RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 RUSC2Q8N2Y8 1516 aa38.84■■■■□ 3.81
SHMT1-210ENST00000583780 FAM69CQ0P6D2 419 aa38.78■■■■□ 3.8
SHMT1-210ENST00000583780 ABCC10Q5T3U5 1492 aa38.76■■■■□ 3.8
SHMT1-210ENST00000583780 NPM1P06748 294 aaKnown RBP eCLIP38.74■■■■□ 3.79
SHMT1-210ENST00000583780 IGF1RP08069 1367 aa38.71■■■■□ 3.79
SHMT1-210ENST00000583780 MAPKBP1O60336 1514 aa38.68■■■■□ 3.78
SHMT1-210ENST00000583780 ADCY10Q96PN6 1610 aa38.67■■■■□ 3.78
SHMT1-210ENST00000583780 KIAA0586Q9BVV6 1533 aa38.66■■■■□ 3.78
SHMT1-210ENST00000583780 DIP2BQ9P265 1576 aa38.61■■■■□ 3.77
SHMT1-210ENST00000583780 KIF27Q86VH2 1401 aa38.55■■■■□ 3.76
SHMT1-210ENST00000583780 CUL7Q14999 1698 aa38.5■■■■□ 3.75
SHMT1-210ENST00000583780 TSPOAP1O95153 1857 aa38.42■■■■□ 3.74
SHMT1-210ENST00000583780 PTPRGP23470 1445 aa38.4■■■■□ 3.74
SHMT1-210ENST00000583780 CARMIL1Q5VZK9 1371 aa38.39■■■■□ 3.74
SHMT1-210ENST00000583780 KDM6BO15054 1643 aa38.38■■■■□ 3.73
SHMT1-210ENST00000583780 KDM4FA0A1W2PPD8 638 aa38.36■■■■□ 3.73
SHMT1-210ENST00000583780 TTBK1Q5TCY1 1321 aaPredicted RBP38.3■■■■□ 3.72
SHMT1-210ENST00000583780 TNIKQ9UKE5 1360 aa38.28■■■■□ 3.72
SHMT1-210ENST00000583780 ABCC2Q92887 1545 aa38.23■■■■□ 3.71
SHMT1-210ENST00000583780 CARMIL2Q6F5E8 1435 aa38.23■■■■□ 3.71
SHMT1-210ENST00000583780 IQGAP2Q13576 1575 aa38.16■■■■□ 3.7
SHMT1-210ENST00000583780 ASXL2Q76L83 1435 aa38.16■■■■□ 3.7
SHMT1-210ENST00000583780 UHRF1BP1LA0JNW5 1464 aa38.13■■■■□ 3.69
SHMT1-210ENST00000583780 PPRC1Q5VV67 1664 aaKnown RBP38.12■■■■□ 3.69
SHMT1-210ENST00000583780 GLI2P10070 1586 aa38.12■■■■□ 3.69
SHMT1-210ENST00000583780 PLB1Q6P1J6 1458 aa38.12■■■■□ 3.69
SHMT1-210ENST00000583780 DISP1Q96F81 1524 aa38.1■■■■□ 3.69
SHMT1-210ENST00000583780 UACAQ9BZF9 1416 aa38.09■■■■□ 3.69
SHMT1-210ENST00000583780 KDM5BQ9UGL1 1544 aa37.97■■■■□ 3.67
SHMT1-210ENST00000583780 COL17A1Q9UMD9 1497 aaPredicted RBP37.96■■■■□ 3.67
SHMT1-210ENST00000583780 UGGT2Q9NYU1 1516 aa37.96■■■■□ 3.67
SHMT1-210ENST00000583780 RAPGEF2Q9Y4G8 1499 aa37.94■■■■□ 3.66
SHMT1-210ENST00000583780 EPRSP07814 1512 aaKnown RBP37.93■■■■□ 3.66
SHMT1-210ENST00000583780 MAP3K4Q9Y6R4 1608 aa37.89■■■■□ 3.66
SHMT1-210ENST00000583780 ZCCHC11Q5TAX3 1644 aaKnown RBP37.86■■■■□ 3.65
SHMT1-210ENST00000583780 KIAA0556O60303 1618 aa37.83■■■■□ 3.65
SHMT1-210ENST00000583780 ADGRL1O94910 1474 aa37.81■■■■□ 3.64
SHMT1-210ENST00000583780 TEX14Q8IWB6 1497 aa37.74■■■■□ 3.63
SHMT1-210ENST00000583780 WDR7Q9Y4E6 1490 aa37.67■■■■□ 3.62
SHMT1-210ENST00000583780 ILDR1Q86SU0 546 aaPredicted RBP37.63■■■■□ 3.61
SHMT1-210ENST00000583780 CTTNBP2Q8WZ74 1663 aa37.63■■■■□ 3.61
SHMT1-210ENST00000583780 ABCA8O94911 1581 aa37.58■■■■□ 3.61
SHMT1-210ENST00000583780 KCNH8Q96L42 1107 aa37.56■■■■□ 3.6
SHMT1-210ENST00000583780 CD109Q6YHK3 1445 aa37.54■■■■□ 3.6
SHMT1-210ENST00000583780 GOLGA3Q08378 1498 aa37.54■■■■□ 3.6
SHMT1-210ENST00000583780 MAGI3Q5TCQ9 1506 aa37.53■■■■□ 3.6
SHMT1-210ENST00000583780 CFAP43Q8NDM7 1665 aa37.5■■■■□ 3.59
SHMT1-210ENST00000583780 PRXQ9BXM0 1461 aa37.47■■■■□ 3.59
SHMT1-210ENST00000583780 HECW2Q9P2P5 1572 aa37.43■■■■□ 3.58
SHMT1-210ENST00000583780 ATP10BO94823 1461 aa37.31■■■■□ 3.56
SHMT1-210ENST00000583780 P3H3Q8IVL6 736 aa37.3■■■■□ 3.56
SHMT1-210ENST00000583780 ARID3CA6NKF2 412 aa37.28■■■■□ 3.56
SHMT1-210ENST00000583780 ARAP3Q8WWN8 1544 aa37.27■■■■□ 3.56
SHMT1-210ENST00000583780 KIF21BO75037 1637 aa37.23■■■■□ 3.55
SHMT1-210ENST00000583780 FAM9AQ8IZU1 332 aaPredicted RBP37.17■■■■□ 3.54
SHMT1-210ENST00000583780 ABCA9Q8IUA7 1624 aa37.15■■■■□ 3.54
SHMT1-210ENST00000583780 PHLDB1Q86UU1 1377 aa37.12■■■■□ 3.53
SHMT1-210ENST00000583780 CSRNP3Q8WYN3 585 aa37.1■■■■□ 3.53
SHMT1-210ENST00000583780 SAMD9Q5K651 1589 aa37.09■■■■□ 3.53
SHMT1-210ENST00000583780 RAPGEF3O95398 923 aa37.08■■■■□ 3.53
SHMT1-210ENST00000583780 RAPGEF6Q8TEU7 1601 aa37.03■■■■□ 3.52
SHMT1-210ENST00000583780 ADAMTSL3P82987 1691 aa37.02■■■■□ 3.52
SHMT1-210ENST00000583780 NEO1Q92859 1461 aa36.99■■■■□ 3.51
SHMT1-210ENST00000583780 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.97■■■■□ 3.51
SHMT1-210ENST00000583780 HNRNPUL2Q1KMD3 747 aaKnown RBP36.97■■■■□ 3.51
SHMT1-210ENST00000583780 PTPRMP28827 1452 aa36.96■■■■□ 3.51
SHMT1-210ENST00000583780 NUP153P49790 1475 aaKnown RBP36.94■■■■□ 3.5
SHMT1-210ENST00000583780 FRMPD1Q5SYB0 1578 aa36.91■■■■□ 3.5
SHMT1-210ENST00000583780 BCORL1Q5H9F3 1711 aa36.86■■■■□ 3.49
SHMT1-210ENST00000583780 RANGAP1P46060 587 aaPredicted RBP36.85■■■■□ 3.49
SHMT1-210ENST00000583780 FHOD3Q2V2M9 1422 aa36.83■■■■□ 3.49
SHMT1-210ENST00000583780 PLEKHD1A6NEE1 506 aa36.81■■■■□ 3.48
SHMT1-210ENST00000583780 ARID4BQ4LE39 1312 aaPredicted RBP36.8■■■■□ 3.48
SHMT1-210ENST00000583780 FBXO41Q8TF61 875 aa36.78■■■■□ 3.48
SHMT1-210ENST00000583780 MADDQ8WXG6 1647 aa36.77■■■■□ 3.48
SHMT1-210ENST00000583780 AKNAQ7Z591 1439 aa36.74■■■■□ 3.47
SHMT1-210ENST00000583780 RICTORQ6R327 1708 aa36.73■■■■□ 3.47
SHMT1-210ENST00000583780 DENND4BO75064 1496 aaPredicted RBP36.73■■■■□ 3.47
SHMT1-210ENST00000583780 EEA1Q15075 1411 aa36.72■■■■□ 3.47
SHMT1-210ENST00000583780 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.69■■■■□ 3.46
SHMT1-210ENST00000583780 FANCAO15360 1455 aa36.67■■■■□ 3.46
SHMT1-210ENST00000583780 ARHGEF40Q8TER5 1519 aa36.66■■■■□ 3.46
SHMT1-210ENST00000583780 LMTK3Q96Q04 1460 aa36.66■■■■□ 3.46
SHMT1-210ENST00000583780 PCF11O94913 1555 aaKnown RBP36.66■■■■□ 3.46
SHMT1-210ENST00000583780 RIMS1Q86UR5 1692 aaKnown RBP36.62■■■■□ 3.45
SHMT1-210ENST00000583780 TTC37Q6PGP7 1564 aa36.6■■■■□ 3.45
SHMT1-210ENST00000583780 CFAP74Q9C0B2 1584 aa36.58■■■■□ 3.45
SHMT1-210ENST00000583780 SIGLEC1Q9BZZ2 1709 aa36.58■■■■□ 3.45
SHMT1-210ENST00000583780 EFCAB5A4FU69 1503 aa36.56■■■■□ 3.44
SHMT1-210ENST00000583780 YEATS2Q9ULM3 1422 aa36.56■■■■□ 3.44
SHMT1-210ENST00000583780 ZMYM4Q5VZL5 1548 aa36.55■■■■□ 3.44
SHMT1-210ENST00000583780 CDK13Q14004 1512 aaKnown RBP36.51■■■■□ 3.44
SHMT1-210ENST00000583780 HSPA2P54652 639 aa36.5■■■■□ 3.43
SHMT1-210ENST00000583780 ZFYVE16Q7Z3T8 1539 aa36.49■■■■□ 3.43
SHMT1-210ENST00000583780 PLCH2O75038 1416 aa36.48■■■■□ 3.43
SHMT1-210ENST00000583780 POGZQ7Z3K3 1410 aa36.48■■■■□ 3.43
SHMT1-210ENST00000583780 MAGI2Q86UL8 1455 aa36.48■■■■□ 3.43
SHMT1-210ENST00000583780 HECW1Q76N89 1606 aa36.48■■■■□ 3.43
SHMT1-210ENST00000583780 PLPPR3Q6T4P5 718 aa36.46■■■■□ 3.43
SHMT1-210ENST00000583780 SCAPERQ9BY12 1400 aa36.45■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms