RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 MROH2BQ7Z745 1585 aa13.87□□□□□ -0.19
PTPRM-205ENST00000577827 DDRGK1Q96HY6 314 aa13.86□□□□□ -0.19
PTPRM-205ENST00000577827 EIF5BO60841 1220 aaKnown RBP13.86□□□□□ -0.19
PTPRM-205ENST00000577827 ZNF777Q9ULD5 760 aaPredicted RBP13.86□□□□□ -0.19
PTPRM-205ENST00000577827 BAZ1BQ9UIG0 1483 aaKnown RBP13.85□□□□□ -0.19
PTPRM-205ENST00000577827 ARID3CA6NKF2 412 aa13.84□□□□□ -0.19
PTPRM-205ENST00000577827 GLIPR1L2Q4G1C9 344 aa13.83□□□□□ -0.2
PTPRM-205ENST00000577827 RBM19Q9Y4C8 960 aaKnown RBP13.83□□□□□ -0.2
PTPRM-205ENST00000577827 CCDC88BA6NC98 1476 aa13.83□□□□□ -0.2
PTPRM-205ENST00000577827 FHAD1B1AJZ9 1412 aa13.83□□□□□ -0.2
PTPRM-205ENST00000577827 TSHZ2Q9NRE2 1034 aa13.81□□□□□ -0.2
PTPRM-205ENST00000577827 SIN3AQ96ST3 1273 aa13.81□□□□□ -0.2
PTPRM-205ENST00000577827 PPM1GO15355 546 aaPredicted RBP13.8□□□□□ -0.2
PTPRM-205ENST00000577827 ANP32BQ92688 251 aaKnown RBP13.8□□□□□ -0.2
PTPRM-205ENST00000577827 SETD5Q9C0A6 1442 aa13.8□□□□□ -0.2
PTPRM-205ENST00000577827 NEFMP07197 916 aa13.8□□□□□ -0.2
PTPRM-205ENST00000577827 BCL11AQ9H165 835 aa13.79□□□□□ -0.2
PTPRM-205ENST00000577827 NOP58Q9Y2X3 529 aaKnown RBP13.79□□□□□ -0.2
PTPRM-205ENST00000577827 ABCC8Q09428 1581 aa13.77□□□□□ -0.2
PTPRM-205ENST00000577827 RRP7BPQ9NSQ0 103 aa13.77□□□□□ -0.2
PTPRM-205ENST00000577827 SALL2Q9Y467 1007 aaPredicted RBP13.76□□□□□ -0.21
PTPRM-205ENST00000577827 WDR43Q15061 677 aaKnown RBP eCLIP13.76□□□□□ -0.21
PTPRM-205ENST00000577827 FBLN2P98095 1184 aa13.76□□□□□ -0.21
PTPRM-205ENST00000577827 TSPY4P0CV99 314 aa13.74□□□□□ -0.21
PTPRM-205ENST00000577827 TSPY10P0CW01 314 aa13.74□□□□□ -0.21
PTPRM-205ENST00000577827 TOP2AP11388 1531 aaKnown RBP13.73□□□□□ -0.21
PTPRM-205ENST00000577827 HSP90AA1P07900 732 aaKnown RBP13.71□□□□□ -0.22
PTPRM-205ENST00000577827 BECN1Q14457 450 aa13.71□□□□□ -0.22
PTPRM-205ENST00000577827 RAB3GAP2Q9H2M9 1393 aa13.7□□□□□ -0.22
PTPRM-205ENST00000577827 KANK4Q5T7N3 995 aaPredicted RBP13.69□□□□□ -0.22
PTPRM-205ENST00000577827 DHX57Q6P158 1386 aaKnown RBP13.68□□□□□ -0.22
PTPRM-205ENST00000577827 B4GALNT3Q6L9W6 998 aa13.67□□□□□ -0.22
PTPRM-205ENST00000577827 KDM2AQ9Y2K7 1162 aa13.67□□□□□ -0.22
PTPRM-205ENST00000577827 WIZO95785 1651 aa13.67□□□□□ -0.22
PTPRM-205ENST00000577827 CARMIL1Q5VZK9 1371 aa13.66□□□□□ -0.22
PTPRM-205ENST00000577827 PPP1R15AO75807 674 aaPredicted RBP13.65□□□□□ -0.22
PTPRM-205ENST00000577827 ARHGAP35Q9NRY4 1499 aa13.65□□□□□ -0.22
PTPRM-205ENST00000577827 DEKP35659 375 aaKnown RBP13.65□□□□□ -0.22
PTPRM-205ENST00000577827 CARD11Q9BXL7 1154 aa13.61□□□□□ -0.23
PTPRM-205ENST00000577827 CDCA8Q53HL2 280 aa13.6□□□□□ -0.23
PTPRM-205ENST00000577827 HSPA5P11021 654 aaKnown RBP13.6□□□□□ -0.23
PTPRM-205ENST00000577827 CUX2O14529 1486 aa13.6□□□□□ -0.23
PTPRM-205ENST00000577827 SMARCA2P51531 1590 aa13.57□□□□□ -0.24
PTPRM-205ENST00000577827 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.56□□□□□ -0.243e-6■■■■□ 22.4
PTPRM-205ENST00000577827 CFDP1Q9UEE9 299 aaPredicted RBP13.56□□□□□ -0.24
PTPRM-205ENST00000577827 RAPGEF2Q9Y4G8 1499 aa13.56□□□□□ -0.24
PTPRM-205ENST00000577827 LAS1LQ9Y4W2 734 aaKnown RBP13.56□□□□□ -0.24
PTPRM-205ENST00000577827 KNSTRNQ9Y448 316 aa13.54□□□□□ -0.24
PTPRM-205ENST00000577827 TCERG1O14776 1098 aaKnown RBP13.54□□□□□ -0.24
PTPRM-205ENST00000577827 FANCIQ9NVI1 1328 aa13.53□□□□□ -0.24
PTPRM-205ENST00000577827 PLEKHD1A6NEE1 506 aa13.53□□□□□ -0.24
PTPRM-205ENST00000577827 FMN1Q68DA7 1419 aa13.53□□□□□ -0.24
PTPRM-205ENST00000577827 TRIM44Q96DX7 344 aaPredicted RBP13.52□□□□□ -0.24
PTPRM-205ENST00000577827 GOLGA6L22H0YM25 854 aa13.51□□□□□ -0.25
PTPRM-205ENST00000577827 IPO9Q96P70 1041 aaKnown RBP13.5□□□□□ -0.25
PTPRM-205ENST00000577827 RUSC2Q8N2Y8 1516 aa13.5□□□□□ -0.25
PTPRM-205ENST00000577827 NUDCQ9Y266 331 aa13.49□□□□□ -0.25
PTPRM-205ENST00000577827 ARXQ96QS3 562 aa13.49□□□□□ -0.25
PTPRM-205ENST00000577827 CHGAP10645 457 aaKnown RBP13.48□□□□□ -0.25
PTPRM-205ENST00000577827 SLC24A1O60721 1099 aa13.48□□□□□ -0.25
PTPRM-205ENST00000577827 SMARCA4P51532 1647 aa13.48□□□□□ -0.25
PTPRM-205ENST00000577827 CHMP7Q8WUX9 453 aaPredicted RBP13.47□□□□□ -0.25
PTPRM-205ENST00000577827 MYH16Q9H6N6 1097 aa13.47□□□□□ -0.25
PTPRM-205ENST00000577827 RALBP1Q15311 655 aa13.47□□□□□ -0.25
PTPRM-205ENST00000577827 RGL3Q3MIN7 710 aa13.46□□□□□ -0.25
PTPRM-205ENST00000577827 CFAP53Q96M91 514 aa13.46□□□□□ -0.25
PTPRM-205ENST00000577827 MPHOSPH9Q99550 1183 aa13.45□□□□□ -0.26
PTPRM-205ENST00000577827 KCNH8Q96L42 1107 aa13.45□□□□□ -0.26
PTPRM-205ENST00000577827 L1TD1Q5T7N2 865 aaKnown RBP13.44□□□□□ -0.26
PTPRM-205ENST00000577827 USP35Q9P2H5 1018 aa13.44□□□□□ -0.26
PTPRM-205ENST00000577827 RCAN3Q9UKA8 241 aa13.44□□□□□ -0.26
PTPRM-205ENST00000577827 RGS3P49796 1198 aa13.44□□□□□ -0.26
PTPRM-205ENST00000577827 RTN4Q9NQC3 1192 aaKnown RBP13.44□□□□□ -0.26
PTPRM-205ENST00000577827 PDE3BQ13370 1112 aa13.43□□□□□ -0.26
PTPRM-205ENST00000577827 ROCK2O75116 1388 aaKnown RBP13.43□□□□□ -0.26
PTPRM-205ENST00000577827 MS4A1P11836 297 aa13.43□□□□□ -0.26
PTPRM-205ENST00000577827 TMF1P82094 1093 aa13.43□□□□□ -0.26
PTPRM-205ENST00000577827 SENP3-EIF4A1A0A087X0R7 540 aa13.43□□□□□ -0.26
PTPRM-205ENST00000577827 KTN1Q86UP2 1357 aaKnown RBP13.43□□□□□ -0.26
PTPRM-205ENST00000577827 ZBED9Q6R2W3 1325 aa13.42□□□□□ -0.26
PTPRM-205ENST00000577827 ARID4BQ4LE39 1312 aaPredicted RBP13.4□□□□□ -0.26
PTPRM-205ENST00000577827 PRKCSHP14314 528 aaPredicted RBP13.39□□□□□ -0.27
PTPRM-205ENST00000577827 FTSJ3Q8IY81 847 aaKnown RBP13.39□□□□□ -0.27
PTPRM-205ENST00000577827 L3MBTL2Q969R5 705 aa13.39□□□□□ -0.27
PTPRM-205ENST00000577827 DCAF11Q8TEB1 546 aa13.39□□□□□ -0.27
PTPRM-205ENST00000577827 KIF21BO75037 1637 aa13.38□□□□□ -0.27
PTPRM-205ENST00000577827 CHMP4BQ9H444 224 aaKnown RBP13.38□□□□□ -0.27
PTPRM-205ENST00000577827 CC2D1BQ5T0F9 858 aaKnown RBP13.38□□□□□ -0.27
PTPRM-205ENST00000577827 PRKRIP1Q9H875 184 aaPredicted RBP13.38□□□□□ -0.27
PTPRM-205ENST00000577827 NAP1L5Q96NT1 182 aaPredicted RBP13.36□□□□□ -0.27
PTPRM-205ENST00000577827 ATAD2BQ9ULI0 1458 aa13.36□□□□□ -0.27
PTPRM-205ENST00000577827 NCLP19338 710 aaKnown RBP13.36□□□□□ -0.27
PTPRM-205ENST00000577827 PKD2Q13563 968 aa13.36□□□□□ -0.27
PTPRM-205ENST00000577827 NLRP13Q86W25 1043 aa13.35□□□□□ -0.27
PTPRM-205ENST00000577827 PHLDB1Q86UU1 1377 aa13.34□□□□□ -0.27
PTPRM-205ENST00000577827 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
PTPRM-205ENST00000577827 RRBP1Q9P2E9 1410 aaKnown RBP13.34□□□□□ -0.27
PTPRM-205ENST00000577827 CCDC18Q5T9S5 1454 aa13.33□□□□□ -0.28
PTPRM-205ENST00000577827 FHOD3Q2V2M9 1422 aa13.33□□□□□ -0.28
PTPRM-205ENST00000577827 EIF4G1Q04637 1599 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms