RNA–Protein interactions for RNA: ENST00000568108.1

PTPN9-205, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

TSL 2

Gene PTPN9, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-205ENST00000568108 ERICH3Q5RHP9 1530 aa11.24□□□□□ -0.61
PTPN9-205ENST00000568108 PRG4Q92954 1404 aaPredicted RBP11.23□□□□□ -0.61
PTPN9-205ENST00000568108 SHROOM2Q13796 1616 aa11.23□□□□□ -0.61
PTPN9-205ENST00000568108 NPM1P06748 294 aaKnown RBP eCLIP11.19□□□□□ -0.62
PTPN9-205ENST00000568108 FAM69CQ0P6D2 419 aa11.17□□□□□ -0.62
PTPN9-205ENST00000568108 IGF1RP08069 1367 aa11.13□□□□□ -0.63
PTPN9-205ENST00000568108 KIF13AQ9H1H9 1805 aa11.12□□□□□ -0.63
PTPN9-205ENST00000568108 ABCC10Q5T3U5 1492 aa11.12□□□□□ -0.63
PTPN9-205ENST00000568108 RUSC2Q8N2Y8 1516 aa11.11□□□□□ -0.63
PTPN9-205ENST00000568108 KIAA0586Q9BVV6 1533 aa11.1□□□□□ -0.63
PTPN9-205ENST00000568108 KIF27Q86VH2 1401 aa11.09□□□□□ -0.63
PTPN9-205ENST00000568108 MAPKBP1O60336 1514 aa11.08□□□□□ -0.64
PTPN9-205ENST00000568108 TTBK1Q5TCY1 1321 aaPredicted RBP11.08□□□□□ -0.64
PTPN9-205ENST00000568108 ADCY10Q96PN6 1610 aa11.06□□□□□ -0.64
PTPN9-205ENST00000568108 PTPRGP23470 1445 aa11.05□□□□□ -0.64
PTPN9-205ENST00000568108 CARMIL1Q5VZK9 1371 aa11.04□□□□□ -0.64
PTPN9-205ENST00000568108 DIP2BQ9P265 1576 aa11.04□□□□□ -0.64
PTPN9-205ENST00000568108 CUL7Q14999 1698 aa11.03□□□□□ -0.64
PTPN9-205ENST00000568108 TNIKQ9UKE5 1360 aa11.02□□□□□ -0.65
PTPN9-205ENST00000568108 CARMIL2Q6F5E8 1435 aa11.01□□□□□ -0.65
PTPN9-205ENST00000568108 KDM4FA0A1W2PPD8 638 aa11.01□□□□□ -0.65
PTPN9-205ENST00000568108 KDM6BO15054 1643 aa11□□□□□ -0.65
PTPN9-205ENST00000568108 TSPOAP1O95153 1857 aa10.99□□□□□ -0.65
PTPN9-205ENST00000568108 ABCC2Q92887 1545 aa10.97□□□□□ -0.65
PTPN9-205ENST00000568108 PLB1Q6P1J6 1458 aa10.96□□□□□ -0.65
PTPN9-205ENST00000568108 ASXL2Q76L83 1435 aa10.96□□□□□ -0.65
PTPN9-205ENST00000568108 UACAQ9BZF9 1416 aa10.95□□□□□ -0.66
PTPN9-205ENST00000568108 IQGAP2Q13576 1575 aa10.94□□□□□ -0.66
PTPN9-205ENST00000568108 UHRF1BP1LA0JNW5 1464 aa10.93□□□□□ -0.66
PTPN9-205ENST00000568108 ADRA2BP18089 450 aa10.93□□□□□ -0.66
PTPN9-205ENST00000568108 DISP1Q96F81 1524 aa10.92□□□□□ -0.66
PTPN9-205ENST00000568108 GLI2P10070 1586 aa10.91□□□□□ -0.66
PTPN9-205ENST00000568108 RAPGEF2Q9Y4G8 1499 aa10.91□□□□□ -0.66
PTPN9-205ENST00000568108 FOXD1Q16676 465 aa10.9□□□□□ -0.66
PTPN9-205ENST00000568108 EPRSP07814 1512 aaKnown RBP10.89□□□□□ -0.67
PTPN9-205ENST00000568108 KDM5BQ9UGL1 1544 aa10.89□□□□□ -0.67
PTPN9-205ENST00000568108 UGGT2Q9NYU1 1516 aa10.88□□□□□ -0.67
PTPN9-205ENST00000568108 COL17A1Q9UMD9 1497 aaPredicted RBP10.87□□□□□ -0.67
PTPN9-205ENST00000568108 PPRC1Q5VV67 1664 aaKnown RBP10.87□□□□□ -0.67
PTPN9-205ENST00000568108 PPP6R1Q9UPN7 881 aa10.85□□□□□ -0.67
PTPN9-205ENST00000568108 TEX14Q8IWB6 1497 aa10.85□□□□□ -0.67
PTPN9-205ENST00000568108 KCNH8Q96L42 1107 aa10.84□□□□□ -0.67
PTPN9-205ENST00000568108 ADGRL1O94910 1474 aa10.84□□□□□ -0.67
PTPN9-205ENST00000568108 KIAA0556O60303 1618 aa10.84□□□□□ -0.67
PTPN9-205ENST00000568108 ZCCHC11Q5TAX3 1644 aaKnown RBP10.84□□□□□ -0.67
PTPN9-205ENST00000568108 MAP3K4Q9Y6R4 1608 aa10.83□□□□□ -0.68
PTPN9-205ENST00000568108 WDR7Q9Y4E6 1490 aa10.81□□□□□ -0.68
PTPN9-205ENST00000568108 ILDR1Q86SU0 546 aaPredicted RBP10.81□□□□□ -0.68
PTPN9-205ENST00000568108 GOLGA3Q08378 1498 aa10.81□□□□□ -0.68
PTPN9-205ENST00000568108 FAM9AQ8IZU1 332 aaPredicted RBP10.8□□□□□ -0.68
PTPN9-205ENST00000568108 CD109Q6YHK3 1445 aa10.8□□□□□ -0.68
PTPN9-205ENST00000568108 MAGI3Q5TCQ9 1506 aa10.77□□□□□ -0.69
PTPN9-205ENST00000568108 ABCA8O94911 1581 aa10.77□□□□□ -0.69
PTPN9-205ENST00000568108 ARID3CA6NKF2 412 aa10.76□□□□□ -0.69
PTPN9-205ENST00000568108 P3H3Q8IVL6 736 aa10.76□□□□□ -0.69
PTPN9-205ENST00000568108 CTTNBP2Q8WZ74 1663 aa10.76□□□□□ -0.69
PTPN9-205ENST00000568108 PRXQ9BXM0 1461 aa10.75□□□□□ -0.69
PTPN9-205ENST00000568108 CFAP43Q8NDM7 1665 aa10.73□□□□□ -0.69
PTPN9-205ENST00000568108 KCNA4P22459 653 aa10.72□□□□□ -0.69
PTPN9-205ENST00000568108 HECW2Q9P2P5 1572 aa10.72□□□□□ -0.69
PTPN9-205ENST00000568108 ATP10BO94823 1461 aa10.71□□□□□ -0.69
PTPN9-205ENST00000568108 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.7□□□□□ -0.7
PTPN9-205ENST00000568108 HNRNPUL2Q1KMD3 747 aaKnown RBP10.7□□□□□ -0.7
PTPN9-205ENST00000568108 CSRNP3Q8WYN3 585 aa10.7□□□□□ -0.7
PTPN9-205ENST00000568108 ARAP3Q8WWN8 1544 aa10.68□□□□□ -0.7
PTPN9-205ENST00000568108 PHLDB1Q86UU1 1377 aa10.68□□□□□ -0.7
PTPN9-205ENST00000568108 RAPGEF3O95398 923 aa10.68□□□□□ -0.7
PTPN9-205ENST00000568108 RANGAP1P46060 587 aaPredicted RBP10.66□□□□□ -0.7
PTPN9-205ENST00000568108 KIF21BO75037 1637 aa10.65□□□□□ -0.7
PTPN9-205ENST00000568108 ARID4BQ4LE39 1312 aaPredicted RBP10.63□□□□□ -0.71
PTPN9-205ENST00000568108 ABCA9Q8IUA7 1624 aa10.63□□□□□ -0.71
PTPN9-205ENST00000568108 PLEKHD1A6NEE1 506 aa10.63□□□□□ -0.71
PTPN9-205ENST00000568108 RAPGEF6Q8TEU7 1601 aa10.62□□□□□ -0.71
PTPN9-205ENST00000568108 NEO1Q92859 1461 aa10.61□□□□□ -0.71
PTPN9-205ENST00000568108 SAMD9Q5K651 1589 aa10.61□□□□□ -0.71
PTPN9-205ENST00000568108 PTPRMP28827 1452 aa10.61□□□□□ -0.71
PTPN9-205ENST00000568108 NUP153P49790 1475 aaKnown RBP10.59□□□□□ -0.71
PTPN9-205ENST00000568108 FHOD3Q2V2M9 1422 aa10.58□□□□□ -0.72
PTPN9-205ENST00000568108 ADAMTSL3P82987 1691 aa10.58□□□□□ -0.72
PTPN9-205ENST00000568108 FBXO41Q8TF61 875 aa10.58□□□□□ -0.72
PTPN9-205ENST00000568108 EEA1Q15075 1411 aa10.58□□□□□ -0.72
PTPN9-205ENST00000568108 DENND4BO75064 1496 aaPredicted RBP10.56□□□□□ -0.72
PTPN9-205ENST00000568108 EHMT2Q96KQ7 1210 aa10.56□□□□□ -0.72
PTPN9-205ENST00000568108 AKNAQ7Z591 1439 aa10.56□□□□□ -0.72
PTPN9-205ENST00000568108 FRMPD1Q5SYB0 1578 aa10.55□□□□□ -0.72
PTPN9-205ENST00000568108 BCORL1Q5H9F3 1711 aa10.54□□□□□ -0.72
PTPN9-205ENST00000568108 FANCAO15360 1455 aa10.54□□□□□ -0.72
PTPN9-205ENST00000568108 MADDQ8WXG6 1647 aa10.52□□□□□ -0.73
PTPN9-205ENST00000568108 ATP1B4Q9UN42 357 aaPredicted RBP10.52□□□□□ -0.73
PTPN9-205ENST00000568108 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.52□□□□□ -0.73
PTPN9-205ENST00000568108 POGZQ7Z3K3 1410 aa10.51□□□□□ -0.73
PTPN9-205ENST00000568108 HSPA2P54652 639 aa10.51□□□□□ -0.73
PTPN9-205ENST00000568108 MLECQ14165 292 aa10.51□□□□□ -0.73
PTPN9-205ENST00000568108 PCF11O94913 1555 aaKnown RBP10.51□□□□□ -0.73
PTPN9-205ENST00000568108 LMTK3Q96Q04 1460 aa10.5□□□□□ -0.73
PTPN9-205ENST00000568108 EFCAB5A4FU69 1503 aa10.5□□□□□ -0.73
PTPN9-205ENST00000568108 ARHGEF40Q8TER5 1519 aa10.5□□□□□ -0.73
PTPN9-205ENST00000568108 UBTFP17480 764 aaKnown RBP10.5□□□□□ -0.73
PTPN9-205ENST00000568108 RICTORQ6R327 1708 aa10.5□□□□□ -0.73
PTPN9-205ENST00000568108 YEATS2Q9ULM3 1422 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms