RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TSPY4P0CV99 314 aa20.64■□□□□ 0.89
CIITA-204ENST00000570546 TSPY10P0CW01 314 aa20.64■□□□□ 0.89
CIITA-204ENST00000570546 ABCC8Q09428 1581 aa20.62■□□□□ 0.89
CIITA-204ENST00000570546 CCDC88BA6NC98 1476 aa20.6■□□□□ 0.89
CIITA-204ENST00000570546 CHGAP10645 457 aaKnown RBP20.59■□□□□ 0.89
CIITA-204ENST00000570546 SIN3AQ96ST3 1273 aa20.59■□□□□ 0.89
CIITA-204ENST00000570546 NBR1Q14596 966 aa20.59■□□□□ 0.89
CIITA-204ENST00000570546 CCNB3Q8WWL7 1395 aa20.58■□□□□ 0.89
CIITA-204ENST00000570546 WDR43Q15061 677 aaKnown RBP eCLIP20.56■□□□□ 0.88
CIITA-204ENST00000570546 VPS8Q8N3P4 1428 aa20.55■□□□□ 0.88
CIITA-204ENST00000570546 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.55■□□□□ 0.88
CIITA-204ENST00000570546 SLC24A1O60721 1099 aa20.54■□□□□ 0.88
CIITA-204ENST00000570546 CHMP7Q8WUX9 453 aaPredicted RBP20.54■□□□□ 0.88
CIITA-204ENST00000570546 UPF2Q9HAU5 1272 aaKnown RBP20.52■□□□□ 0.88
CIITA-204ENST00000570546 SUPT16HQ9Y5B9 1047 aaKnown RBP20.51■□□□□ 0.87
CIITA-204ENST00000570546 FHAD1B1AJZ9 1412 aa20.47■□□□□ 0.87
CIITA-204ENST00000570546 WIZO95785 1651 aa20.46■□□□□ 0.87
CIITA-204ENST00000570546 ANP32EQ9BTT0 268 aa20.45■□□□□ 0.86
CIITA-204ENST00000570546 CARMIL1Q5VZK9 1371 aa20.42■□□□□ 0.86
CIITA-204ENST00000570546 CUX2O14529 1486 aa20.41■□□□□ 0.86
CIITA-204ENST00000570546 TOP2AP11388 1531 aaKnown RBP20.41■□□□□ 0.86
CIITA-204ENST00000570546 HSP90AA1P07900 732 aaKnown RBP20.41■□□□□ 0.86
CIITA-204ENST00000570546 PLEKHD1A6NEE1 506 aa20.4■□□□□ 0.86
CIITA-204ENST00000570546 KANK4Q5T7N3 995 aaPredicted RBP20.4■□□□□ 0.86
CIITA-204ENST00000570546 SETD5Q9C0A6 1442 aa20.4■□□□□ 0.86
CIITA-204ENST00000570546 CFDP1Q9UEE9 299 aaPredicted RBP20.39■□□□□ 0.86
CIITA-204ENST00000570546 STAG3Q9UJ98 1225 aa20.39■□□□□ 0.86
CIITA-204ENST00000570546 TIMELESSQ9UNS1 1208 aa20.38■□□□□ 0.85
CIITA-204ENST00000570546 SENP3-EIF4A1A0A087X0R7 540 aa20.35■□□□□ 0.85
CIITA-204ENST00000570546 NPM1P06748 294 aaKnown RBP eCLIP20.35■□□□□ 0.85
CIITA-204ENST00000570546 CARD11Q9BXL7 1154 aa20.35■□□□□ 0.85
CIITA-204ENST00000570546 PPP4R2Q9NY27 417 aa20.35■□□□□ 0.85
CIITA-204ENST00000570546 RGL3Q3MIN7 710 aa20.34■□□□□ 0.85
CIITA-204ENST00000570546 ANP32BQ92688 251 aaKnown RBP20.33■□□□□ 0.84
CIITA-204ENST00000570546 EIF5BO60841 1220 aaKnown RBP20.32■□□□□ 0.84
CIITA-204ENST00000570546 CCER2I3L3R5 266 aa20.32■□□□□ 0.84
CIITA-204ENST00000570546 ESF1Q9H501 851 aaKnown RBP20.31■□□□□ 0.84
CIITA-204ENST00000570546 ARHGAP35Q9NRY4 1499 aa20.31■□□□□ 0.84
CIITA-204ENST00000570546 DDRGK1Q96HY6 314 aa20.3■□□□□ 0.84
CIITA-204ENST00000570546 SMARCA2P51531 1590 aa20.28■□□□□ 0.84
CIITA-204ENST00000570546 RAB3GAP2Q9H2M9 1393 aa20.27■□□□□ 0.84
CIITA-204ENST00000570546 KCNH8Q96L42 1107 aa20.27■□□□□ 0.83
CIITA-204ENST00000570546 EIF4G1Q04637 1599 aaKnown RBP20.25■□□□□ 0.83
CIITA-204ENST00000570546 KNSTRNQ9Y448 316 aa20.23■□□□□ 0.83
CIITA-204ENST00000570546 CDCA8Q53HL2 280 aa20.2■□□□□ 0.82
CIITA-204ENST00000570546 HSPA5P11021 654 aaKnown RBP20.2■□□□□ 0.82
CIITA-204ENST00000570546 ARXQ96QS3 562 aa20.19■□□□□ 0.82
CIITA-204ENST00000570546 B4GALNT3Q6L9W6 998 aa20.18■□□□□ 0.82
CIITA-204ENST00000570546 RAPGEF2Q9Y4G8 1499 aa20.17■□□□□ 0.82
CIITA-204ENST00000570546 BECN1Q14457 450 aa20.16■□□□□ 0.82
CIITA-204ENST00000570546 NOP58Q9Y2X3 529 aaKnown RBP20.13■□□□□ 0.81
CIITA-204ENST00000570546 RUSC2Q8N2Y8 1516 aa20.13■□□□□ 0.81
CIITA-204ENST00000570546 SMARCA4P51532 1647 aa20.12■□□□□ 0.81
CIITA-204ENST00000570546 MYH16Q9H6N6 1097 aa20.11■□□□□ 0.81
CIITA-204ENST00000570546 CC2D1BQ5T0F9 858 aaKnown RBP20.11■□□□□ 0.81
CIITA-204ENST00000570546 RBM19Q9Y4C8 960 aaKnown RBP20.11■□□□□ 0.81
CIITA-204ENST00000570546 CFAP53Q96M91 514 aa20.1■□□□□ 0.81
CIITA-204ENST00000570546 DCAF11Q8TEB1 546 aa20.09■□□□□ 0.81
CIITA-204ENST00000570546 FMN1Q68DA7 1419 aa20.08■□□□□ 0.81
CIITA-204ENST00000570546 PPM1GO15355 546 aaPredicted RBP20.08■□□□□ 0.8
CIITA-204ENST00000570546 PPP1R15AO75807 674 aaPredicted RBP20.08■□□□□ 0.8
CIITA-204ENST00000570546 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
CIITA-204ENST00000570546 DHX57Q6P158 1386 aaKnown RBP20.07■□□□□ 0.8
CIITA-204ENST00000570546 FOXD1Q16676 465 aa20.06■□□□□ 0.8
CIITA-204ENST00000570546 PLPPR3Q6T4P5 718 aa20.05■□□□□ 0.8
CIITA-204ENST00000570546 LAS1LQ9Y4W2 734 aaKnown RBP20.04■□□□□ 0.8
CIITA-204ENST00000570546 MPHOSPH9Q99550 1183 aa20.03■□□□□ 0.8
CIITA-204ENST00000570546 TMF1P82094 1093 aa20.02■□□□□ 0.79
CIITA-204ENST00000570546 NEUROD2Q15784 382 aa20■□□□□ 0.79
CIITA-204ENST00000570546 TSHZ2Q9NRE2 1034 aa20■□□□□ 0.79
CIITA-204ENST00000570546 ERICH6BQ5W0A0 696 aa20■□□□□ 0.79
CIITA-204ENST00000570546 RGS3P49796 1198 aa20■□□□□ 0.79
CIITA-204ENST00000570546 PKD2Q13563 968 aa20■□□□□ 0.79
CIITA-204ENST00000570546 FHOD3Q2V2M9 1422 aa19.99■□□□□ 0.79
CIITA-204ENST00000570546 ERCC6Q03468 1493 aa19.99■□□□□ 0.79
CIITA-204ENST00000570546 FTSJ3Q8IY81 847 aaKnown RBP19.99■□□□□ 0.79
CIITA-204ENST00000570546 ATAD2BQ9ULI0 1458 aa19.99■□□□□ 0.79
CIITA-204ENST00000570546 GLIPR1L2Q4G1C9 344 aa19.96■□□□□ 0.79
CIITA-204ENST00000570546 TDRD9Q8NDG6 1382 aaKnown RBP19.95■□□□□ 0.78
CIITA-204ENST00000570546 FRAT1Q92837 279 aaPredicted RBP19.94■□□□□ 0.78
CIITA-204ENST00000570546 KTN1Q86UP2 1357 aaKnown RBP19.92■□□□□ 0.78
CIITA-204ENST00000570546 TNNT2P45379 298 aaPredicted RBP19.92■□□□□ 0.78
CIITA-204ENST00000570546 MAPK8IP3Q9UPT6 1336 aa19.91■□□□□ 0.78
CIITA-204ENST00000570546 NUDCQ9Y266 331 aa19.89■□□□□ 0.78
CIITA-204ENST00000570546 L3MBTL2Q969R5 705 aa19.89■□□□□ 0.77
CIITA-204ENST00000570546 CADPSQ9ULU8 1353 aa19.89■□□□□ 0.77
CIITA-204ENST00000570546 GOLGA6L22H0YM25 854 aa19.89■□□□□ 0.77
CIITA-204ENST00000570546 PDS5BQ9NTI5 1447 aa19.88■□□□□ 0.77
CIITA-204ENST00000570546 TRIM44Q96DX7 344 aaPredicted RBP19.87■□□□□ 0.77
CIITA-204ENST00000570546 RALBP1Q15311 655 aa19.86■□□□□ 0.77
CIITA-204ENST00000570546 ROCK2O75116 1388 aaKnown RBP19.86■□□□□ 0.77
CIITA-204ENST00000570546 ANKRD30AQ9BXX3 1397 aa19.85■□□□□ 0.77
CIITA-204ENST00000570546 NUP155O75694 1391 aa19.85■□□□□ 0.77
CIITA-204ENST00000570546 KANK1Q14678 1352 aa19.85■□□□□ 0.77
CIITA-204ENST00000570546 RCAN3Q9UKA8 241 aa19.84■□□□□ 0.77
CIITA-204ENST00000570546 DEKP35659 375 aaKnown RBP19.84■□□□□ 0.77
CIITA-204ENST00000570546 CARMIL2Q6F5E8 1435 aa19.83■□□□□ 0.76
CIITA-204ENST00000570546 MS4A1P11836 297 aa19.82■□□□□ 0.76
CIITA-204ENST00000570546 POGKQ9P215 609 aa19.81■□□□□ 0.76
CIITA-204ENST00000570546 CASC1Q6TDU7 716 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms