RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 PRG4Q92954 1404 aaPredicted RBP21.66■■□□□ 1.06
CLK3-222ENST00000568232 FHAD1B1AJZ9 1412 aa21.63■■□□□ 1.05
CLK3-222ENST00000568232 ABCC10Q5T3U5 1492 aa21.63■■□□□ 1.05
CLK3-222ENST00000568232 WRNQ14191 1432 aaPredicted RBP eCLIP21.62■■□□□ 1.05
CLK3-222ENST00000568232 JPH4Q96JJ6 628 aa21.61■■□□□ 1.05
CLK3-222ENST00000568232 NPM1P06748 294 aaKnown RBP eCLIP21.58■■□□□ 1.05
CLK3-222ENST00000568232 DIP2BQ9P265 1576 aa21.53■■□□□ 1.04
CLK3-222ENST00000568232 KDM6BO15054 1643 aa21.52■■□□□ 1.04
CLK3-222ENST00000568232 MAPKBP1O60336 1514 aa21.52■■□□□ 1.04
CLK3-222ENST00000568232 ERICH3Q5RHP9 1530 aa21.5■■□□□ 1.03
CLK3-222ENST00000568232 ADCY10Q96PN6 1610 aa21.47■■□□□ 1.03
CLK3-222ENST00000568232 PPP6R1Q9UPN7 881 aa21.45■■□□□ 1.02
CLK3-222ENST00000568232 TOP2BQ02880 1626 aa21.44■■□□□ 1.02
CLK3-222ENST00000568232 BIVM-ERCC5R4GMW8 1640 aa21.43■■□□□ 1.02
CLK3-222ENST00000568232 TSPOAP1O95153 1857 aa21.42■■□□□ 1.02
CLK3-222ENST00000568232 RUSC2Q8N2Y8 1516 aa21.42■■□□□ 1.02
CLK3-222ENST00000568232 ADRA2BP18089 450 aa21.31■■□□□ 1
CLK3-222ENST00000568232 ADGRL1O94910 1474 aa21.31■■□□□ 1
CLK3-222ENST00000568232 SUPT5HO00267 1087 aaKnown RBP21.3■■□□□ 1
CLK3-222ENST00000568232 TTBK1Q5TCY1 1321 aaPredicted RBP21.29■■□□□ 1
CLK3-222ENST00000568232 KIAA0586Q9BVV6 1533 aa21.26■□□□□ 0.99
CLK3-222ENST00000568232 PTPRGP23470 1445 aa21.22■□□□□ 0.99
CLK3-222ENST00000568232 HECW2Q9P2P5 1572 aa21.22■□□□□ 0.99
CLK3-222ENST00000568232 COL17A1Q9UMD9 1497 aaPredicted RBP21.2■□□□□ 0.98
CLK3-222ENST00000568232 PPRC1Q5VV67 1664 aaKnown RBP21.2■□□□□ 0.98
CLK3-222ENST00000568232 ASXL2Q76L83 1435 aa21.2■□□□□ 0.98
CLK3-222ENST00000568232 PIAS4Q8N2W9 510 aaPredicted RBP21.18■□□□□ 0.98
CLK3-222ENST00000568232 IGF1RP08069 1367 aa21.17■□□□□ 0.98
CLK3-222ENST00000568232 ABCC2Q92887 1545 aa21.17■□□□□ 0.98
CLK3-222ENST00000568232 GLI2P10070 1586 aa21.14■□□□□ 0.98
CLK3-222ENST00000568232 PLB1Q6P1J6 1458 aa21.14■□□□□ 0.98
CLK3-222ENST00000568232 TNIKQ9UKE5 1360 aa21.11■□□□□ 0.97
CLK3-222ENST00000568232 MSH5O43196 834 aa21.1■□□□□ 0.97
CLK3-222ENST00000568232 CUL7Q14999 1698 aa21.07■□□□□ 0.96
CLK3-222ENST00000568232 CARMIL2Q6F5E8 1435 aa21.06■□□□□ 0.96
CLK3-222ENST00000568232 EPRSP07814 1512 aaKnown RBP21.04■□□□□ 0.96
CLK3-222ENST00000568232 UHRF1BP1LA0JNW5 1464 aa21.03■□□□□ 0.96
CLK3-222ENST00000568232 KIF27Q86VH2 1401 aa21.03■□□□□ 0.96
CLK3-222ENST00000568232 UACAQ9BZF9 1416 aa21.03■□□□□ 0.96
CLK3-222ENST00000568232 MAP3K4Q9Y6R4 1608 aa21.01■□□□□ 0.95
CLK3-222ENST00000568232 TEX14Q8IWB6 1497 aa21■□□□□ 0.95
CLK3-222ENST00000568232 CARMIL1Q5VZK9 1371 aa20.99■□□□□ 0.95
CLK3-222ENST00000568232 FBXO41Q8TF61 875 aa20.99■□□□□ 0.95
CLK3-222ENST00000568232 KDM5BQ9UGL1 1544 aa20.96■□□□□ 0.95
CLK3-222ENST00000568232 DISP1Q96F81 1524 aa20.94■□□□□ 0.94
CLK3-222ENST00000568232 IQGAP2Q13576 1575 aa20.94■□□□□ 0.94
CLK3-222ENST00000568232 ZCCHC11Q5TAX3 1644 aaKnown RBP20.91■□□□□ 0.94
CLK3-222ENST00000568232 WDR7Q9Y4E6 1490 aa20.85■□□□□ 0.93
CLK3-222ENST00000568232 KCNH8Q96L42 1107 aa20.83■□□□□ 0.93
CLK3-222ENST00000568232 CD109Q6YHK3 1445 aa20.82■□□□□ 0.92
CLK3-222ENST00000568232 MAGI3Q5TCQ9 1506 aa20.79■□□□□ 0.92
CLK3-222ENST00000568232 UGGT2Q9NYU1 1516 aa20.79■□□□□ 0.92
CLK3-222ENST00000568232 KIF21BO75037 1637 aa20.79■□□□□ 0.92
CLK3-222ENST00000568232 KIAA0556O60303 1618 aa20.77■□□□□ 0.92
CLK3-222ENST00000568232 PTPRMP28827 1452 aa20.72■□□□□ 0.91
CLK3-222ENST00000568232 CFAP43Q8NDM7 1665 aa20.72■□□□□ 0.91
CLK3-222ENST00000568232 RAPGEF2Q9Y4G8 1499 aa20.69■□□□□ 0.9
CLK3-222ENST00000568232 ARAP3Q8WWN8 1544 aa20.65■□□□□ 0.9
CLK3-222ENST00000568232 ADAMTSL3P82987 1691 aa20.64■□□□□ 0.9
CLK3-222ENST00000568232 ABCA8O94911 1581 aa20.63■□□□□ 0.89
CLK3-222ENST00000568232 ARID3CA6NKF2 412 aa20.62■□□□□ 0.89
CLK3-222ENST00000568232 LMTK3Q96Q04 1460 aa20.62■□□□□ 0.89
CLK3-222ENST00000568232 RAPGEF3O95398 923 aa20.61■□□□□ 0.89
CLK3-222ENST00000568232 PCF11O94913 1555 aaKnown RBP20.59■□□□□ 0.89
CLK3-222ENST00000568232 ARID4BQ4LE39 1312 aaPredicted RBP20.57■□□□□ 0.88
CLK3-222ENST00000568232 HSPA2P54652 639 aa20.55■□□□□ 0.88
CLK3-222ENST00000568232 MADDQ8WXG6 1647 aa20.54■□□□□ 0.88
CLK3-222ENST00000568232 POTEDQ86YR6 584 aa20.54■□□□□ 0.88
CLK3-222ENST00000568232 GOLGA3Q08378 1498 aa20.54■□□□□ 0.88
CLK3-222ENST00000568232 BCORL1Q5H9F3 1711 aa20.53■□□□□ 0.88
CLK3-222ENST00000568232 ATP10BO94823 1461 aa20.5■□□□□ 0.87
CLK3-222ENST00000568232 PHLDB1Q86UU1 1377 aa20.5■□□□□ 0.87
CLK3-222ENST00000568232 ILDR2Q71H61 639 aa20.5■□□□□ 0.87
CLK3-222ENST00000568232 CERKQ8TCT0 537 aa20.5■□□□□ 0.87
CLK3-222ENST00000568232 CTTNBP2Q8WZ74 1663 aa20.49■□□□□ 0.87
CLK3-222ENST00000568232 P3H3Q8IVL6 736 aa20.48■□□□□ 0.87
CLK3-222ENST00000568232 ABCA9Q8IUA7 1624 aa20.47■□□□□ 0.87
CLK3-222ENST00000568232 FRMPD1Q5SYB0 1578 aa20.46■□□□□ 0.87
CLK3-222ENST00000568232 RIMS1Q86UR5 1692 aaKnown RBP20.44■□□□□ 0.86
CLK3-222ENST00000568232 NEO1Q92859 1461 aa20.43■□□□□ 0.86
CLK3-222ENST00000568232 DISP3Q9P2K9 1392 aa20.42■□□□□ 0.86
CLK3-222ENST00000568232 SOCS7O14512 581 aa20.41■□□□□ 0.86
CLK3-222ENST00000568232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.38■□□□□ 0.85
CLK3-222ENST00000568232 HNRNPUL2Q1KMD3 747 aaKnown RBP20.38■□□□□ 0.85
CLK3-222ENST00000568232 FAM9AQ8IZU1 332 aaPredicted RBP20.37■□□□□ 0.85
CLK3-222ENST00000568232 ARHGEF40Q8TER5 1519 aa20.35■□□□□ 0.85
CLK3-222ENST00000568232 DENND4BO75064 1496 aaPredicted RBP20.32■□□□□ 0.84
CLK3-222ENST00000568232 PRXQ9BXM0 1461 aa20.32■□□□□ 0.84
CLK3-222ENST00000568232 MLECQ14165 292 aa20.32■□□□□ 0.84
CLK3-222ENST00000568232 SIGLEC1Q9BZZ2 1709 aa20.3■□□□□ 0.84
CLK3-222ENST00000568232 POGZQ7Z3K3 1410 aa20.28■□□□□ 0.84
CLK3-222ENST00000568232 AKNAQ7Z591 1439 aa20.28■□□□□ 0.84
CLK3-222ENST00000568232 YEATS2Q9ULM3 1422 aa20.28■□□□□ 0.84
CLK3-222ENST00000568232 FANCAO15360 1455 aa20.28■□□□□ 0.84
CLK3-222ENST00000568232 FHOD3Q2V2M9 1422 aa20.27■□□□□ 0.84
CLK3-222ENST00000568232 RICTORQ6R327 1708 aa20.27■□□□□ 0.84
CLK3-222ENST00000568232 RAPGEF6Q8TEU7 1601 aa20.27■□□□□ 0.83
CLK3-222ENST00000568232 NUP153P49790 1475 aaKnown RBP20.24■□□□□ 0.83
CLK3-222ENST00000568232 ZFYVE16Q7Z3T8 1539 aa20.22■□□□□ 0.83
CLK3-222ENST00000568232 CEBPAP49715 358 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms