153 1857 aa24.38■■□□□ 1.49
DNMT1-213ENST00000587604 ABCC2Q92887 1545 aa24.35■■□□□ 1.49
DNMT1-213ENST00000587604 KDM6BO15054 1643 aa24.34■■□□□ 1.49
DNMT1-213ENST00000587604 UHRF1BP1LA0JNW5 1464 aa24.3■■□□□ 1.48
DNMT1-213ENST00000587604 RAPGEF2Q9Y4G8 1499 aa24.3■■□□□ 1.48
DNMT1-213ENST00000587604 DISP1Q96F81 1524 aa24.3■■□□□ 1.48
DNMT1-213ENST00000587604 ASXL2Q76L83 1435 aa24.28■■□□□ 1.48
DNMT1-213ENST00000587604 UACAQ9BZF9 1416 aa24.28■■□□□ 1.48
DNMT1-213ENST00000587604 PLB1Q6P1J6 1458 aa24.28■■□□□ 1.48
DNMT1-213ENST00000587604 UGGT2Q9NYU1 1516 aa24.25■■□□□ 1.47
DNMT1-213ENST00000587604 GLI2P10070 1586 aa24.24■■□□□ 1.47
DNMT1-213ENST00000587604 KDM4FA0A1W2PPD8 638 aa24.19■■□□□ 1.46
DNMT1-213ENST00000587604 KDM5BQ9UGL1 1544 aa24.19■■□□□ 1.46
DNMT1-213ENST00000587604 PPRC1Q5VV67 1664 aaKnown RBP24.17■■□□□ 1.46
DNMT1-213ENST00000587604 KIAA0556O60303 1618 aa24.16■■□□□ 1.46
DNMT1-213ENST00000587604 EPRSP07814 1512 aaKnown RBP24.13■■□□□ 1.45
DNMT1-213ENST00000587604 ZCCHC11Q5TAX3 1644 aaKnown RBP24.11■■□□□ 1.45
DNMT1-213ENST00000587604 CTTNBP2Q8WZ74 1663 aa24.08■■□□□ 1.45
DNMT1-213ENST00000587604 MAP3K4Q9Y6R4 1608 aa24.08■■□□□ 1.45
DNMT1-213ENST00000587604 GOLGA3Q08378 1498 aa24.05■■□□□ 1.44
DNMT1-213ENST00000587604 TEX14Q8IWB6 1497 aa24.05■■□□□ 1.44
DNMT1-213ENST00000587604 COL17A1Q9UMD9 1497 aaPredicted RBP24.04■■□□□ 1.44
DNMT1-213ENST00000587604 PRXQ9BXM0 1461 aa24.01■■□□□ 1.43
DNMT1-213ENST00000587604 WDR7Q9Y4E6 1490 aa24.01■■□□□ 1.43
DNMT1-213ENST00000587604 ABCA8O94911 1581 aa23.97■■□□□ 1.43
DNMT1-213ENST00000587604 ADGRL1O94910 1474 aa23.93■■□□□ 1.42
DNMT1-213ENST00000587604 KCNH8Q96L42 1107 aa23.92■■□□□ 1.42
DNMT1-213ENST00000587604 CD109Q6YHK3 1445 aa23.91■■□□□ 1.42
DNMT1-213ENST00000587604 MAGI3Q5TCQ9 1506 aa23.89■■□□□ 1.42
DNMT1-213ENST00000587604 FAM9AQ8IZU1 332 aaPredicted RBP23.89■■□□□ 1.41
DNMT1-213ENST00000587604 CFAP43Q8NDM7 1665 aa23.89■■□□□ 1.41
DNMT1-213ENST00000587604 CSRNP3Q8WYN3 585 aa23.83■■□□□ 1.41
DNMT1-213ENST00000587604 P3H3Q8IVL6 736 aa23.82■■□□□ 1.4
DNMT1-213ENST00000587604 ATP10BO94823 1461 aa23.79■■□□□ 1.4
DNMT1-213ENST00000587604 ARID3CA6NKF2 412 aa23.77■■□□□ 1.4
DNMT1-213ENST00000587604 SAMD9Q5K651 1589 aa23.74■■□□□ 1.39
DNMT1-213ENST00000587604 ARAP3Q8WWN8 1544 aa23.72■■□□□ 1.39
DNMT1-213ENST00000587604 PHLDB1Q86UU1 1377 aa23.68■■□□□ 1.38
DNMT1-213ENST00000587604 ABCA9Q8IUA7 1624 aa23.68■■□□□ 1.38
DNMT1-213ENST00000587604 RAPGEF6Q8TEU7 1601 aa23.68■■□□□ 1.38
DNMT1-213ENST00000587604 EEA1Q15075 1411 aa23.67■■□□□ 1.38
DNMT1-213ENST00000587604 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.64■■□□□ 1.37
DNMT1-213ENST00000587604 HNRNPUL2Q1KMD3 747 aaKnown RBP23.64■■□□□ 1.37
DNMT1-213ENST00000587604 HECW2Q9P2P5 1572 aa23.64■■□□□ 1.37
DNMT1-213ENST00000587604 KIF21BO75037 1637 aa23.62■■□□□ 1.37
DNMT1-213ENST00000587604 RANGAP1P46060 587 aaPredicted RBP23.6■■□□□ 1.37
DNMT1-213ENST00000587604 ILDR1Q86SU0 546 aaPredicted RBP23.59■■□□□ 1.37
DNMT1-213ENST00000587604 NUP153P49790 1475 aaKnown RBP23.59■■□□□ 1.37
DNMT1-213ENST00000587604 NEO1Q92859 1461 aa23.58■■□□□ 1.37
DNMT1-213ENST00000587604 RAPGEF3O95398 923 aa23.58■■□□□ 1.37
DNMT1-213ENST00000587604 FHOD3Q2V2M9 1422 aa23.57■■□□□ 1.36
DNMT1-213ENST00000587604 PLEKHD1A6NEE1 506 aa23.54■■□□□ 1.36
DNMT1-213ENST00000587604 EFCAB5A4FU69 1503 aa23.48■■□□□ 1.35
DNMT1-213ENST00000587604 ADAMTSL3P82987 1691 aa23.47■■□□□ 1.35
DNMT1-213ENST00000587604 FRMPD1Q5SYB0 1578 aa23.46■■□□□ 1.35
DNMT1-213ENST00000587604 PTPRMP28827 1452 aa23.43■■□□□ 1.34
DNMT1-213ENST00000587604 AKNAQ7Z591 1439 aa23.42■■□□□ 1.34
DNMT1-213ENST00000587604 DENND4BO75064 1496 aaPredicted RBP23.42■■□□□ 1.34
DNMT1-213ENST00000587604 ARID4BQ4LE39 1312 aaPredicted RBP23.41■■□□□ 1.34
DNMT1-213ENST00000587604 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.41■■□□□ 1.34
DNMT1-213ENST00000587604 BCORL1Q5H9F3 1711 aa23.4■■□□□ 1.34
DNMT1-213ENST00000587604 FANCAO15360 1455 aa23.4■■□□□ 1.34
DNMT1-213ENST00000587604 RICTORQ6R327 1708 aa23.39■■□□□ 1.33
DNMT1-213ENST00000587604 CFAP74Q9C0B2 1584 aa23.38■■□□□ 1.33
DNMT1-213ENST00000587604 TTC37Q6PGP7 1564 aa23.35■■□□□ 1.33
DNMT1-213ENST00000587604 ARHGEF40Q8TER5 1519 aa23.34■■□□□ 1.33
DNMT1-213ENST00000587604 UBTFP17480 764 aaKnown RBP23.34■■□□□ 1.33
DNMT1-213ENST00000587604 MADDQ8WXG6 1647 aa23.33■■□□□ 1.33
DNMT1-213ENST00000587604 CDK13Q14004 1512 aaKnown RBP23.33■■□□□ 1.32
DNMT1-213ENST00000587604 ZMYM4Q5VZL5 1548 aa23.29■■□□□ 1.32
DNMT1-213ENST00000587604 PLCH2O75038 1416 aa23.29■■□□□ 1.32
DNMT1-213ENST00000587604 FMN1Q68DA7 1419 aa23.29■■□□□ 1.32
DNMT1-213ENST00000587604 EHMT2Q96KQ7 1210 aa23.29■■□□□ 1.32
DNMT1-213ENST00000587604 ATP1B4Q9UN42 357 aaPredicted RBP23.28■■□□□ 1.32
DNMT1-213ENST00000587604 MAGI2Q86UL8 1455 aa23.28■■□□□ 1.32
DNMT1-213ENST00000587604 POGZQ7Z3K3 1410 aa23.26■■□□□ 1.31
DNMT1-213ENST00000587604 ARHGAP35Q9NRY4 1499 aa23.25■■□□□ 1.31
DNMT1-213ENST00000587604 ZFYVE16Q7Z3T8 1539 aa23.25■■□□□ 1.31
DNMT1-213ENST00000587604 CDK11AQ9UQ88 783 aaPredicted RBP23.25■■□□□ 1.31
DNMT1-213ENST00000587604 RIMS1Q86UR5 1692 aaKnown RBP23.25■■□□□ 1.31
DNMT1-213ENST00000587604 SCAPERQ9BY12 1400 aa23.25■■□□□ 1.31
DNMT1-213ENST00000587604 YEATS2Q9ULM3 1422 aa23.25■■□□□ 1.31
DNMT1-213ENST00000587604 HECW1Q76N89 1606 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms