RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 ASTLQ6HA08 431 aaPredicted RBP6.62□□□□□ -1.35
VPS35-209ENST00000568642 MAMSTRQ6ZN01 415 aa6.61□□□□□ -1.35
VPS35-209ENST00000568642 CREBZFQ9NS37 354 aa6.61□□□□□ -1.35
VPS35-209ENST00000568642 SLC39A7Q92504 469 aa6.6□□□□□ -1.35
VPS35-209ENST00000568642 ATMINO43313 823 aaPredicted RBP6.59□□□□□ -1.35
VPS35-209ENST00000568642 C7P10643 843 aa6.59□□□□□ -1.35
VPS35-209ENST00000568642 SCUBE2Q9NQ36 999 aa6.58□□□□□ -1.36
VPS35-209ENST00000568642 RTN4Q9NQC3 1192 aaKnown RBP6.58□□□□□ -1.36
VPS35-209ENST00000568642 MS4A3Q96HJ5 214 aa6.56□□□□□ -1.36
VPS35-209ENST00000568642 MMRN1Q13201 1228 aa6.55□□□□□ -1.36
VPS35-209ENST00000568642 POTEFA5A3E0 1075 aa6.54□□□□□ -1.36
VPS35-209ENST00000568642 PAK3O75914 559 aaPredicted RBP6.53□□□□□ -1.36
VPS35-209ENST00000568642 ATN1P54259 1190 aaPredicted RBP6.5□□□□□ -1.37
VPS35-209ENST00000568642 SPNS2Q8IVW8 549 aa6.5□□□□□ -1.37
VPS35-209ENST00000568642 ST18O60284 1047 aa6.46□□□□□ -1.38
VPS35-209ENST00000568642 MNX1P50219 401 aaPredicted RBP6.44□□□□□ -1.38
VPS35-209ENST00000568642 ABCC9O60706 1549 aa6.42□□□□□ -1.38
VPS35-209ENST00000568642 TRPC6Q9Y210 931 aa6.42□□□□□ -1.38
VPS35-209ENST00000568642 COLQQ9Y215 455 aaPredicted RBP6.42□□□□□ -1.38
VPS35-209ENST00000568642 BMP2KQ9NSY1 1161 aaPredicted RBP6.41□□□□□ -1.38
VPS35-209ENST00000568642 NPM1P06748 294 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS35-209ENST00000568642 AMER1Q5JTC6 1135 aaPredicted RBP6.37□□□□□ -1.39
VPS35-209ENST00000568642 STAG3Q9UJ98 1225 aa6.37□□□□□ -1.39
VPS35-209ENST00000568642 SLAIN1Q8ND83 568 aa6.36□□□□□ -1.39
VPS35-209ENST00000568642 SEC24BO95487 1268 aa6.33□□□□□ -1.4
VPS35-209ENST00000568642 TSPYL2Q9H2G4 693 aaPredicted RBP6.33□□□□□ -1.4
VPS35-209ENST00000568642 CCDC61Q9Y6R9 512 aa6.33□□□□□ -1.4
VPS35-209ENST00000568642 KIF12Q96FN5 646 aa6.32□□□□□ -1.4
VPS35-209ENST00000568642 MARVELD3Q96A59 401 aa6.31□□□□□ -1.4
VPS35-209ENST00000568642 TIE1P35590 1138 aa6.3□□□□□ -1.4
VPS35-209ENST00000568642 TTLL13PA6NNM8 815 aa6.28□□□□□ -1.4
VPS35-209ENST00000568642 MAP3K13O43283 966 aa6.27□□□□□ -1.41
VPS35-209ENST00000568642 TMEM121BQ9BXQ6 578 aaPredicted RBP6.27□□□□□ -1.41
VPS35-209ENST00000568642 KRTAP3-3Q9BYR6 98 aa6.26□□□□□ -1.41
VPS35-209ENST00000568642 KRTAP3-2Q9BYR7 98 aa6.26□□□□□ -1.41
VPS35-209ENST00000568642 TRIM35Q9UPQ4 493 aa6.24□□□□□ -1.41
VPS35-209ENST00000568642 POTEB3A0JP26 581 aa6.23□□□□□ -1.41
VPS35-209ENST00000568642 POTEBQ6S5H4 581 aa6.23□□□□□ -1.41
VPS35-209ENST00000568642 IER5LQ5T953 404 aa6.22□□□□□ -1.41
VPS35-209ENST00000568642 TRIM41Q8WV44 630 aa6.19□□□□□ -1.42
VPS35-209ENST00000568642 EMP3P54852 163 aa6.17□□□□□ -1.42
VPS35-209ENST00000568642 HS3ST6Q96QI5 342 aa6.17□□□□□ -1.42
VPS35-209ENST00000568642 SPDYE4A6NLX3 237 aa6.16□□□□□ -1.42
VPS35-209ENST00000568642 SNPHO15079 494 aa6.16□□□□□ -1.42
VPS35-209ENST00000568642 PRKCSHP14314 528 aaPredicted RBP6.16□□□□□ -1.42
VPS35-209ENST00000568642 FAM205CA6NFA0 338 aa6.14□□□□□ -1.43
VPS35-209ENST00000568642 PLCG2P16885 1265 aa6.14□□□□□ -1.43
VPS35-209ENST00000568642 IRX5P78411 483 aaPredicted RBP6.14□□□□□ -1.43
VPS35-209ENST00000568642 RASEFQ8IZ41 740 aa6.14□□□□□ -1.43
VPS35-209ENST00000568642 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.1□□□□□ -1.43
VPS35-209ENST00000568642 PCDHB13Q9Y5F0 798 aa6.1□□□□□ -1.43
VPS35-209ENST00000568642 RNF166Q96A37 237 aaPredicted RBP6.09□□□□□ -1.43
VPS35-209ENST00000568642 DAXXQ9UER7 740 aaPredicted RBP6.09□□□□□ -1.43
VPS35-209ENST00000568642 IFNL1Q8IU54 200 aa6.08□□□□□ -1.44
VPS35-209ENST00000568642 TMEM106CQ9BVX2 250 aa6.08□□□□□ -1.44
VPS35-209ENST00000568642 SGIP1Q9BQI5 828 aa6.06□□□□□ -1.44
VPS35-209ENST00000568642 OCEL1Q9H607 264 aa6.06□□□□□ -1.44
VPS35-209ENST00000568642 ILDR1Q86SU0 546 aaPredicted RBP6.02□□□□□ -1.45
VPS35-209ENST00000568642 TAOK2Q9UL54 1235 aa5.99□□□□□ -1.45
VPS35-209ENST00000568642 MYT1LQ9UL68 1186 aa5.99□□□□□ -1.45
VPS35-209ENST00000568642 NISCHQ9Y2I1 1504 aa5.99□□□□□ -1.45
VPS35-209ENST00000568642 PDCD7Q8N8D1 485 aaKnown RBP5.98□□□□□ -1.45
VPS35-209ENST00000568642 C3orf67Q6ZVT6 689 aa5.97□□□□□ -1.45
VPS35-209ENST00000568642 TIMELESSQ9UNS1 1208 aa5.95□□□□□ -1.46
VPS35-209ENST00000568642 HOXB3P14651 431 aaPredicted RBP5.94□□□□□ -1.46
VPS35-209ENST00000568642 PROM2Q8N271 834 aa5.94□□□□□ -1.46
VPS35-209ENST00000568642 MIER1Q8N108 512 aa5.93□□□□□ -1.46
VPS35-209ENST00000568642 NUBP1P53384 320 aa5.92□□□□□ -1.46
VPS35-209ENST00000568642 PLCB2Q00722 1185 aa5.92□□□□□ -1.46
VPS35-209ENST00000568642 ERBB3P21860 1342 aa5.92□□□□□ -1.46
VPS35-209ENST00000568642 HOXB1P14653 301 aaPredicted RBP5.91□□□□□ -1.46
VPS35-209ENST00000568642 PLEKHG5O94827 1062 aa5.89□□□□□ -1.47
VPS35-209ENST00000568642 CUX2O14529 1486 aa5.89□□□□□ -1.47
VPS35-209ENST00000568642 VARS2Q5ST30 1063 aaKnown RBP5.88□□□□□ -1.47
VPS35-209ENST00000568642 L3MBTL3Q96JM7 780 aaPredicted RBP5.88□□□□□ -1.47
VPS35-209ENST00000568642 ARXQ96QS3 562 aa5.87□□□□□ -1.47
VPS35-209ENST00000568642 CECR2Q9BXF3 1484 aa5.87□□□□□ -1.47
VPS35-209ENST00000568642 PCDHB8Q9UN66 801 aa5.86□□□□□ -1.47
VPS35-209ENST00000568642 BCANQ96GW7 911 aa5.85□□□□□ -1.47
VPS35-209ENST00000568642 PLA2G2EQ9NZK7 142 aa5.85□□□□□ -1.47
VPS35-209ENST00000568642 ZNF710Q8N1W2 664 aa5.84□□□□□ -1.47
VPS35-209ENST00000568642 PYGBP11216 843 aa5.83□□□□□ -1.48
VPS35-209ENST00000568642 ZNF687Q8N1G0 1237 aa5.83□□□□□ -1.48
VPS35-209ENST00000568642 FAM212AQ96EL1 285 aa5.83□□□□□ -1.48
VPS35-209ENST00000568642 PTGER2P43116 358 aa5.82□□□□□ -1.48
VPS35-209ENST00000568642 TPRNQ4KMQ1 711 aa5.82□□□□□ -1.48
VPS35-209ENST00000568642 FKBP8Q14318 412 aa5.81□□□□□ -1.48
VPS35-209ENST00000568642 DPY19L2Q6NUT2 758 aa5.81□□□□□ -1.48
VPS35-209ENST00000568642 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.81□□□□□ -1.481e-8■■□□□ 12.1
VPS35-209ENST00000568642 TULP1O00294 542 aaPredicted RBP5.8□□□□□ -1.48
VPS35-209ENST00000568642 MKRN3Q13064 507 aaKnown RBP5.8□□□□□ -1.48
VPS35-209ENST00000568642 ANKRD13DQ6ZTN6 518 aa5.8□□□□□ -1.48
VPS35-209ENST00000568642 PLCD3Q8N3E9 789 aa5.8□□□□□ -1.48
VPS35-209ENST00000568642 CC2D2AQ9P2K1 1620 aa5.79□□□□□ -1.48
VPS35-209ENST00000568642 DOK7Q18PE1 504 aa5.79□□□□□ -1.48
VPS35-209ENST00000568642 RB1CC1Q8TDY2 1594 aa5.77□□□□□ -1.49
VPS35-209ENST00000568642 GOLGA2Q08379 1002 aa5.77□□□□□ -1.49
VPS35-209ENST00000568642 KDM2AQ9Y2K7 1162 aa5.77□□□□□ -1.49
VPS35-209ENST00000568642 UNC13AQ9UPW8 1703 aa5.76□□□□□ -1.49
VPS35-209ENST00000568642 BOLA1Q9Y3E2 137 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms