RNA–Protein interactions for RNA: ENST00000566029.5

CHD9-218, Transcript of chromodomain helicase DNA binding protein 9, human

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 13,110 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-218	ENST00000566029	PKNOX2	Q96KN3	472 aa		4.03	□□□□□ -1.76
CHD9-218	ENST00000566029	PPP4R2	Q9NY27	417 aa		4.03	□□□□□ -1.76
CHD9-218	ENST00000566029		A0A0U1RQG5	324 aa	Predicted RBP	4.03	□□□□□ -1.76
CHD9-218	ENST00000566029	NEFM	P07197	916 aa		4.03	□□□□□ -1.76
CHD9-218	ENST00000566029	PPP1R15A	O75807	674 aa	Predicted RBP	4.03	□□□□□ -1.77
CHD9-218	ENST00000566029	RB1CC1	Q8TDY2	1594 aa		4.03	□□□□□ -1.77
CHD9-218	ENST00000566029	EEA1	Q15075	1411 aa		4.02	□□□□□ -1.77
CHD9-218	ENST00000566029	NACAD	O15069	1562 aa		4.02	□□□□□ -1.77
CHD9-218	ENST00000566029	ITGAE	P38570	1179 aa		4.02	□□□□□ -1.77
CHD9-218	ENST00000566029	AEBP2	Q6ZN18	517 aa	Predicted RBP	4.02	□□□□□ -1.77
CHD9-218	ENST00000566029	HMGB3	O15347	200 aa	Known RBP	4.02	□□□□□ -1.77
CHD9-218	ENST00000566029	TAOK2	Q9UL54	1235 aa		4.02	□□□□□ -1.77
CHD9-218	ENST00000566029	ZNF326	Q5BKZ1	582 aa	Known RBP	4.01	□□□□□ -1.77
CHD9-218	ENST00000566029	HAP1	P54257	671 aa	Predicted RBP	4.01	□□□□□ -1.77
CHD9-218	ENST00000566029	VPS8	Q8N3P4	1428 aa		4	□□□□□ -1.77
CHD9-218	ENST00000566029	SOGA1	O94964	1423 aa		3.99	□□□□□ -1.77
CHD9-218	ENST00000566029	IPO9	Q96P70	1041 aa	Known RBP	3.98	□□□□□ -1.77
CHD9-218	ENST00000566029	NCAPD3	P42695	1498 aa		3.98	□□□□□ -1.77
CHD9-218	ENST00000566029	PLEKHG5	O94827	1062 aa		3.97	□□□□□ -1.77
CHD9-218	ENST00000566029	CLIP1	P30622	1438 aa		3.97	□□□□□ -1.77
CHD9-218	ENST00000566029	EIF4G1	Q04637	1599 aa	Known RBP	3.97	□□□□□ -1.77
CHD9-218	ENST00000566029	RSPH6A	Q9H0K4	717 aa		3.97	□□□□□ -1.77
CHD9-218	ENST00000566029	CCDC88B	A6NC98	1476 aa		3.97	□□□□□ -1.77
CHD9-218	ENST00000566029	FBXO3	Q9UK99	471 aa		3.96	□□□□□ -1.77
CHD9-218	ENST00000566029	GOLGA3	Q08378	1498 aa		3.96	□□□□□ -1.78
CHD9-218	ENST00000566029	BRPF3	Q9ULD4	1205 aa		3.96	□□□□□ -1.78
CHD9-218	ENST00000566029	RRBP1	Q9P2E9	1410 aa	Known RBP	3.95	□□□□□ -1.78
CHD9-218	ENST00000566029	DDX10	Q13206	875 aa	Known RBP	3.95	□□□□□ -1.78
CHD9-218	ENST00000566029	IRX6	P78412	446 aa	Predicted RBP	3.95	□□□□□ -1.78
CHD9-218	ENST00000566029	SENP3	Q9H4L4	574 aa	Predicted RBP	3.95	□□□□□ -1.78
CHD9-218	ENST00000566029	CEP164	Q9UPV0	1460 aa		3.95	□□□□□ -1.78
CHD9-218	ENST00000566029	HOMEZ	Q8IX15	550 aa		3.95	□□□□□ -1.78
CHD9-218	ENST00000566029	PPM1G	O15355	546 aa	Predicted RBP	3.95	□□□□□ -1.78
CHD9-218	ENST00000566029	FAM43A	Q8N2R8	423 aa		3.94	□□□□□ -1.78
CHD9-218	ENST00000566029	USP35	Q9P2H5	1018 aa		3.94	□□□□□ -1.78
CHD9-218	ENST00000566029	TIMELESS	Q9UNS1	1208 aa		3.94	□□□□□ -1.78
CHD9-218	ENST00000566029	RNF123	Q5XPI4	1314 aa		3.94	□□□□□ -1.78
CHD9-218	ENST00000566029	ANP32A	P39687	249 aa	Known RBP	3.93	□□□□□ -1.78
CHD9-218	ENST00000566029	TRIM52	Q96A61	297 aa		3.93	□□□□□ -1.78
CHD9-218	ENST00000566029	CECR2	Q9BXF3	1484 aa		3.93	□□□□□ -1.78
CHD9-218	ENST00000566029	NCL	P19338	710 aa	Known RBP	3.92	□□□□□ -1.78
CHD9-218	ENST00000566029	ZMYND15	Q9H091	742 aa		3.92	□□□□□ -1.78
CHD9-218	ENST00000566029	RUSC2	Q8N2Y8	1516 aa		3.92	□□□□□ -1.78
CHD9-218	ENST00000566029	VSIG10	Q8N0Z9	540 aa		3.91	□□□□□ -1.78
CHD9-218	ENST00000566029	UBTF	P17480	764 aa	Known RBP	3.91	□□□□□ -1.78
CHD9-218	ENST00000566029	ZBTB47	Q9UFB7	747 aa	Predicted RBP	3.91	□□□□□ -1.78
CHD9-218	ENST00000566029	ANP32C	O43423	234 aa		3.91	□□□□□ -1.78
CHD9-218	ENST00000566029	ABCC8	Q09428	1581 aa		3.91	□□□□□ -1.78
CHD9-218	ENST00000566029	MAPKBP1	O60336	1514 aa		3.9	□□□□□ -1.78
CHD9-218	ENST00000566029	MS4A1	P11836	297 aa		3.9	□□□□□ -1.78
CHD9-218	ENST00000566029	SMARCA2	P51531	1590 aa		3.9	□□□□□ -1.78
CHD9-218	ENST00000566029	SMG6	Q86US8	1419 aa	Known RBP	3.9	□□□□□ -1.78
CHD9-218	ENST00000566029	KIF21B	O75037	1637 aa		3.9	□□□□□ -1.78
CHD9-218	ENST00000566029	PATL2	C9JE40	543 aa	Known RBP	3.9	□□□□□ -1.79
CHD9-218	ENST00000566029	ANP32B	Q92688	251 aa	Known RBP	3.9	□□□□□ -1.79
CHD9-218	ENST00000566029	CANX	P27824	592 aa	Known RBP	3.9	□□□□□ -1.79
CHD9-218	ENST00000566029	HNRNPU	Q00839	825 aa	Known RBP eCLIP	3.9	□□□□□ -1.79
CHD9-218	ENST00000566029	GSE1	Q14687	1217 aa		3.9	□□□□□ -1.79
CHD9-218	ENST00000566029	MROH2B	Q7Z745	1585 aa		3.9	□□□□□ -1.79
CHD9-218	ENST00000566029	ZNF526	Q8TF50	670 aa	Predicted RBP	3.9	□□□□□ -1.79
CHD9-218	ENST00000566029	B4GALNT3	Q6L9W6	998 aa		3.89	□□□□□ -1.79
CHD9-218	ENST00000566029	LAS1L	Q9Y4W2	734 aa	Known RBP	3.89	□□□□□ -1.79
CHD9-218	ENST00000566029	MEX3C	Q5U5Q3	659 aa	Known RBP	3.89	□□□□□ -1.79
CHD9-218	ENST00000566029	NCOA2	Q15596	1464 aa		3.89	□□□□□ -1.79
CHD9-218	ENST00000566029	KANK4	Q5T7N3	995 aa	Predicted RBP	3.89	□□□□□ -1.79
CHD9-218	ENST00000566029	PTMS	P20962	102 aa		3.89	□□□□□ -1.79
CHD9-218	ENST00000566029	RRAGD	Q9NQL2	400 aa	Predicted RBP	3.89	□□□□□ -1.79
CHD9-218	ENST00000566029	DCAF11	Q8TEB1	546 aa		3.88	□□□□□ -1.79
CHD9-218	ENST00000566029	SIN3A	Q96ST3	1273 aa		3.88	□□□□□ -1.79
CHD9-218	ENST00000566029	TCERG1	O14776	1098 aa	Known RBP	3.88	□□□□□ -1.79
CHD9-218	ENST00000566029	PDE4A	P27815	886 aa		3.88	□□□□□ -1.79
CHD9-218	ENST00000566029	RAB3GAP2	Q9H2M9	1393 aa		3.88	□□□□□ -1.79
CHD9-218	ENST00000566029	CDK11B	P21127	795 aa	Known RBP	3.88	□□□□□ -1.79
CHD9-218	ENST00000566029	FRAT1	Q92837	279 aa	Predicted RBP	3.88	□□□□□ -1.79
CHD9-218	ENST00000566029	CCNB3	Q8WWL7	1395 aa		3.87	□□□□□ -1.79
CHD9-218	ENST00000566029	SETD5	Q9C0A6	1442 aa		3.87	□□□□□ -1.79
CHD9-218	ENST00000566029	HSP90AA1	P07900	732 aa	Known RBP	3.87	□□□□□ -1.79
CHD9-218	ENST00000566029	BACH2	Q9BYV9	841 aa		3.87	□□□□□ -1.79
CHD9-218	ENST00000566029	CCDC184	Q52MB2	194 aa		3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	CENPJ	Q9HC77	1338 aa	Predicted RBP	3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	ZBED9	Q6R2W3	1325 aa		3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	RYDEN	Q9NUL5	291 aa	Known RBP	3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	ARAP1	Q96P48	1450 aa		3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	FHAD1	B1AJZ9	1412 aa		3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	CNTLN	Q9NXG0	1405 aa		3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	RRP9	O43818	475 aa	Known RBP	3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	RBM10	P98175	930 aa	Known RBP	3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	CALD1	Q05682	793 aa	Known RBP	3.86	□□□□□ -1.79
CHD9-218	ENST00000566029	AAMP	Q13685	434 aa		3.85	□□□□□ -1.79
CHD9-218	ENST00000566029	FOXD1	Q16676	465 aa		3.85	□□□□□ -1.79
CHD9-218	ENST00000566029	PRDM4	Q9UKN5	801 aa		3.85	□□□□□ -1.79
CHD9-218	ENST00000566029	NFKBIB	Q15653	356 aa		3.85	□□□□□ -1.79
CHD9-218	ENST00000566029	NAP1L5	Q96NT1	182 aa	Predicted RBP	3.85	□□□□□ -1.79
CHD9-218	ENST00000566029	NUDC	Q9Y266	331 aa		3.85	□□□□□ -1.79
CHD9-218	ENST00000566029	PRKRIP1	Q9H875	184 aa	Predicted RBP	3.84	□□□□□ -1.79
CHD9-218	ENST00000566029	WDR97	A6NE52	1622 aa		3.84	□□□□□ -1.79
CHD9-218	ENST00000566029	KDM5B	Q9UGL1	1544 aa		3.84	□□□□□ -1.79
CHD9-218	ENST00000566029	DDRGK1	Q96HY6	314 aa		3.84	□□□□□ -1.8
CHD9-218	ENST00000566029	HIRIP3	Q9BW71	556 aa	Predicted RBP	3.83	□□□□□ -1.8
CHD9-218	ENST00000566029	HSPA5	P11021	654 aa	Known RBP	3.83	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms