RNA–Protein interactions for RNA: ENST00000576409.5

ATPAF1-214, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATPAF1, Length 4,158 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-214ENST00000576409 ZBTB47Q9UFB7 747 aaPredicted RBP24.3■■□□□ 1.48
ATPAF1-214ENST00000576409 RBM19Q9Y4C8 960 aaKnown RBP24.28■■□□□ 1.48
ATPAF1-214ENST00000576409 B4GALNT3Q6L9W6 998 aa24.27■■□□□ 1.48
ATPAF1-214ENST00000576409 EIF4G2P78344 907 aaKnown RBP eCLIP24.27■■□□□ 1.48
ATPAF1-214ENST00000576409 MTUS2Q5JR59 1369 aa24.26■■□□□ 1.47
ATPAF1-214ENST00000576409 CEP164Q9UPV0 1460 aa24.23■■□□□ 1.47
ATPAF1-214ENST00000576409 CANXP27824 592 aaKnown RBP24.21■■□□□ 1.47
ATPAF1-214ENST00000576409 ARXQ96QS3 562 aa24.17■■□□□ 1.46
ATPAF1-214ENST00000576409 CCNB3Q8WWL7 1395 aa24.15■■□□□ 1.46
ATPAF1-214ENST00000576409 RUSC2Q8N2Y8 1516 aa24.13■■□□□ 1.45
ATPAF1-214ENST00000576409 RTN4Q9NQC3 1192 aaKnown RBP24.09■■□□□ 1.45
ATPAF1-214ENST00000576409 VPS8Q8N3P4 1428 aa24.08■■□□□ 1.45
ATPAF1-214ENST00000576409 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.08■■□□□ 1.458e-11■■■□□ 18.6
ATPAF1-214ENST00000576409 PPP4R2Q9NY27 417 aa24.01■■□□□ 1.43
ATPAF1-214ENST00000576409 LAS1LQ9Y4W2 734 aaKnown RBP24.01■■□□□ 1.43
ATPAF1-214ENST00000576409 FOXD1Q16676 465 aa23.99■■□□□ 1.43
ATPAF1-214ENST00000576409 WIZO95785 1651 aa23.98■■□□□ 1.43
ATPAF1-214ENST00000576409 RGL3Q3MIN7 710 aa23.97■■□□□ 1.43
ATPAF1-214ENST00000576409 RAB3GAP2Q9H2M9 1393 aa23.97■■□□□ 1.43
ATPAF1-214ENST00000576409 BAZ1AQ9NRL2 1556 aaPredicted RBP23.97■■□□□ 1.43
ATPAF1-214ENST00000576409 KIF27Q86VH2 1401 aa23.95■■□□□ 1.42
ATPAF1-214ENST00000576409 DHX57Q6P158 1386 aaKnown RBP23.9■■□□□ 1.42
ATPAF1-214ENST00000576409 BAZ1BQ9UIG0 1483 aaKnown RBP23.89■■□□□ 1.41
ATPAF1-214ENST00000576409 HSPA5P11021 654 aaKnown RBP23.88■■□□□ 1.41
ATPAF1-214ENST00000576409 NOP58Q9Y2X3 529 aaKnown RBP23.88■■□□□ 1.41
ATPAF1-214ENST00000576409 SENP3Q9H4L4 574 aaPredicted RBP23.87■■□□□ 1.41
ATPAF1-214ENST00000576409 DEKP35659 375 aaKnown RBP23.87■■□□□ 1.41
ATPAF1-214ENST00000576409 CCER2I3L3R5 266 aa23.86■■□□□ 1.41
ATPAF1-214ENST00000576409 CHGAP10645 457 aaKnown RBP23.86■■□□□ 1.41
ATPAF1-214ENST00000576409 PPP1R15AO75807 674 aaPredicted RBP23.86■■□□□ 1.41
ATPAF1-214ENST00000576409 NACADO15069 1562 aa23.85■■□□□ 1.41
ATPAF1-214ENST00000576409 SETD5Q9C0A6 1442 aa23.84■■□□□ 1.41
ATPAF1-214ENST00000576409 RAPGEF2Q9Y4G8 1499 aa23.82■■□□□ 1.4
ATPAF1-214ENST00000576409 TSPY4P0CV99 314 aa23.81■■□□□ 1.4
ATPAF1-214ENST00000576409 TSPY10P0CW01 314 aa23.81■■□□□ 1.4
ATPAF1-214ENST00000576409 WDR43Q15061 677 aaKnown RBP eCLIP23.8■■□□□ 1.4
ATPAF1-214ENST00000576409 NEFMP07197 916 aa23.78■■□□□ 1.4
ATPAF1-214ENST00000576409 CARD11Q9BXL7 1154 aa23.78■■□□□ 1.4
ATPAF1-214ENST00000576409 RGS3P49796 1198 aa23.74■■□□□ 1.39
ATPAF1-214ENST00000576409 CARMIL1Q5VZK9 1371 aa23.73■■□□□ 1.39
ATPAF1-214ENST00000576409 SLC24A1O60721 1099 aa23.71■■□□□ 1.39
ATPAF1-214ENST00000576409 HSP90AA1P07900 732 aaKnown RBP23.7■■□□□ 1.38
ATPAF1-214ENST00000576409 CUX2O14529 1486 aa23.69■■□□□ 1.38
ATPAF1-214ENST00000576409 CC2D1BQ5T0F9 858 aaKnown RBP23.69■■□□□ 1.38
ATPAF1-214ENST00000576409 UPF2Q9HAU5 1272 aaKnown RBP23.68■■□□□ 1.38
ATPAF1-214ENST00000576409 TIMELESSQ9UNS1 1208 aa23.68■■□□□ 1.38
ATPAF1-214ENST00000576409 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.67■■□□□ 1.38
ATPAF1-214ENST00000576409 CFDP1Q9UEE9 299 aaPredicted RBP23.67■■□□□ 1.38
ATPAF1-214ENST00000576409 NEUROD2Q15784 382 aa23.66■■□□□ 1.38
ATPAF1-214ENST00000576409 L3MBTL2Q969R5 705 aa23.61■■□□□ 1.37
ATPAF1-214ENST00000576409 DCAF11Q8TEB1 546 aa23.58■■□□□ 1.37
ATPAF1-214ENST00000576409 CHMP7Q8WUX9 453 aaPredicted RBP23.56■■□□□ 1.36
ATPAF1-214ENST00000576409 MPHOSPH9Q99550 1183 aa23.54■■□□□ 1.36
ATPAF1-214ENST00000576409 FHAD1B1AJZ9 1412 aa23.53■■□□□ 1.36
ATPAF1-214ENST00000576409 TNNT2P45379 298 aaPredicted RBP23.51■■□□□ 1.35
ATPAF1-214ENST00000576409 DDRGK1Q96HY6 314 aa23.5■■□□□ 1.35
ATPAF1-214ENST00000576409 PPM1GO15355 546 aaPredicted RBP23.49■■□□□ 1.35
ATPAF1-214ENST00000576409 PLEKHD1A6NEE1 506 aa23.48■■□□□ 1.35
ATPAF1-214ENST00000576409 FRAT1Q92837 279 aaPredicted RBP23.48■■□□□ 1.35
ATPAF1-214ENST00000576409 TOP2AP11388 1531 aaKnown RBP23.48■■□□□ 1.35
ATPAF1-214ENST00000576409 KNSTRNQ9Y448 316 aa23.48■■□□□ 1.35
ATPAF1-214ENST00000576409 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.47■■□□□ 1.35
ATPAF1-214ENST00000576409 ARHGAP35Q9NRY4 1499 aa23.47■■□□□ 1.35
ATPAF1-214ENST00000576409 PKD2Q13563 968 aa23.46■■□□□ 1.35
ATPAF1-214ENST00000576409 FHOD3Q2V2M9 1422 aa23.44■■□□□ 1.34
ATPAF1-214ENST00000576409 RCAN3Q9UKA8 241 aa23.4■■□□□ 1.34
ATPAF1-214ENST00000576409 PRKRIP1Q9H875 184 aaPredicted RBP23.4■■□□□ 1.34
ATPAF1-214ENST00000576409 SPRYD3Q8NCJ5 442 aa23.39■■□□□ 1.34
ATPAF1-214ENST00000576409 ANP32BQ92688 251 aaKnown RBP23.38■■□□□ 1.33
ATPAF1-214ENST00000576409 TDRD9Q8NDG6 1382 aaKnown RBP23.38■■□□□ 1.33
ATPAF1-214ENST00000576409 IPO9Q96P70 1041 aaKnown RBP23.37■■□□□ 1.33
ATPAF1-214ENST00000576409 NUDCQ9Y266 331 aa23.37■■□□□ 1.33
ATPAF1-214ENST00000576409 SLC4A3P48751 1232 aa23.36■■□□□ 1.33
ATPAF1-214ENST00000576409 BECN1Q14457 450 aa23.34■■□□□ 1.33
ATPAF1-214ENST00000576409 PLIN1O60240 522 aa23.34■■□□□ 1.33
ATPAF1-214ENST00000576409 ERICH6BQ5W0A0 696 aa23.33■■□□□ 1.33
ATPAF1-214ENST00000576409 EIF4G1Q04637 1599 aaKnown RBP23.29■■□□□ 1.32
ATPAF1-214ENST00000576409 SLKQ9H2G2 1235 aaPredicted RBP23.27■■□□□ 1.32
ATPAF1-214ENST00000576409 EXOC6Q8TAG9 804 aa23.27■■□□□ 1.32
ATPAF1-214ENST00000576409 STAG3Q9UJ98 1225 aa23.26■■□□□ 1.31
ATPAF1-214ENST00000576409 PLPPR3Q6T4P5 718 aa23.25■■□□□ 1.31
ATPAF1-214ENST00000576409 PHLDB1Q86UU1 1377 aa23.25■■□□□ 1.31
ATPAF1-214ENST00000576409 CCDC184Q52MB2 194 aa23.24■■□□□ 1.31
ATPAF1-214ENST00000576409 FMN1Q68DA7 1419 aa23.24■■□□□ 1.31
ATPAF1-214ENST00000576409 TPRNQ4KMQ1 711 aa23.23■■□□□ 1.31
ATPAF1-214ENST00000576409 KIF21BO75037 1637 aa23.23■■□□□ 1.31
ATPAF1-214ENST00000576409 FANCIQ9NVI1 1328 aa23.22■■□□□ 1.31
ATPAF1-214ENST00000576409 ST20-MTHFSA0A0A6YYL1 179 aa23.22■■□□□ 1.31
ATPAF1-214ENST00000576409 TCERG1O14776 1098 aaKnown RBP23.2■■□□□ 1.31
ATPAF1-214ENST00000576409 NCLP19338 710 aaKnown RBP23.2■■□□□ 1.31
ATPAF1-214ENST00000576409 FTSJ3Q8IY81 847 aaKnown RBP23.2■■□□□ 1.31
ATPAF1-214ENST00000576409 SMARCA2P51531 1590 aa23.2■■□□□ 1.3
ATPAF1-214ENST00000576409 ARID4BQ4LE39 1312 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-214ENST00000576409 NAP1L5Q96NT1 182 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-214ENST00000576409 WASHC2AQ641Q2 1341 aa23.19■■□□□ 1.3
ATPAF1-214ENST00000576409 GZF1Q9H116 711 aaPredicted RBP23.19■■□□□ 1.3
ATPAF1-214ENST00000576409 TRIM44Q96DX7 344 aaPredicted RBP23.18■■□□□ 1.3
ATPAF1-214ENST00000576409 SMARCA4P51532 1647 aa23.18■■□□□ 1.3
ATPAF1-214ENST00000576409 TMF1P82094 1093 aa23.18■■□□□ 1.3
ATPAF1-214ENST00000576409 GLIPR1L2Q4G1C9 344 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms