RNA–Protein interactions for RNA: ENST00000577539.1

VAPA-203, Transcript of VAMP associated protein A, humanhuman

Gene VAPA, Length 3,760 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-203ENST00000577539 SPRYD3Q8NCJ5 442 aa8.52□□□□□ -1.05
VAPA-203ENST00000577539 GTPBP6O43824 516 aaPredicted RBP8.51□□□□□ -1.05
VAPA-203ENST00000577539 PPARGC1BQ86YN6 1023 aaKnown RBP8.51□□□□□ -1.05
VAPA-203ENST00000577539 NUBP1P53384 320 aa8.5□□□□□ -1.05
VAPA-203ENST00000577539 ZNF692Q9BU19 519 aaPredicted RBP8.5□□□□□ -1.05
VAPA-203ENST00000577539 PABPN1Q86U42 306 aaKnown RBP eCLIP8.49□□□□□ -1.05
VAPA-203ENST00000577539 ZBTB12Q9Y330 459 aaPredicted RBP8.49□□□□□ -1.05
VAPA-203ENST00000577539 SPDYE2BA6NHP3 402 aa8.49□□□□□ -1.05
VAPA-203ENST00000577539 SPDYE6P0CI01 402 aa8.49□□□□□ -1.05
VAPA-203ENST00000577539 SPDYE2Q495Y8 402 aa8.49□□□□□ -1.05
VAPA-203ENST00000577539 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.49□□□□□ -1.05
VAPA-203ENST00000577539 TRIM26Q12899 539 aaPredicted RBP8.46□□□□□ -1.05
VAPA-203ENST00000577539 CHGAP10645 457 aaKnown RBP8.45□□□□□ -1.06
VAPA-203ENST00000577539 CECR2Q9BXF3 1484 aa8.44□□□□□ -1.06
VAPA-203ENST00000577539 ARXQ96QS3 562 aa8.43□□□□□ -1.06
VAPA-203ENST00000577539 RB1CC1Q8TDY2 1594 aa8.43□□□□□ -1.06
VAPA-203ENST00000577539 KLHL34Q8N239 644 aa8.42□□□□□ -1.06
VAPA-203ENST00000577539 NACADO15069 1562 aa8.41□□□□□ -1.06
VAPA-203ENST00000577539 MROH2BQ7Z745 1585 aa8.38□□□□□ -1.07
VAPA-203ENST00000577539 MIER1Q8N108 512 aa8.37□□□□□ -1.07
VAPA-203ENST00000577539 PLCD3Q8N3E9 789 aa8.36□□□□□ -1.07
VAPA-203ENST00000577539 CREBZFQ9NS37 354 aa8.34□□□□□ -1.08
VAPA-203ENST00000577539 CADPS2Q86UW7 1296 aa8.33□□□□□ -1.08
VAPA-203ENST00000577539 SGIP1Q9BQI5 828 aa8.33□□□□□ -1.08
VAPA-203ENST00000577539 TTBK1Q5TCY1 1321 aaPredicted RBP8.32□□□□□ -1.08
VAPA-203ENST00000577539 WIZO95785 1651 aa8.31□□□□□ -1.08
VAPA-203ENST00000577539 CHRM1P11229 460 aaPredicted RBP8.31□□□□□ -1.08
VAPA-203ENST00000577539 TULP1O00294 542 aaPredicted RBP8.3□□□□□ -1.08
VAPA-203ENST00000577539 CIZ1Q9ULV3 898 aaPredicted RBP8.3□□□□□ -1.08
VAPA-203ENST00000577539 RIOK3O14730 519 aaKnown RBP8.3□□□□□ -1.08
VAPA-203ENST00000577539 ZEB1P37275 1124 aaPredicted RBP8.28□□□□□ -1.08
VAPA-203ENST00000577539 RASEFQ8IZ41 740 aa8.28□□□□□ -1.08
VAPA-203ENST00000577539 GTF3C3Q9Y5Q9 886 aa8.26□□□□□ -1.09
VAPA-203ENST00000577539 BAZ1AQ9NRL2 1556 aaPredicted RBP8.25□□□□□ -1.09
VAPA-203ENST00000577539 UBTFP17480 764 aaKnown RBP8.23□□□□□ -1.09
VAPA-203ENST00000577539 KCNV2Q8TDN2 545 aa8.23□□□□□ -1.09
VAPA-203ENST00000577539 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.21□□□□□ -1.1
VAPA-203ENST00000577539 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.21□□□□□ -1.1
VAPA-203ENST00000577539 ZFP91Q96JP5 570 aaPredicted RBP8.21□□□□□ -1.1
VAPA-203ENST00000577539 TMEM132AQ24JP5 1023 aa8.21□□□□□ -1.1
VAPA-203ENST00000577539 CCER1Q8TC90 406 aaPredicted RBP8.2□□□□□ -1.1
VAPA-203ENST00000577539 ZBTB47Q9UFB7 747 aaPredicted RBP8.2□□□□□ -1.1
VAPA-203ENST00000577539 GSE1Q14687 1217 aa8.19□□□□□ -1.1
VAPA-203ENST00000577539 CCDC88BA6NC98 1476 aa8.19□□□□□ -1.1
VAPA-203ENST00000577539 ABCC8Q09428 1581 aa8.18□□□□□ -1.1
VAPA-203ENST00000577539 POTEDQ86YR6 584 aa8.18□□□□□ -1.1
VAPA-203ENST00000577539 NBR1Q14596 966 aa8.17□□□□□ -1.1
VAPA-203ENST00000577539 VGFO15240 615 aaPredicted RBP8.16□□□□□ -1.1
VAPA-203ENST00000577539 RANGAP1P46060 587 aaPredicted RBP8.16□□□□□ -1.1
VAPA-203ENST00000577539 BRPF1P55201 1214 aaPredicted RBP8.16□□□□□ -1.1
VAPA-203ENST00000577539 TOP2AP11388 1531 aaKnown RBP8.16□□□□□ -1.1
VAPA-203ENST00000577539 BCL11BQ9C0K0 894 aaPredicted RBP8.15□□□□□ -1.1
VAPA-203ENST00000577539 SMARCA4P51532 1647 aa8.15□□□□□ -1.1
VAPA-203ENST00000577539 STK25O00506 426 aa8.14□□□□□ -1.11
VAPA-203ENST00000577539 SOGA1O94964 1423 aa8.14□□□□□ -1.11
VAPA-203ENST00000577539 MFRPQ9BY79 579 aa8.13□□□□□ -1.11
VAPA-203ENST00000577539 SMARCA2P51531 1590 aa8.11□□□□□ -1.11
VAPA-203ENST00000577539 CEP162Q5TB80 1403 aa8.1□□□□□ -1.11
VAPA-203ENST00000577539 PPP1R37O75864 691 aa8.09□□□□□ -1.11
VAPA-203ENST00000577539 RUSC2Q8N2Y8 1516 aa8.09□□□□□ -1.11
VAPA-203ENST00000577539 PYGBP11216 843 aa8.09□□□□□ -1.12
VAPA-203ENST00000577539 HOMEZQ8IX15 550 aa8.09□□□□□ -1.12
VAPA-203ENST00000577539 FBXO22Q8NEZ5 403 aa8.08□□□□□ -1.12
VAPA-203ENST00000577539 WRNQ14191 1432 aaPredicted RBP eCLIP8.07□□□□□ -1.12
VAPA-203ENST00000577539 EIF4G1Q04637 1599 aaKnown RBP8.07□□□□□ -1.12
VAPA-203ENST00000577539 TNIKQ9UKE5 1360 aa8.06□□□□□ -1.12
VAPA-203ENST00000577539 UNC13AQ9UPW8 1703 aa8.06□□□□□ -1.12
VAPA-203ENST00000577539 LMOD2Q6P5Q4 547 aa8.06□□□□□ -1.12
VAPA-203ENST00000577539 NCKAP5LQ9HCH0 1330 aa8.05□□□□□ -1.12
VAPA-203ENST00000577539 DCAF8Q5TAQ9 597 aa8.05□□□□□ -1.12
VAPA-203ENST00000577539 STK24Q9Y6E0 443 aa8.05□□□□□ -1.12
VAPA-203ENST00000577539 ZC3H15Q8WU90 426 aaKnown RBP8.05□□□□□ -1.12
VAPA-203ENST00000577539 EEA1Q15075 1411 aa8.04□□□□□ -1.12
VAPA-203ENST00000577539 REM2Q8IYK8 340 aaPredicted RBP8.04□□□□□ -1.12
VAPA-203ENST00000577539 FAM212AQ96EL1 285 aa8.03□□□□□ -1.12
VAPA-203ENST00000577539 BICRAQ9NZM4 1560 aa8.02□□□□□ -1.12
VAPA-203ENST00000577539 GOLGA3Q08378 1498 aa8.02□□□□□ -1.13
VAPA-203ENST00000577539 BAZ1BQ9UIG0 1483 aaKnown RBP8.02□□□□□ -1.13
VAPA-203ENST00000577539 TESPA1A2RU30 521 aaPredicted RBP8.02□□□□□ -1.13
VAPA-203ENST00000577539 CCDC61Q9Y6R9 512 aa8.01□□□□□ -1.13
VAPA-203ENST00000577539 AKT1S1Q96B36 256 aa8.01□□□□□ -1.13
VAPA-203ENST00000577539 ATAD2BQ9ULI0 1458 aa8□□□□□ -1.13
VAPA-203ENST00000577539 ZMYND10O75800 440 aa7.99□□□□□ -1.13
VAPA-203ENST00000577539 PITPNM1O00562 1244 aa7.99□□□□□ -1.13
VAPA-203ENST00000577539 DIEXFQ68CQ4 756 aaKnown RBP7.99□□□□□ -1.13
VAPA-203ENST00000577539 SPDYE1Q8NFV5 336 aaPredicted RBP7.98□□□□□ -1.13
VAPA-203ENST00000577539 CLIP1P30622 1438 aa7.98□□□□□ -1.13
VAPA-203ENST00000577539 SEMA3EO15041 775 aa7.98□□□□□ -1.13
VAPA-203ENST00000577539 MS4A4AQ96JQ5 239 aa7.97□□□□□ -1.13
VAPA-203ENST00000577539 PLEKHG5O94827 1062 aa7.97□□□□□ -1.13
VAPA-203ENST00000577539 P3H3Q8IVL6 736 aa7.97□□□□□ -1.13
VAPA-203ENST00000577539 CEP164Q9UPV0 1460 aa7.97□□□□□ -1.13
VAPA-203ENST00000577539 ARIH1Q9Y4X5 557 aaPredicted RBP7.96□□□□□ -1.14
VAPA-203ENST00000577539 SYNJ1O43426 1573 aa7.95□□□□□ -1.14
VAPA-203ENST00000577539 ARHGEF1Q92888 912 aaKnown RBP7.94□□□□□ -1.14
VAPA-203ENST00000577539 PCDHB8Q9UN66 801 aa7.94□□□□□ -1.14
VAPA-203ENST00000577539 PCDHB13Q9Y5F0 798 aa7.94□□□□□ -1.14
VAPA-203ENST00000577539 SLC24A3Q9HC58 644 aa7.94□□□□□ -1.14
VAPA-203ENST00000577539 PRR29P0C7W0 189 aa7.93□□□□□ -1.14
VAPA-203ENST00000577539 MFSD10Q14728 455 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms