RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 JPH4Q96JJ6 628 aa35.56■■■■□ 3.28
CCDC40-206ENST00000572083 ABCC10Q5T3U5 1492 aa35.4■■■■□ 3.26
CCDC40-206ENST00000572083 FAM69CQ0P6D2 419 aa35.38■■■■□ 3.25
CCDC40-206ENST00000572083 MAPKBP1O60336 1514 aa35.37■■■■□ 3.25
CCDC40-206ENST00000572083 ADCY10Q96PN6 1610 aa35.37■■■■□ 3.25
CCDC40-206ENST00000572083 DIP2BQ9P265 1576 aa35.35■■■■□ 3.25
CCDC40-206ENST00000572083 NPM1P06748 294 aaKnown RBP eCLIP35.34■■■■□ 3.25
CCDC40-206ENST00000572083 KIAA0586Q9BVV6 1533 aa35.26■■■■□ 3.23
CCDC40-206ENST00000572083 CUL7Q14999 1698 aa35.21■■■■□ 3.23
CCDC40-206ENST00000572083 IGF1RP08069 1367 aa35.2■■■■□ 3.23
CCDC40-206ENST00000572083 KDM6BO15054 1643 aa35.17■■■■□ 3.22
CCDC40-206ENST00000572083 KIF27Q86VH2 1401 aa35.16■■■■□ 3.22
CCDC40-206ENST00000572083 TSPOAP1O95153 1857 aa35.14■■■■□ 3.22
CCDC40-206ENST00000572083 TTBK1Q5TCY1 1321 aaPredicted RBP35.04■■■■□ 3.2
CCDC40-206ENST00000572083 PTPRGP23470 1445 aa35.03■■■■□ 3.2
CCDC40-206ENST00000572083 KDM4FA0A1W2PPD8 638 aa34.98■■■■□ 3.19
CCDC40-206ENST00000572083 CARMIL1Q5VZK9 1371 aa34.97■■■■□ 3.19
CCDC40-206ENST00000572083 ABCC2Q92887 1545 aa34.93■■■■□ 3.18
CCDC40-206ENST00000572083 CARMIL2Q6F5E8 1435 aa34.92■■■■□ 3.18
CCDC40-206ENST00000572083 TNIKQ9UKE5 1360 aa34.92■■■■□ 3.18
CCDC40-206ENST00000572083 IQGAP2Q13576 1575 aa34.91■■■■□ 3.18
CCDC40-206ENST00000572083 ASXL2Q76L83 1435 aa34.87■■■■□ 3.17
CCDC40-206ENST00000572083 PPRC1Q5VV67 1664 aaKnown RBP34.83■■■■□ 3.17
CCDC40-206ENST00000572083 PLB1Q6P1J6 1458 aa34.82■■■■□ 3.16
CCDC40-206ENST00000572083 GLI2P10070 1586 aa34.8■■■■□ 3.16
CCDC40-206ENST00000572083 UHRF1BP1LA0JNW5 1464 aa34.78■■■■□ 3.16
CCDC40-206ENST00000572083 DISP1Q96F81 1524 aa34.76■■■■□ 3.16
CCDC40-206ENST00000572083 UACAQ9BZF9 1416 aa34.75■■■■□ 3.15
CCDC40-206ENST00000572083 EPRSP07814 1512 aaKnown RBP34.65■■■■□ 3.14
CCDC40-206ENST00000572083 KDM5BQ9UGL1 1544 aa34.65■■■■□ 3.14
CCDC40-206ENST00000572083 UGGT2Q9NYU1 1516 aa34.64■■■■□ 3.14
CCDC40-206ENST00000572083 ADGRL1O94910 1474 aa34.64■■■■□ 3.14
CCDC40-206ENST00000572083 ZCCHC11Q5TAX3 1644 aaKnown RBP34.63■■■■□ 3.13
CCDC40-206ENST00000572083 MAP3K4Q9Y6R4 1608 aa34.63■■■■□ 3.13
CCDC40-206ENST00000572083 COL17A1Q9UMD9 1497 aaPredicted RBP34.61■■■■□ 3.13
CCDC40-206ENST00000572083 RAPGEF2Q9Y4G8 1499 aa34.61■■■■□ 3.13
CCDC40-206ENST00000572083 KIAA0556O60303 1618 aa34.61■■■■□ 3.13
CCDC40-206ENST00000572083 TEX14Q8IWB6 1497 aa34.53■■■■□ 3.12
CCDC40-206ENST00000572083 WDR7Q9Y4E6 1490 aa34.46■■■■□ 3.11
CCDC40-206ENST00000572083 CTTNBP2Q8WZ74 1663 aa34.41■■■■□ 3.1
CCDC40-206ENST00000572083 ILDR1Q86SU0 546 aaPredicted RBP34.41■■■■□ 3.1
CCDC40-206ENST00000572083 HECW2Q9P2P5 1572 aa34.33■■■■□ 3.09
CCDC40-206ENST00000572083 CFAP43Q8NDM7 1665 aa34.29■■■■□ 3.08
CCDC40-206ENST00000572083 ABCA8O94911 1581 aa34.29■■■■□ 3.08
CCDC40-206ENST00000572083 GOLGA3Q08378 1498 aa34.29■■■■□ 3.08
CCDC40-206ENST00000572083 CD109Q6YHK3 1445 aa34.28■■■■□ 3.08
CCDC40-206ENST00000572083 MAGI3Q5TCQ9 1506 aa34.25■■■■□ 3.07
CCDC40-206ENST00000572083 KCNH8Q96L42 1107 aa34.24■■■■□ 3.07
CCDC40-206ENST00000572083 PRXQ9BXM0 1461 aa34.14■■■■□ 3.06
CCDC40-206ENST00000572083 KIF21BO75037 1637 aa34.12■■■■□ 3.05
CCDC40-206ENST00000572083 ARID3CA6NKF2 412 aa34.07■■■■□ 3.04
CCDC40-206ENST00000572083 ARAP3Q8WWN8 1544 aa34■■■■□ 3.03
CCDC40-206ENST00000572083 P3H3Q8IVL6 736 aa34■■■■□ 3.03
CCDC40-206ENST00000572083 ATP10BO94823 1461 aa33.99■■■■□ 3.03
CCDC40-206ENST00000572083 ABCA9Q8IUA7 1624 aa33.94■■■■□ 3.02
CCDC40-206ENST00000572083 FAM9AQ8IZU1 332 aaPredicted RBP33.9■■■■□ 3.02
CCDC40-206ENST00000572083 SAMD9Q5K651 1589 aa33.88■■■■□ 3.01
CCDC40-206ENST00000572083 RAPGEF6Q8TEU7 1601 aa33.86■■■■□ 3.01
CCDC40-206ENST00000572083 ADAMTSL3P82987 1691 aa33.82■■■■□ 3
CCDC40-206ENST00000572083 PHLDB1Q86UU1 1377 aa33.82■■■■□ 3
CCDC40-206ENST00000572083 RAPGEF3O95398 923 aa33.81■■■■□ 3
CCDC40-206ENST00000572083 PTPRMP28827 1452 aa33.8■■■■□ 3
CCDC40-206ENST00000572083 NEO1Q92859 1461 aa33.78■■■■□ 3
CCDC40-206ENST00000572083 FRMPD1Q5SYB0 1578 aa33.77■■■■□ 3
CCDC40-206ENST00000572083 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.76■■■□□ 2.99
CCDC40-206ENST00000572083 HNRNPUL2Q1KMD3 747 aaKnown RBP33.76■■■□□ 2.99
CCDC40-206ENST00000572083 NUP153P49790 1475 aaKnown RBP33.72■■■□□ 2.99
CCDC40-206ENST00000572083 BCORL1Q5H9F3 1711 aa33.71■■■□□ 2.99
CCDC40-206ENST00000572083 CSRNP3Q8WYN3 585 aa33.7■■■□□ 2.99
CCDC40-206ENST00000572083 MADDQ8WXG6 1647 aa33.69■■■□□ 2.98
CCDC40-206ENST00000572083 RANGAP1P46060 587 aaPredicted RBP33.66■■■□□ 2.98
CCDC40-206ENST00000572083 FHOD3Q2V2M9 1422 aa33.65■■■□□ 2.98
CCDC40-206ENST00000572083 ARID4BQ4LE39 1312 aaPredicted RBP33.65■■■□□ 2.98
CCDC40-206ENST00000572083 ARHGEF40Q8TER5 1519 aa33.62■■■□□ 2.97
CCDC40-206ENST00000572083 FBXO41Q8TF61 875 aa33.61■■■□□ 2.97
CCDC40-206ENST00000572083 PCF11O94913 1555 aaKnown RBP33.6■■■□□ 2.97
CCDC40-206ENST00000572083 RICTORQ6R327 1708 aa33.58■■■□□ 2.97
CCDC40-206ENST00000572083 DENND4BO75064 1496 aaPredicted RBP33.56■■■□□ 2.96
CCDC40-206ENST00000572083 RIMS1Q86UR5 1692 aaKnown RBP33.55■■■□□ 2.96
CCDC40-206ENST00000572083 LMTK3Q96Q04 1460 aa33.55■■■□□ 2.96
CCDC40-206ENST00000572083 CFAP74Q9C0B2 1584 aa33.52■■■□□ 2.96
CCDC40-206ENST00000572083 FANCAO15360 1455 aa33.52■■■□□ 2.96
CCDC40-206ENST00000572083 AKNAQ7Z591 1439 aa33.52■■■□□ 2.96
CCDC40-206ENST00000572083 PLEKHD1A6NEE1 506 aa33.51■■■□□ 2.95
CCDC40-206ENST00000572083 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.51■■■□□ 2.95
CCDC40-206ENST00000572083 TTC37Q6PGP7 1564 aa33.5■■■□□ 2.95
CCDC40-206ENST00000572083 EEA1Q15075 1411 aa33.47■■■□□ 2.95
CCDC40-206ENST00000572083 ZMYM4Q5VZL5 1548 aa33.43■■■□□ 2.94
CCDC40-206ENST00000572083 SIGLEC1Q9BZZ2 1709 aa33.42■■■□□ 2.94
CCDC40-206ENST00000572083 EFCAB5A4FU69 1503 aa33.42■■■□□ 2.94
CCDC40-206ENST00000572083 ZFYVE16Q7Z3T8 1539 aa33.4■■■□□ 2.94
CCDC40-206ENST00000572083 YEATS2Q9ULM3 1422 aa33.4■■■□□ 2.94
CCDC40-206ENST00000572083 PLPPR3Q6T4P5 718 aa33.4■■■□□ 2.94
CCDC40-206ENST00000572083 CDK13Q14004 1512 aaKnown RBP33.39■■■□□ 2.94
CCDC40-206ENST00000572083 POGZQ7Z3K3 1410 aa33.36■■■□□ 2.93
CCDC40-206ENST00000572083 HSPA2P54652 639 aa33.35■■■□□ 2.93
CCDC40-206ENST00000572083 HECW1Q76N89 1606 aa33.33■■■□□ 2.93
CCDC40-206ENST00000572083 MAGI2Q86UL8 1455 aa33.3■■■□□ 2.92
CCDC40-206ENST00000572083 MLECQ14165 292 aa33.28■■■□□ 2.92
CCDC40-206ENST00000572083 FER1L4A9Z1Z3 1794 aa33.28■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms