RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 DIP2BQ9P265 1576 aa30.72■■■□□ 2.51
CDH3-205ENST00000566808 RUSC2Q8N2Y8 1516 aa30.71■■■□□ 2.51
CDH3-205ENST00000566808 KDM6BO15054 1643 aa30.65■■■□□ 2.5
CDH3-205ENST00000566808 FAM69CQ0P6D2 419 aa30.63■■■□□ 2.49
CDH3-205ENST00000566808 ADCY10Q96PN6 1610 aa30.62■■■□□ 2.49
CDH3-205ENST00000566808 JPH4Q96JJ6 628 aa30.61■■■□□ 2.49
CDH3-205ENST00000566808 NPM1P06748 294 aaKnown RBP eCLIP30.56■■■□□ 2.48
CDH3-205ENST00000566808 TSPOAP1O95153 1857 aa30.51■■■□□ 2.47
CDH3-205ENST00000566808 KDM4FA0A1W2PPD8 638 aa30.49■■■□□ 2.47
CDH3-205ENST00000566808 KIAA0586Q9BVV6 1533 aa30.37■■■□□ 2.45
CDH3-205ENST00000566808 ILDR1Q86SU0 546 aaPredicted RBP30.32■■■□□ 2.44
CDH3-205ENST00000566808 CUL7Q14999 1698 aa30.3■■■□□ 2.44
CDH3-205ENST00000566808 SUPT5HO00267 1087 aaKnown RBP30.28■■■□□ 2.44
CDH3-205ENST00000566808 PPRC1Q5VV67 1664 aaKnown RBP30.25■■■□□ 2.43
CDH3-205ENST00000566808 GLI2P10070 1586 aa30.21■■■□□ 2.43
CDH3-205ENST00000566808 ABCC2Q92887 1545 aa30.21■■■□□ 2.43
CDH3-205ENST00000566808 ADGRL1O94910 1474 aa30.2■■■□□ 2.43
CDH3-205ENST00000566808 PTPRGP23470 1445 aa30.18■■■□□ 2.42
CDH3-205ENST00000566808 PLB1Q6P1J6 1458 aa30.16■■■□□ 2.42
CDH3-205ENST00000566808 ASXL2Q76L83 1435 aa30.13■■■□□ 2.41
CDH3-205ENST00000566808 IGF1RP08069 1367 aa30.12■■■□□ 2.41
CDH3-205ENST00000566808 KIF27Q86VH2 1401 aa30.11■■■□□ 2.41
CDH3-205ENST00000566808 CARMIL2Q6F5E8 1435 aa30.09■■■□□ 2.41
CDH3-205ENST00000566808 TNIKQ9UKE5 1360 aa30.08■■■□□ 2.41
CDH3-205ENST00000566808 HECW2Q9P2P5 1572 aa30.07■■■□□ 2.4
CDH3-205ENST00000566808 UHRF1BP1LA0JNW5 1464 aa30.06■■■□□ 2.4
CDH3-205ENST00000566808 MAP3K4Q9Y6R4 1608 aa30.05■■■□□ 2.4
CDH3-205ENST00000566808 IQGAP2Q13576 1575 aa30.03■■■□□ 2.4
CDH3-205ENST00000566808 TEX14Q8IWB6 1497 aa29.99■■■□□ 2.39
CDH3-205ENST00000566808 COL17A1Q9UMD9 1497 aaPredicted RBP29.97■■■□□ 2.39
CDH3-205ENST00000566808 TTBK1Q5TCY1 1321 aaPredicted RBP29.96■■■□□ 2.39
CDH3-205ENST00000566808 EPRSP07814 1512 aaKnown RBP29.96■■■□□ 2.39
CDH3-205ENST00000566808 UACAQ9BZF9 1416 aa29.95■■■□□ 2.38
CDH3-205ENST00000566808 KDM5BQ9UGL1 1544 aa29.92■■■□□ 2.38
CDH3-205ENST00000566808 CARMIL1Q5VZK9 1371 aa29.91■■■□□ 2.38
CDH3-205ENST00000566808 ZCCHC11Q5TAX3 1644 aaKnown RBP29.91■■■□□ 2.38
CDH3-205ENST00000566808 DISP1Q96F81 1524 aa29.89■■■□□ 2.38
CDH3-205ENST00000566808 UGGT2Q9NYU1 1516 aa29.79■■■□□ 2.36
CDH3-205ENST00000566808 KIAA0556O60303 1618 aa29.78■■■□□ 2.36
CDH3-205ENST00000566808 WDR7Q9Y4E6 1490 aa29.76■■■□□ 2.35
CDH3-205ENST00000566808 CFAP43Q8NDM7 1665 aa29.72■■■□□ 2.35
CDH3-205ENST00000566808 MAGI3Q5TCQ9 1506 aa29.67■■■□□ 2.34
CDH3-205ENST00000566808 KIF21BO75037 1637 aa29.63■■■□□ 2.33
CDH3-205ENST00000566808 RAPGEF2Q9Y4G8 1499 aa29.62■■■□□ 2.33
CDH3-205ENST00000566808 CD109Q6YHK3 1445 aa29.59■■■□□ 2.33
CDH3-205ENST00000566808 CTTNBP2Q8WZ74 1663 aa29.56■■■□□ 2.32
CDH3-205ENST00000566808 FBXO41Q8TF61 875 aa29.53■■■□□ 2.32
CDH3-205ENST00000566808 ABCA8O94911 1581 aa29.52■■■□□ 2.32
CDH3-205ENST00000566808 GOLGA3Q08378 1498 aa29.48■■■□□ 2.31
CDH3-205ENST00000566808 ARAP3Q8WWN8 1544 aa29.46■■■□□ 2.31
CDH3-205ENST00000566808 ADAMTSL3P82987 1691 aa29.44■■■□□ 2.3
CDH3-205ENST00000566808 KCNH8Q96L42 1107 aa29.39■■■□□ 2.3
CDH3-205ENST00000566808 PTPRMP28827 1452 aa29.39■■■□□ 2.3
CDH3-205ENST00000566808 ABCA9Q8IUA7 1624 aa29.33■■■□□ 2.29
CDH3-205ENST00000566808 PCF11O94913 1555 aaKnown RBP29.32■■■□□ 2.28
CDH3-205ENST00000566808 BCORL1Q5H9F3 1711 aa29.3■■■□□ 2.28
CDH3-205ENST00000566808 PHLDB1Q86UU1 1377 aa29.29■■■□□ 2.28
CDH3-205ENST00000566808 MADDQ8WXG6 1647 aa29.27■■■□□ 2.28
CDH3-205ENST00000566808 LMTK3Q96Q04 1460 aa29.23■■■□□ 2.27
CDH3-205ENST00000566808 NEO1Q92859 1461 aa29.22■■■□□ 2.27
CDH3-205ENST00000566808 FRMPD1Q5SYB0 1578 aa29.22■■■□□ 2.27
CDH3-205ENST00000566808 ATP10BO94823 1461 aa29.19■■■□□ 2.26
CDH3-205ENST00000566808 ARHGEF40Q8TER5 1519 aa29.16■■■□□ 2.26
CDH3-205ENST00000566808 RIMS1Q86UR5 1692 aaKnown RBP29.14■■■□□ 2.26
CDH3-205ENST00000566808 PRXQ9BXM0 1461 aa29.13■■■□□ 2.25
CDH3-205ENST00000566808 RAPGEF3O95398 923 aa29.11■■■□□ 2.25
CDH3-205ENST00000566808 FAM9AQ8IZU1 332 aaPredicted RBP29.1■■■□□ 2.25
CDH3-205ENST00000566808 ARID3CA6NKF2 412 aa29.08■■■□□ 2.25
CDH3-205ENST00000566808 RAPGEF6Q8TEU7 1601 aa29.08■■■□□ 2.25
CDH3-205ENST00000566808 RICTORQ6R327 1708 aa29.06■■■□□ 2.24
CDH3-205ENST00000566808 ARID4BQ4LE39 1312 aaPredicted RBP29.05■■■□□ 2.24
CDH3-205ENST00000566808 SAMD9Q5K651 1589 aa29.05■■■□□ 2.24
CDH3-205ENST00000566808 CFAP74Q9C0B2 1584 aa29.01■■■□□ 2.24
CDH3-205ENST00000566808 FANCAO15360 1455 aa28.97■■■□□ 2.23
CDH3-205ENST00000566808 DENND4BO75064 1496 aaPredicted RBP28.96■■■□□ 2.23
CDH3-205ENST00000566808 ZMYM4Q5VZL5 1548 aa28.95■■■□□ 2.23
CDH3-205ENST00000566808 POGZQ7Z3K3 1410 aa28.94■■■□□ 2.22
CDH3-205ENST00000566808 P3H3Q8IVL6 736 aa28.93■■■□□ 2.22
CDH3-205ENST00000566808 FHOD3Q2V2M9 1422 aa28.93■■■□□ 2.22
CDH3-205ENST00000566808 NUP153P49790 1475 aaKnown RBP28.92■■■□□ 2.22
CDH3-205ENST00000566808 FER1L4A9Z1Z3 1794 aa28.9■■■□□ 2.22
CDH3-205ENST00000566808 EFCAB5A4FU69 1503 aa28.9■■■□□ 2.22
CDH3-205ENST00000566808 AKNAQ7Z591 1439 aa28.9■■■□□ 2.22
CDH3-205ENST00000566808 SIGLEC1Q9BZZ2 1709 aa28.9■■■□□ 2.22
CDH3-205ENST00000566808 HSPA2P54652 639 aa28.89■■■□□ 2.22
CDH3-205ENST00000566808 ZFYVE16Q7Z3T8 1539 aa28.89■■■□□ 2.21
CDH3-205ENST00000566808 TTC37Q6PGP7 1564 aa28.88■■■□□ 2.21
CDH3-205ENST00000566808 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.85■■■□□ 2.21
CDH3-205ENST00000566808 HNRNPUL2Q1KMD3 747 aaKnown RBP28.85■■■□□ 2.21
CDH3-205ENST00000566808 CERKQ8TCT0 537 aa28.85■■■□□ 2.21
CDH3-205ENST00000566808 MAGI2Q86UL8 1455 aa28.82■■■□□ 2.2
CDH3-205ENST00000566808 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.81■■■□□ 2.2
CDH3-205ENST00000566808 PREX1Q8TCU6 1659 aa28.8■■■□□ 2.2
CDH3-205ENST00000566808 YEATS2Q9ULM3 1422 aa28.79■■■□□ 2.2
CDH3-205ENST00000566808 HECW1Q76N89 1606 aa28.76■■■□□ 2.19
CDH3-205ENST00000566808 PLPPR3Q6T4P5 718 aa28.75■■■□□ 2.19
CDH3-205ENST00000566808 ARHGEF12Q9NZN5 1544 aa28.72■■■□□ 2.19
CDH3-205ENST00000566808 PLEKHD1A6NEE1 506 aa28.71■■■□□ 2.19
CDH3-205ENST00000566808 DISP3Q9P2K9 1392 aa28.68■■■□□ 2.18
CDH3-205ENST00000566808 STRCQ7RTU9 1775 aa28.65■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms