RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 POLA1P09884 1462 aaPredicted RBP14.68□□□□□ -0.06
SMG6-213ENST00000573166 CUX1P39880 1505 aa14.67□□□□□ -0.06
SMG6-213ENST00000573166 TSPY4P0CV99 314 aa14.67□□□□□ -0.06
SMG6-213ENST00000573166 TSPY10P0CW01 314 aa14.67□□□□□ -0.06
SMG6-213ENST00000573166 NEUROD1Q13562 356 aa14.65□□□□□ -0.07
SMG6-213ENST00000573166 IFT140Q96RY7 1462 aa14.64□□□□□ -0.07
SMG6-213ENST00000573166 DNMBPQ6XZF7 1577 aa14.63□□□□□ -0.07
SMG6-213ENST00000573166 CFDP1Q9UEE9 299 aaPredicted RBP14.62□□□□□ -0.07
SMG6-213ENST00000573166 GRIN2BQ13224 1484 aa14.62□□□□□ -0.07
SMG6-213ENST00000573166 ESF1Q9H501 851 aaKnown RBP14.61□□□□□ -0.07
SMG6-213ENST00000573166 TOP2BQ02880 1626 aa14.6□□□□□ -0.07
SMG6-213ENST00000573166 TRHP20396 242 aaPredicted RBP14.58□□□□□ -0.08
SMG6-213ENST00000573166 FHOD3Q2V2M9 1422 aa14.58□□□□□ -0.08
SMG6-213ENST00000573166 FMN1Q68DA7 1419 aa14.58□□□□□ -0.08
SMG6-213ENST00000573166 POLR3GLQ9BT43 218 aa14.57□□□□□ -0.08
SMG6-213ENST00000573166 VPS8Q8N3P4 1428 aa14.56□□□□□ -0.08
SMG6-213ENST00000573166 CYB5RLQ6IPT4 315 aa14.56□□□□□ -0.08
SMG6-213ENST00000573166 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.55□□□□□ -0.08
SMG6-213ENST00000573166 URB2Q14146 1524 aaKnown RBP14.55□□□□□ -0.08
SMG6-213ENST00000573166 ZNF326Q5BKZ1 582 aaKnown RBP14.53□□□□□ -0.08
SMG6-213ENST00000573166 PLPPR3Q6T4P5 718 aa14.53□□□□□ -0.08
SMG6-213ENST00000573166 RRP7BPQ9NSQ0 103 aa14.52□□□□□ -0.08
SMG6-213ENST00000573166 PTPRGP23470 1445 aa14.52□□□□□ -0.09
SMG6-213ENST00000573166 CCNB3Q8WWL7 1395 aa14.51□□□□□ -0.09
SMG6-213ENST00000573166 KANK4Q5T7N3 995 aaPredicted RBP14.49□□□□□ -0.09
SMG6-213ENST00000573166 SNAPC4Q5SXM2 1469 aa14.49□□□□□ -0.09
SMG6-213ENST00000573166 ABCA10Q8WWZ4 1543 aa14.48□□□□□ -0.09
SMG6-213ENST00000573166 CHGAP10645 457 aaKnown RBP14.45□□□□□ -0.1
SMG6-213ENST00000573166 BCANQ96GW7 911 aa14.44□□□□□ -0.1
SMG6-213ENST00000573166 ZNF608Q9ULD9 1512 aaPredicted RBP14.43□□□□□ -0.1
SMG6-213ENST00000573166 STAG3Q9UJ98 1225 aa14.42□□□□□ -0.1
SMG6-213ENST00000573166 PRXQ9BXM0 1461 aa14.41□□□□□ -0.1
SMG6-213ENST00000573166 ARID4BQ4LE39 1312 aaPredicted RBP14.41□□□□□ -0.1
SMG6-213ENST00000573166 CNGB1Q14028 1251 aaPredicted RBP14.4□□□□□ -0.1
SMG6-213ENST00000573166 PELP1Q8IZL8 1130 aaKnown RBP14.39□□□□□ -0.11
SMG6-213ENST00000573166 EFCAB2Q5VUJ9 269 aa14.39□□□□□ -0.11
SMG6-213ENST00000573166 SLC4A1APQ9BWU0 796 aaKnown RBP14.38□□□□□ -0.11
SMG6-213ENST00000573166 PRG4Q92954 1404 aaPredicted RBP14.38□□□□□ -0.11
SMG6-213ENST00000573166 ERICH3Q5RHP9 1530 aa14.36□□□□□ -0.11
SMG6-213ENST00000573166 ARHGAP35Q9NRY4 1499 aa14.36□□□□□ -0.11
SMG6-213ENST00000573166 KIF21BO75037 1637 aa14.34□□□□□ -0.11
SMG6-213ENST00000573166 SYNJ2O15056 1496 aa14.33□□□□□ -0.12
SMG6-213ENST00000573166 YTHDC1Q96MU7 727 aaKnown RBP14.32□□□□□ -0.12
SMG6-213ENST00000573166 MAGI1Q96QZ7 1491 aaPredicted RBP14.32□□□□□ -0.12
SMG6-213ENST00000573166 BIVM-ERCC5R4GMW8 1640 aa14.32□□□□□ -0.12
SMG6-213ENST00000573166 TONSLQ96HA7 1378 aa14.32□□□□□ -0.12
SMG6-213ENST00000573166 CCDC18Q5T9S5 1454 aa14.31□□□□□ -0.12
SMG6-213ENST00000573166 KIF21AQ7Z4S6 1674 aa14.31□□□□□ -0.12
SMG6-213ENST00000573166 KIAA0586Q9BVV6 1533 aa14.29□□□□□ -0.12
SMG6-213ENST00000573166 GRIN2AQ12879 1464 aa14.27□□□□□ -0.12
SMG6-213ENST00000573166 HNRNPMP52272 730 aaKnown RBP eCLIP14.27□□□□□ -0.12
SMG6-213ENST00000573166 MLECQ14165 292 aa14.27□□□□□ -0.13
SMG6-213ENST00000573166 KDM2AQ9Y2K7 1162 aa14.25□□□□□ -0.13
SMG6-213ENST00000573166 FAM69CQ0P6D2 419 aa14.24□□□□□ -0.13
SMG6-213ENST00000573166 ACIN1Q9UKV3 1341 aaKnown RBP14.24□□□□□ -0.13
SMG6-213ENST00000573166 ARAP1Q96P48 1450 aa14.24□□□□□ -0.13
SMG6-213ENST00000573166 PRDM2Q13029 1718 aa14.23□□□□□ -0.13
SMG6-213ENST00000573166 GGT6Q6P531 493 aa14.23□□□□□ -0.13
SMG6-213ENST00000573166 CUL7Q14999 1698 aa14.22□□□□□ -0.13
SMG6-213ENST00000573166 RGL3Q3MIN7 710 aa14.21□□□□□ -0.14
SMG6-213ENST00000573166 WDR62O43379 1518 aa14.2□□□□□ -0.14
SMG6-213ENST00000573166 SPAG9O60271 1321 aaKnown RBP14.2□□□□□ -0.14
SMG6-213ENST00000573166 SENP3Q9H4L4 574 aaPredicted RBP14.2□□□□□ -0.14
SMG6-213ENST00000573166 CASKIN1Q8WXD9 1431 aa14.19□□□□□ -0.14
SMG6-213ENST00000573166 RSPH4AQ5TD94 716 aa14.19□□□□□ -0.14
SMG6-213ENST00000573166 IQGAP2Q13576 1575 aa14.19□□□□□ -0.14
SMG6-213ENST00000573166 CENPBP07199 599 aaPredicted RBP14.18□□□□□ -0.14
SMG6-213ENST00000573166 EFCAB5A4FU69 1503 aa14.18□□□□□ -0.14
SMG6-213ENST00000573166 SCAF1Q9H7N4 1312 aaKnown RBP14.17□□□□□ -0.14
SMG6-213ENST00000573166 ANKRD30AQ9BXX3 1397 aa14.16□□□□□ -0.14
SMG6-213ENST00000573166 PPP1R15AO75807 674 aaPredicted RBP14.15□□□□□ -0.14
SMG6-213ENST00000573166 KIF3BO15066 747 aa14.15□□□□□ -0.14
SMG6-213ENST00000573166 KANK1Q14678 1352 aa14.15□□□□□ -0.15
SMG6-213ENST00000573166 DIEXFQ68CQ4 756 aaKnown RBP14.14□□□□□ -0.15
SMG6-213ENST00000573166 SETD5Q9C0A6 1442 aa14.12□□□□□ -0.15
SMG6-213ENST00000573166 UACAQ9BZF9 1416 aa14.12□□□□□ -0.15
SMG6-213ENST00000573166 ZNF644Q9H582 1327 aaPredicted RBP14.12□□□□□ -0.15
SMG6-213ENST00000573166 FYCO1Q9BQS8 1478 aa14.11□□□□□ -0.15
SMG6-213ENST00000573166 ZNF316A6NFI3 1004 aaPredicted RBP14.11□□□□□ -0.15
SMG6-213ENST00000573166 SIN3AQ96ST3 1273 aa14.1□□□□□ -0.15
SMG6-213ENST00000573166 EIF4G3O43432 1585 aaKnown RBP14.09□□□□□ -0.15
SMG6-213ENST00000573166 LRRC9Q6ZRR7 1453 aa14.09□□□□□ -0.15
SMG6-213ENST00000573166 NUP155O75694 1391 aa14.09□□□□□ -0.15
SMG6-213ENST00000573166 PKD2Q13563 968 aa14.08□□□□□ -0.15
SMG6-213ENST00000573166 PLB1Q6P1J6 1458 aa14.07□□□□□ -0.16
SMG6-213ENST00000573166 GTF3C3Q9Y5Q9 886 aa14.07□□□□□ -0.16
SMG6-213ENST00000573166 PHLDB1Q86UU1 1377 aa14.06□□□□□ -0.16
SMG6-213ENST00000573166 FOXD1Q16676 465 aa14.06□□□□□ -0.16
SMG6-213ENST00000573166 RAB3GAP2Q9H2M9 1393 aa14.06□□□□□ -0.16
SMG6-213ENST00000573166 MYOM3Q5VTT5 1437 aa14.05□□□□□ -0.16
SMG6-213ENST00000573166 NCOA2Q15596 1464 aa14.05□□□□□ -0.16
SMG6-213ENST00000573166 TROQ12816 1431 aaPredicted RBP14.04□□□□□ -0.16
SMG6-213ENST00000573166 FGD6Q6ZV73 1430 aa14.04□□□□□ -0.16
SMG6-213ENST00000573166 AFAP1Q8N556 730 aa14.03□□□□□ -0.16
SMG6-213ENST00000573166 WASHC2CQ9Y4E1 1318 aa14.03□□□□□ -0.16
SMG6-213ENST00000573166 MPHOSPH9Q99550 1183 aa14.03□□□□□ -0.16
SMG6-213ENST00000573166 ANP32CO43423 234 aa14.02□□□□□ -0.16
SMG6-213ENST00000573166 MYT1Q01538 1121 aa14.02□□□□□ -0.16
SMG6-213ENST00000573166 ADAMTS12P58397 1594 aa14.02□□□□□ -0.16
SMG6-213ENST00000573166 HIRIP3Q9BW71 556 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms