RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 RUSC2Q8N2Y8 1516 aa17.05■□□□□ 0.32
SMARCD2-208ENST00000580054 FAM69CQ0P6D2 419 aa17.04■□□□□ 0.32
SMARCD2-208ENST00000580054 MAPKBP1O60336 1514 aa17.04■□□□□ 0.32
SMARCD2-208ENST00000580054 KDM6BO15054 1643 aa17.03■□□□□ 0.32
SMARCD2-208ENST00000580054 ADCY10Q96PN6 1610 aa17.03■□□□□ 0.32
SMARCD2-208ENST00000580054 TSPOAP1O95153 1857 aa17.03■□□□□ 0.32
SMARCD2-208ENST00000580054 KDM4FA0A1W2PPD8 638 aa17.02■□□□□ 0.32
SMARCD2-208ENST00000580054 JPH4Q96JJ6 628 aa16.98■□□□□ 0.31
SMARCD2-208ENST00000580054 ILDR1Q86SU0 546 aaPredicted RBP16.97■□□□□ 0.31
SMARCD2-208ENST00000580054 NPM1P06748 294 aaKnown RBP eCLIP16.91■□□□□ 0.3
SMARCD2-208ENST00000580054 PPRC1Q5VV67 1664 aaKnown RBP16.86■□□□□ 0.29
SMARCD2-208ENST00000580054 ADGRL1O94910 1474 aa16.82■□□□□ 0.28
SMARCD2-208ENST00000580054 SUPT5HO00267 1087 aaKnown RBP16.81■□□□□ 0.28
SMARCD2-208ENST00000580054 KIAA0586Q9BVV6 1533 aa16.8■□□□□ 0.28
SMARCD2-208ENST00000580054 HECW2Q9P2P5 1572 aa16.77■□□□□ 0.27
SMARCD2-208ENST00000580054 CUL7Q14999 1698 aa16.76■□□□□ 0.27
SMARCD2-208ENST00000580054 GLI2P10070 1586 aa16.74■□□□□ 0.27
SMARCD2-208ENST00000580054 ABCC2Q92887 1545 aa16.74■□□□□ 0.27
SMARCD2-208ENST00000580054 TTBK1Q5TCY1 1321 aaPredicted RBP16.73■□□□□ 0.27
SMARCD2-208ENST00000580054 PTPRGP23470 1445 aa16.73■□□□□ 0.27
SMARCD2-208ENST00000580054 ASXL2Q76L83 1435 aa16.73■□□□□ 0.27
SMARCD2-208ENST00000580054 COL17A1Q9UMD9 1497 aaPredicted RBP16.72■□□□□ 0.27
SMARCD2-208ENST00000580054 IGF1RP08069 1367 aa16.7■□□□□ 0.26
SMARCD2-208ENST00000580054 MAP3K4Q9Y6R4 1608 aa16.69■□□□□ 0.26
SMARCD2-208ENST00000580054 PLB1Q6P1J6 1458 aa16.68■□□□□ 0.26
SMARCD2-208ENST00000580054 TNIKQ9UKE5 1360 aa16.66■□□□□ 0.26
SMARCD2-208ENST00000580054 KIF27Q86VH2 1401 aa16.64■□□□□ 0.25
SMARCD2-208ENST00000580054 UHRF1BP1LA0JNW5 1464 aa16.64■□□□□ 0.25
SMARCD2-208ENST00000580054 EPRSP07814 1512 aaKnown RBP16.64■□□□□ 0.25
SMARCD2-208ENST00000580054 IQGAP2Q13576 1575 aa16.63■□□□□ 0.25
SMARCD2-208ENST00000580054 CARMIL2Q6F5E8 1435 aa16.62■□□□□ 0.25
SMARCD2-208ENST00000580054 ZCCHC11Q5TAX3 1644 aaKnown RBP16.61■□□□□ 0.25
SMARCD2-208ENST00000580054 UACAQ9BZF9 1416 aa16.6■□□□□ 0.25
SMARCD2-208ENST00000580054 TEX14Q8IWB6 1497 aa16.59■□□□□ 0.25
SMARCD2-208ENST00000580054 DISP1Q96F81 1524 aa16.59■□□□□ 0.25
SMARCD2-208ENST00000580054 KDM5BQ9UGL1 1544 aa16.58■□□□□ 0.24
SMARCD2-208ENST00000580054 CARMIL1Q5VZK9 1371 aa16.57■□□□□ 0.24
SMARCD2-208ENST00000580054 KIAA0556O60303 1618 aa16.52■□□□□ 0.23
SMARCD2-208ENST00000580054 KIF21BO75037 1637 aa16.52■□□□□ 0.23
SMARCD2-208ENST00000580054 UGGT2Q9NYU1 1516 aa16.5■□□□□ 0.23
SMARCD2-208ENST00000580054 WDR7Q9Y4E6 1490 aa16.49■□□□□ 0.23
SMARCD2-208ENST00000580054 CFAP43Q8NDM7 1665 aa16.46■□□□□ 0.23
SMARCD2-208ENST00000580054 MAGI3Q5TCQ9 1506 aa16.44■□□□□ 0.22
SMARCD2-208ENST00000580054 FBXO41Q8TF61 875 aa16.43■□□□□ 0.22
SMARCD2-208ENST00000580054 CD109Q6YHK3 1445 aa16.41■□□□□ 0.22
SMARCD2-208ENST00000580054 RAPGEF2Q9Y4G8 1499 aa16.39■□□□□ 0.21
SMARCD2-208ENST00000580054 CTTNBP2Q8WZ74 1663 aa16.38■□□□□ 0.21
SMARCD2-208ENST00000580054 ABCA8O94911 1581 aa16.38■□□□□ 0.21
SMARCD2-208ENST00000580054 ADAMTSL3P82987 1691 aa16.37■□□□□ 0.21
SMARCD2-208ENST00000580054 KCNH8Q96L42 1107 aa16.35■□□□□ 0.21
SMARCD2-208ENST00000580054 PTPRMP28827 1452 aa16.34■□□□□ 0.21
SMARCD2-208ENST00000580054 ARAP3Q8WWN8 1544 aa16.31■□□□□ 0.2
SMARCD2-208ENST00000580054 MADDQ8WXG6 1647 aa16.3■□□□□ 0.2
SMARCD2-208ENST00000580054 PCF11O94913 1555 aaKnown RBP16.29■□□□□ 0.2
SMARCD2-208ENST00000580054 BCORL1Q5H9F3 1711 aa16.28■□□□□ 0.2
SMARCD2-208ENST00000580054 GOLGA3Q08378 1498 aa16.27■□□□□ 0.19
SMARCD2-208ENST00000580054 LMTK3Q96Q04 1460 aa16.27■□□□□ 0.19
SMARCD2-208ENST00000580054 FRMPD1Q5SYB0 1578 aa16.26■□□□□ 0.19
SMARCD2-208ENST00000580054 ARID3CA6NKF2 412 aa16.25■□□□□ 0.19
SMARCD2-208ENST00000580054 ABCA9Q8IUA7 1624 aa16.25■□□□□ 0.19
SMARCD2-208ENST00000580054 RIMS1Q86UR5 1692 aaKnown RBP16.23■□□□□ 0.19
SMARCD2-208ENST00000580054 RAPGEF3O95398 923 aa16.2■□□□□ 0.18
SMARCD2-208ENST00000580054 ATP10BO94823 1461 aa16.2■□□□□ 0.18
SMARCD2-208ENST00000580054 ARHGEF40Q8TER5 1519 aa16.18■□□□□ 0.18
SMARCD2-208ENST00000580054 NEO1Q92859 1461 aa16.16■□□□□ 0.18
SMARCD2-208ENST00000580054 ARID4BQ4LE39 1312 aaPredicted RBP16.15■□□□□ 0.18
SMARCD2-208ENST00000580054 PHLDB1Q86UU1 1377 aa16.14■□□□□ 0.17
SMARCD2-208ENST00000580054 SIGLEC1Q9BZZ2 1709 aa16.14■□□□□ 0.17
SMARCD2-208ENST00000580054 HSPA2P54652 639 aa16.14■□□□□ 0.17
SMARCD2-208ENST00000580054 RICTORQ6R327 1708 aa16.14■□□□□ 0.17
SMARCD2-208ENST00000580054 P3H3Q8IVL6 736 aa16.12■□□□□ 0.17
SMARCD2-208ENST00000580054 RAPGEF6Q8TEU7 1601 aa16.12■□□□□ 0.17
SMARCD2-208ENST00000580054 PRXQ9BXM0 1461 aa16.11■□□□□ 0.17
SMARCD2-208ENST00000580054 PLPPR3Q6T4P5 718 aa16.09■□□□□ 0.17
SMARCD2-208ENST00000580054 SAMD9Q5K651 1589 aa16.09■□□□□ 0.17
SMARCD2-208ENST00000580054 FER1L4A9Z1Z3 1794 aa16.07■□□□□ 0.16
SMARCD2-208ENST00000580054 DENND4BO75064 1496 aaPredicted RBP16.05■□□□□ 0.16
SMARCD2-208ENST00000580054 CERKQ8TCT0 537 aa16.05■□□□□ 0.16
SMARCD2-208ENST00000580054 NUP153P49790 1475 aaKnown RBP16.04■□□□□ 0.16
SMARCD2-208ENST00000580054 ILDR2Q71H61 639 aa16.04■□□□□ 0.16
SMARCD2-208ENST00000580054 ZMYM4Q5VZL5 1548 aa16.04■□□□□ 0.16
SMARCD2-208ENST00000580054 ZFYVE16Q7Z3T8 1539 aa16.03■□□□□ 0.16
SMARCD2-208ENST00000580054 FANCAO15360 1455 aa16.03■□□□□ 0.16
SMARCD2-208ENST00000580054 YEATS2Q9ULM3 1422 aa16.02■□□□□ 0.16
SMARCD2-208ENST00000580054 TTC37Q6PGP7 1564 aa16.02■□□□□ 0.16
SMARCD2-208ENST00000580054 CFAP74Q9C0B2 1584 aa16.02■□□□□ 0.16
SMARCD2-208ENST00000580054 FHOD3Q2V2M9 1422 aa16.02■□□□□ 0.15
SMARCD2-208ENST00000580054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.01■□□□□ 0.15
SMARCD2-208ENST00000580054 HNRNPUL2Q1KMD3 747 aaKnown RBP16.01■□□□□ 0.15
SMARCD2-208ENST00000580054 AKNAQ7Z591 1439 aa16.01■□□□□ 0.15
SMARCD2-208ENST00000580054 DISP3Q9P2K9 1392 aa16■□□□□ 0.15
SMARCD2-208ENST00000580054 EFCAB5A4FU69 1503 aa15.99■□□□□ 0.15
SMARCD2-208ENST00000580054 POGZQ7Z3K3 1410 aa15.99■□□□□ 0.15
SMARCD2-208ENST00000580054 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.99■□□□□ 0.15
SMARCD2-208ENST00000580054 PREX1Q8TCU6 1659 aa15.99■□□□□ 0.15
SMARCD2-208ENST00000580054 HECW1Q76N89 1606 aa15.98■□□□□ 0.15
SMARCD2-208ENST00000580054 FAM9AQ8IZU1 332 aaPredicted RBP15.97■□□□□ 0.15
SMARCD2-208ENST00000580054 STRCQ7RTU9 1775 aa15.96■□□□□ 0.15
SMARCD2-208ENST00000580054 MLECQ14165 292 aa15.96■□□□□ 0.15
SMARCD2-208ENST00000580054 SOCS7O14512 581 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms