RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PRG4Q92954 1404 aaPredicted RBP17.48■□□□□ 0.39
SS18-210ENST00000578700 NPM1P06748 294 aaKnown RBP eCLIP17.48■□□□□ 0.39
SS18-210ENST00000578700 FAM69CQ0P6D2 419 aa17.47■□□□□ 0.39
SS18-210ENST00000578700 RUSC2Q8N2Y8 1516 aa17.4■□□□□ 0.38
SS18-210ENST00000578700 ABCC10Q5T3U5 1492 aa17.37■□□□□ 0.37
SS18-210ENST00000578700 MAPKBP1O60336 1514 aa17.37■□□□□ 0.37
SS18-210ENST00000578700 TTBK1Q5TCY1 1321 aaPredicted RBP17.36■□□□□ 0.37
SS18-210ENST00000578700 DIP2BQ9P265 1576 aa17.34■□□□□ 0.37
SS18-210ENST00000578700 ADCY10Q96PN6 1610 aa17.32■□□□□ 0.36
SS18-210ENST00000578700 TSPOAP1O95153 1857 aa17.27■□□□□ 0.36
SS18-210ENST00000578700 KIAA0586Q9BVV6 1533 aa17.26■□□□□ 0.35
SS18-210ENST00000578700 KDM6BO15054 1643 aa17.26■□□□□ 0.35
SS18-210ENST00000578700 KDM4FA0A1W2PPD8 638 aa17.26■□□□□ 0.35
SS18-210ENST00000578700 CUL7Q14999 1698 aa17.26■□□□□ 0.35
SS18-210ENST00000578700 IGF1RP08069 1367 aa17.23■□□□□ 0.35
SS18-210ENST00000578700 PTPRGP23470 1445 aa17.2■□□□□ 0.34
SS18-210ENST00000578700 KIF27Q86VH2 1401 aa17.18■□□□□ 0.34
SS18-210ENST00000578700 CARMIL1Q5VZK9 1371 aa17.14■□□□□ 0.33
SS18-210ENST00000578700 TNIKQ9UKE5 1360 aa17.12■□□□□ 0.33
SS18-210ENST00000578700 ABCC2Q92887 1545 aa17.11■□□□□ 0.33
SS18-210ENST00000578700 CARMIL2Q6F5E8 1435 aa17.11■□□□□ 0.33
SS18-210ENST00000578700 PPRC1Q5VV67 1664 aaKnown RBP17.1■□□□□ 0.33
SS18-210ENST00000578700 GLI2P10070 1586 aa17.1■□□□□ 0.33
SS18-210ENST00000578700 IQGAP2Q13576 1575 aa17.08■□□□□ 0.32
SS18-210ENST00000578700 PLB1Q6P1J6 1458 aa17.08■□□□□ 0.32
SS18-210ENST00000578700 ASXL2Q76L83 1435 aa17.07■□□□□ 0.32
SS18-210ENST00000578700 ILDR1Q86SU0 546 aaPredicted RBP17.07■□□□□ 0.32
SS18-210ENST00000578700 UHRF1BP1LA0JNW5 1464 aa17.05■□□□□ 0.32
SS18-210ENST00000578700 UACAQ9BZF9 1416 aa17.01■□□□□ 0.31
SS18-210ENST00000578700 MAP3K4Q9Y6R4 1608 aa17■□□□□ 0.31
SS18-210ENST00000578700 DISP1Q96F81 1524 aa17■□□□□ 0.31
SS18-210ENST00000578700 KDM5BQ9UGL1 1544 aa16.98■□□□□ 0.31
SS18-210ENST00000578700 ADGRL1O94910 1474 aa16.98■□□□□ 0.31
SS18-210ENST00000578700 EPRSP07814 1512 aaKnown RBP16.97■□□□□ 0.31
SS18-210ENST00000578700 ZCCHC11Q5TAX3 1644 aaKnown RBP16.96■□□□□ 0.31
SS18-210ENST00000578700 COL17A1Q9UMD9 1497 aaPredicted RBP16.96■□□□□ 0.31
SS18-210ENST00000578700 UGGT2Q9NYU1 1516 aa16.96■□□□□ 0.3
SS18-210ENST00000578700 TEX14Q8IWB6 1497 aa16.95■□□□□ 0.3
SS18-210ENST00000578700 KCNH8Q96L42 1107 aa16.93■□□□□ 0.3
SS18-210ENST00000578700 KIAA0556O60303 1618 aa16.92■□□□□ 0.3
SS18-210ENST00000578700 RAPGEF2Q9Y4G8 1499 aa16.91■□□□□ 0.3
SS18-210ENST00000578700 CTTNBP2Q8WZ74 1663 aa16.87■□□□□ 0.29
SS18-210ENST00000578700 WDR7Q9Y4E6 1490 aa16.86■□□□□ 0.29
SS18-210ENST00000578700 HECW2Q9P2P5 1572 aa16.85■□□□□ 0.29
SS18-210ENST00000578700 CFAP43Q8NDM7 1665 aa16.85■□□□□ 0.29
SS18-210ENST00000578700 ARID3CA6NKF2 412 aa16.83■□□□□ 0.28
SS18-210ENST00000578700 CD109Q6YHK3 1445 aa16.82■□□□□ 0.28
SS18-210ENST00000578700 MAGI3Q5TCQ9 1506 aa16.8■□□□□ 0.28
SS18-210ENST00000578700 P3H3Q8IVL6 736 aa16.79■□□□□ 0.28
SS18-210ENST00000578700 GOLGA3Q08378 1498 aa16.79■□□□□ 0.28
SS18-210ENST00000578700 ABCA8O94911 1581 aa16.78■□□□□ 0.28
SS18-210ENST00000578700 FAM9AQ8IZU1 332 aaPredicted RBP16.77■□□□□ 0.28
SS18-210ENST00000578700 KIF21BO75037 1637 aa16.72■□□□□ 0.27
SS18-210ENST00000578700 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.7■□□□□ 0.26
SS18-210ENST00000578700 HNRNPUL2Q1KMD3 747 aaKnown RBP16.7■□□□□ 0.26
SS18-210ENST00000578700 ARAP3Q8WWN8 1544 aa16.69■□□□□ 0.26
SS18-210ENST00000578700 RAPGEF3O95398 923 aa16.66■□□□□ 0.26
SS18-210ENST00000578700 RANGAP1P46060 587 aaPredicted RBP16.66■□□□□ 0.26
SS18-210ENST00000578700 PRXQ9BXM0 1461 aa16.66■□□□□ 0.26
SS18-210ENST00000578700 ARID4BQ4LE39 1312 aaPredicted RBP16.66■□□□□ 0.26
SS18-210ENST00000578700 ABCA9Q8IUA7 1624 aa16.64■□□□□ 0.25
SS18-210ENST00000578700 SENP3Q9H4L4 574 aaPredicted RBP16.63■□□□□ 0.25
SS18-210ENST00000578700 PHLDB1Q86UU1 1377 aa16.63■□□□□ 0.25
SS18-210ENST00000578700 ATP10BO94823 1461 aa16.62■□□□□ 0.25
SS18-210ENST00000578700 FBXO41Q8TF61 875 aa16.62■□□□□ 0.25
SS18-210ENST00000578700 ADAMTSL3P82987 1691 aa16.62■□□□□ 0.25
SS18-210ENST00000578700 PLPPR3Q6T4P5 718 aa16.61■□□□□ 0.25
SS18-210ENST00000578700 SAMD9Q5K651 1589 aa16.57■□□□□ 0.24
SS18-210ENST00000578700 PTPRMP28827 1452 aa16.57■□□□□ 0.24
SS18-210ENST00000578700 NEO1Q92859 1461 aa16.57■□□□□ 0.24
SS18-210ENST00000578700 BCORL1Q5H9F3 1711 aa16.56■□□□□ 0.24
SS18-210ENST00000578700 RAPGEF6Q8TEU7 1601 aa16.56■□□□□ 0.24
SS18-210ENST00000578700 CSRNP3Q8WYN3 585 aa16.55■□□□□ 0.24
SS18-210ENST00000578700 FRMPD1Q5SYB0 1578 aa16.53■□□□□ 0.24
SS18-210ENST00000578700 MADDQ8WXG6 1647 aa16.52■□□□□ 0.23
SS18-210ENST00000578700 PLEKHD1A6NEE1 506 aa16.51■□□□□ 0.23
SS18-210ENST00000578700 PCF11O94913 1555 aaKnown RBP16.49■□□□□ 0.23
SS18-210ENST00000578700 RICTORQ6R327 1708 aa16.48■□□□□ 0.23
SS18-210ENST00000578700 HSPA2P54652 639 aa16.48■□□□□ 0.23
SS18-210ENST00000578700 ARHGEF40Q8TER5 1519 aa16.47■□□□□ 0.23
SS18-210ENST00000578700 MLECQ14165 292 aa16.47■□□□□ 0.23
SS18-210ENST00000578700 NUP153P49790 1475 aaKnown RBP16.47■□□□□ 0.23
SS18-210ENST00000578700 RIMS1Q86UR5 1692 aaKnown RBP16.46■□□□□ 0.23
SS18-210ENST00000578700 LMTK3Q96Q04 1460 aa16.45■□□□□ 0.22
SS18-210ENST00000578700 CFAP74Q9C0B2 1584 aa16.45■□□□□ 0.22
SS18-210ENST00000578700 FHOD3Q2V2M9 1422 aa16.45■□□□□ 0.22
SS18-210ENST00000578700 DENND4BO75064 1496 aaPredicted RBP16.43■□□□□ 0.22
SS18-210ENST00000578700 PHF23Q9BUL5 403 aaPredicted RBP16.43■□□□□ 0.22
SS18-210ENST00000578700 AKNAQ7Z591 1439 aa16.43■□□□□ 0.22
SS18-210ENST00000578700 EHMT2Q96KQ7 1210 aa16.42■□□□□ 0.22
SS18-210ENST00000578700 ATP1B4Q9UN42 357 aaPredicted RBP16.42■□□□□ 0.22
SS18-210ENST00000578700 ZMYM4Q5VZL5 1548 aa16.4■□□□□ 0.22
SS18-210ENST00000578700 FANCAO15360 1455 aa16.39■□□□□ 0.21
SS18-210ENST00000578700 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.39■□□□□ 0.21
SS18-210ENST00000578700 POGZQ7Z3K3 1410 aa16.37■□□□□ 0.21
SS18-210ENST00000578700 TTC37Q6PGP7 1564 aa16.37■□□□□ 0.21
SS18-210ENST00000578700 SIGLEC1Q9BZZ2 1709 aa16.36■□□□□ 0.21
SS18-210ENST00000578700 EFCAB5A4FU69 1503 aa16.36■□□□□ 0.21
SS18-210ENST00000578700 EEA1Q15075 1411 aa16.36■□□□□ 0.21
SS18-210ENST00000578700 YEATS2Q9ULM3 1422 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms