RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 ADAMTS12P58397 1594 aa31■■■□□ 2.55
TRIM47-204ENST00000587339 CTTNBP2Q8WZ74 1663 aa30.98■■■□□ 2.55
TRIM47-204ENST00000587339 SNAPC4Q5SXM2 1469 aa30.91■■■□□ 2.54
TRIM47-204ENST00000587339 MAGI1Q96QZ7 1491 aaPredicted RBP30.84■■■□□ 2.53
TRIM47-204ENST00000587339 APLP2Q06481 763 aa30.84■■■□□ 2.53
TRIM47-204ENST00000587339 EFCAB5A4FU69 1503 aa30.81■■■□□ 2.52
TRIM47-204ENST00000587339 TTBK1Q5TCY1 1321 aaPredicted RBP30.76■■■□□ 2.52
TRIM47-204ENST00000587339 GRIN2AQ12879 1464 aa30.74■■■□□ 2.51
TRIM47-204ENST00000587339 P3H3Q8IVL6 736 aa30.74■■■□□ 2.51
TRIM47-204ENST00000587339 SYNJ2O15056 1496 aa30.73■■■□□ 2.51
TRIM47-204ENST00000587339 CHMP7Q8WUX9 453 aaPredicted RBP30.71■■■□□ 2.51
TRIM47-204ENST00000587339 FHOD3Q2V2M9 1422 aa30.69■■■□□ 2.5
TRIM47-204ENST00000587339 IQGAP2Q13576 1575 aa30.69■■■□□ 2.5
TRIM47-204ENST00000587339 SAMD9Q5K651 1589 aa30.67■■■□□ 2.5
TRIM47-204ENST00000587339 FBLN2P98095 1184 aa30.64■■■□□ 2.5
TRIM47-204ENST00000587339 KIAA0586Q9BVV6 1533 aa30.62■■■□□ 2.49
TRIM47-204ENST00000587339 FMN1Q68DA7 1419 aa30.57■■■□□ 2.48
TRIM47-204ENST00000587339 PCF11O94913 1555 aaKnown RBP30.54■■■□□ 2.48
TRIM47-204ENST00000587339 CEP170Q5SW79 1584 aa30.53■■■□□ 2.48
TRIM47-204ENST00000587339 UGGT2Q9NYU1 1516 aa30.53■■■□□ 2.48
TRIM47-204ENST00000587339 NUP160Q12769 1436 aa30.5■■■□□ 2.47
TRIM47-204ENST00000587339 KANK4Q5T7N3 995 aaPredicted RBP30.5■■■□□ 2.47
TRIM47-204ENST00000587339 FYCO1Q9BQS8 1478 aa30.5■■■□□ 2.47
TRIM47-204ENST00000587339 CASKIN1Q8WXD9 1431 aa30.5■■■□□ 2.47
TRIM47-204ENST00000587339 MAP3K1Q13233 1512 aa30.49■■■□□ 2.47
TRIM47-204ENST00000587339 TIAM1Q13009 1591 aa30.46■■■□□ 2.47
TRIM47-204ENST00000587339 ATP1B4Q9UN42 357 aaPredicted RBP30.45■■■□□ 2.47
TRIM47-204ENST00000587339 DISP1Q96F81 1524 aa30.38■■■□□ 2.45
TRIM47-204ENST00000587339 KIAA0556O60303 1618 aa30.36■■■□□ 2.45
TRIM47-204ENST00000587339 CFAP43Q8NDM7 1665 aa30.36■■■□□ 2.45
TRIM47-204ENST00000587339 CHD1O14646 1710 aa30.33■■■□□ 2.45
TRIM47-204ENST00000587339 LRRC9Q6ZRR7 1453 aa30.33■■■□□ 2.45
TRIM47-204ENST00000587339 JPH4Q96JJ6 628 aa30.32■■■□□ 2.44
TRIM47-204ENST00000587339 CARMIL2Q6F5E8 1435 aa30.26■■■□□ 2.43
TRIM47-204ENST00000587339 HRCP23327 699 aa30.23■■■□□ 2.43
TRIM47-204ENST00000587339 HECW1Q76N89 1606 aa30.21■■■□□ 2.43
TRIM47-204ENST00000587339 LRRIQ1Q96JM4 1722 aa30.2■■■□□ 2.43
TRIM47-204ENST00000587339 CCDC18Q5T9S5 1454 aa30.18■■■□□ 2.42
TRIM47-204ENST00000587339 RRBP1Q9P2E9 1410 aaKnown RBP30.15■■■□□ 2.42
TRIM47-204ENST00000587339 MTUS2Q5JR59 1369 aa30.13■■■□□ 2.41
TRIM47-204ENST00000587339 EPRSP07814 1512 aaKnown RBP30.11■■■□□ 2.41
TRIM47-204ENST00000587339 PRG4Q92954 1404 aaPredicted RBP30.1■■■□□ 2.41
TRIM47-204ENST00000587339 RAPGEF6Q8TEU7 1601 aa30.08■■■□□ 2.41
TRIM47-204ENST00000587339 HNRNPUL2Q1KMD3 747 aaKnown RBP30.08■■■□□ 2.41
TRIM47-204ENST00000587339 CCNB3Q8WWL7 1395 aa30.08■■■□□ 2.41
TRIM47-204ENST00000587339 PHLDB1Q86UU1 1377 aa30.07■■■□□ 2.4
TRIM47-204ENST00000587339 SHROOM2Q13796 1616 aa30.04■■■□□ 2.4
TRIM47-204ENST00000587339 EHBP1L1Q8N3D4 1523 aa30.04■■■□□ 2.4
TRIM47-204ENST00000587339 NUP153P49790 1475 aaKnown RBP30.03■■■□□ 2.4
TRIM47-204ENST00000587339 CDK13Q14004 1512 aaKnown RBP30.03■■■□□ 2.4
TRIM47-204ENST00000587339 PLB1Q6P1J6 1458 aa30.02■■■□□ 2.4
TRIM47-204ENST00000587339 ARID3CA6NKF2 412 aa30■■■□□ 2.39
TRIM47-204ENST00000587339 MAGI3Q5TCQ9 1506 aa29.99■■■□□ 2.39
TRIM47-204ENST00000587339 CLASP1Q7Z460 1538 aa29.99■■■□□ 2.39
TRIM47-204ENST00000587339 SUPT6HQ7KZ85 1726 aaKnown RBP29.96■■■□□ 2.39
TRIM47-204ENST00000587339 NCOA2Q15596 1464 aa29.94■■■□□ 2.38
TRIM47-204ENST00000587339 PTPRGP23470 1445 aa29.94■■■□□ 2.38
TRIM47-204ENST00000587339 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.93■■■□□ 2.38
TRIM47-204ENST00000587339 ABCA8O94911 1581 aa29.91■■■□□ 2.38
TRIM47-204ENST00000587339 CDK11AQ9UQ88 783 aaPredicted RBP29.89■■■□□ 2.38
TRIM47-204ENST00000587339 CCER1Q8TC90 406 aaPredicted RBP29.86■■■□□ 2.37
TRIM47-204ENST00000587339 ARHGEF11O15085 1522 aa29.86■■■□□ 2.37
TRIM47-204ENST00000587339 ZEB1P37275 1124 aaPredicted RBP29.86■■■□□ 2.37
TRIM47-204ENST00000587339 FAM50AQ14320 339 aaKnown RBP29.85■■■□□ 2.37
TRIM47-204ENST00000587339 FGD6Q6ZV73 1430 aa29.85■■■□□ 2.37
TRIM47-204ENST00000587339 ERCC6L2Q5T890 1561 aa29.84■■■□□ 2.37
TRIM47-204ENST00000587339 MYOM3Q5VTT5 1437 aa29.84■■■□□ 2.37
TRIM47-204ENST00000587339 ITGAEP38570 1179 aa29.82■■■□□ 2.36
TRIM47-204ENST00000587339 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.81■■■□□ 2.36
TRIM47-204ENST00000587339 UACAQ9BZF9 1416 aa29.76■■■□□ 2.35
TRIM47-204ENST00000587339 ATP10BO94823 1461 aa29.75■■■□□ 2.35
TRIM47-204ENST00000587339 TROQ12816 1431 aaPredicted RBP29.75■■■□□ 2.35
TRIM47-204ENST00000587339 OSCARQ8IYS5 282 aa29.73■■■□□ 2.35
TRIM47-204ENST00000587339 PLEKHD1A6NEE1 506 aa29.69■■■□□ 2.34
TRIM47-204ENST00000587339 PTPN23Q9H3S7 1636 aa29.66■■■□□ 2.34
TRIM47-204ENST00000587339 MIA2Q96PC5 1412 aa29.66■■■□□ 2.34
TRIM47-204ENST00000587339 ABCC2Q92887 1545 aa29.65■■■□□ 2.34
TRIM47-204ENST00000587339 ADCY10Q96PN6 1610 aa29.63■■■□□ 2.33
TRIM47-204ENST00000587339 TCOF1Q13428 1488 aaKnown RBP29.61■■■□□ 2.33
TRIM47-204ENST00000587339 KIF14Q15058 1648 aa29.59■■■□□ 2.33
TRIM47-204ENST00000587339 UHRF1BP1LA0JNW5 1464 aa29.55■■■□□ 2.32
TRIM47-204ENST00000587339 SETD5Q9C0A6 1442 aa29.54■■■□□ 2.32
TRIM47-204ENST00000587339 RAB3GAP2Q9H2M9 1393 aa29.52■■■□□ 2.32
TRIM47-204ENST00000587339 ITSN2Q9NZM3 1697 aa29.5■■■□□ 2.31
TRIM47-204ENST00000587339 PTPRKQ15262 1439 aa29.5■■■□□ 2.31
TRIM47-204ENST00000587339 GPATCH8Q9UKJ3 1502 aaKnown RBP29.5■■■□□ 2.31
TRIM47-204ENST00000587339 CFDP1Q9UEE9 299 aaPredicted RBP29.47■■■□□ 2.31
TRIM47-204ENST00000587339 ABCC10Q5T3U5 1492 aa29.46■■■□□ 2.31
TRIM47-204ENST00000587339 KDM5BQ9UGL1 1544 aa29.46■■■□□ 2.31
TRIM47-204ENST00000587339 DHX57Q6P158 1386 aaKnown RBP29.45■■■□□ 2.3
TRIM47-204ENST00000587339 ZCCHC11Q5TAX3 1644 aaKnown RBP29.43■■■□□ 2.3
TRIM47-204ENST00000587339 ZNF644Q9H582 1327 aaPredicted RBP29.42■■■□□ 2.3
TRIM47-204ENST00000587339 HFM1A2PYH4 1435 aa29.4■■■□□ 2.3
TRIM47-204ENST00000587339 CDC42BPAQ5VT25 1732 aa29.38■■■□□ 2.29
TRIM47-204ENST00000587339 CAMSAP2Q08AD1 1489 aa29.38■■■□□ 2.29
TRIM47-204ENST00000587339 CLSPNQ9HAW4 1339 aa29.37■■■□□ 2.29
TRIM47-204ENST00000587339 ZNF777Q9ULD5 760 aaPredicted RBP29.35■■■□□ 2.29
TRIM47-204ENST00000587339 DAPK1P53355 1430 aa29.35■■■□□ 2.29
TRIM47-204ENST00000587339 DNMT1P26358 1616 aaKnown RBP29.35■■■□□ 2.29
TRIM47-204ENST00000587339 CHIC2Q9UKJ5 165 aa29.34■■■□□ 2.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms