RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.23□□□□□ -1.09
CLK3-212ENST00000563418 MTERF4Q7Z6M4 381 aaKnown RBP8.22□□□□□ -1.09
CLK3-212ENST00000563418 LAS1LQ9Y4W2 734 aaKnown RBP8.22□□□□□ -1.09
CLK3-212ENST00000563418 EEA1Q15075 1411 aa8.22□□□□□ -1.09
CLK3-212ENST00000563418 MAP7D2Q96T17 732 aa8.22□□□□□ -1.09
CLK3-212ENST00000563418 POLR3GLQ9BT43 218 aa8.21□□□□□ -1.09
CLK3-212ENST00000563418 GSE1Q14687 1217 aa8.21□□□□□ -1.1
CLK3-212ENST00000563418 RRP9O43818 475 aaKnown RBP8.21□□□□□ -1.1
CLK3-212ENST00000563418 CHAF1AQ13111 956 aaPredicted RBP8.2□□□□□ -1.1
CLK3-212ENST00000563418 CANXP27824 592 aaKnown RBP8.2□□□□□ -1.1
CLK3-212ENST00000563418 DDX10Q13206 875 aaKnown RBP8.19□□□□□ -1.1
CLK3-212ENST00000563418 TONSLQ96HA7 1378 aa8.19□□□□□ -1.1
CLK3-212ENST00000563418 SALL2Q9Y467 1007 aaPredicted RBP8.18□□□□□ -1.1
CLK3-212ENST00000563418 FAM43AQ8N2R8 423 aa8.17□□□□□ -1.1
CLK3-212ENST00000563418 ARXQ96QS3 562 aa8.17□□□□□ -1.1
CLK3-212ENST00000563418 DNTTIP2Q5QJE6 756 aaKnown RBP8.16□□□□□ -1.1
CLK3-212ENST00000563418 ATP1B4Q9UN42 357 aaPredicted RBP8.16□□□□□ -1.1
CLK3-212ENST00000563418 TCERG1O14776 1098 aaKnown RBP8.15□□□□□ -1.1
CLK3-212ENST00000563418 TNNT3P45378 269 aaPredicted RBP8.15□□□□□ -1.11
CLK3-212ENST00000563418 A0A0U1RQG5 324 aaPredicted RBP8.14□□□□□ -1.11
CLK3-212ENST00000563418 TAF3Q5VWG9 929 aa8.14□□□□□ -1.11
CLK3-212ENST00000563418 PTMAP06454 111 aaKnown RBP8.14□□□□□ -1.11
CLK3-212ENST00000563418 GOLGA6L3A6NEY3 463 aa8.14□□□□□ -1.11
CLK3-212ENST00000563418 TPM2P07951 284 aa8.14□□□□□ -1.11
CLK3-212ENST00000563418 IRX6P78412 446 aaPredicted RBP8.13□□□□□ -1.11
CLK3-212ENST00000563418 MRS2Q9HD23 443 aa8.13□□□□□ -1.11
CLK3-212ENST00000563418 PDE4CQ08493 712 aa8.12□□□□□ -1.11
CLK3-212ENST00000563418 FAM9BQ8IZU0 186 aa8.12□□□□□ -1.11
CLK3-212ENST00000563418 CALRP27797 417 aaKnown RBP8.1□□□□□ -1.11
CLK3-212ENST00000563418 TIMELESSQ9UNS1 1208 aa8.09□□□□□ -1.11
CLK3-212ENST00000563418 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.09□□□□□ -1.11
CLK3-212ENST00000563418 FAM50AQ14320 339 aaKnown RBP8.09□□□□□ -1.12
CLK3-212ENST00000563418 B4GALNT3Q6L9W6 998 aa8.07□□□□□ -1.12
CLK3-212ENST00000563418 CSPP1Q1MSJ5 1256 aa8.06□□□□□ -1.12
CLK3-212ENST00000563418 TMC1Q8TDI8 760 aa8.06□□□□□ -1.12
CLK3-212ENST00000563418 KIAA2012Q0VF49 1180 aa8.06□□□□□ -1.12
CLK3-212ENST00000563418 MYH16Q9H6N6 1097 aa8.06□□□□□ -1.12
CLK3-212ENST00000563418 APPP05067 770 aa8.06□□□□□ -1.12
CLK3-212ENST00000563418 GBP4Q96PP9 640 aa8.05□□□□□ -1.12
CLK3-212ENST00000563418 GOLGA6L6A8MZA4 724 aa8.05□□□□□ -1.12
CLK3-212ENST00000563418 CEP162Q5TB80 1403 aa8.04□□□□□ -1.12
CLK3-212ENST00000563418 DDX11L8A8MPP1 907 aa8.03□□□□□ -1.12
CLK3-212ENST00000563418 CCDC66A2RUB6 948 aa8.03□□□□□ -1.12
CLK3-212ENST00000563418 MS4A1P11836 297 aa8.03□□□□□ -1.12
CLK3-212ENST00000563418 ZCCHC6Q5VYS8 1495 aaKnown RBP8.03□□□□□ -1.12
CLK3-212ENST00000563418 TAF7LQ5H9L4 462 aa8.02□□□□□ -1.13
CLK3-212ENST00000563418 GOLGA6L1Q8N7Z2 621 aa8.02□□□□□ -1.13
CLK3-212ENST00000563418 ZMYND15Q9H091 742 aa8.02□□□□□ -1.13
CLK3-212ENST00000563418 NRDCO43847 1150 aa8.02□□□□□ -1.13
CLK3-212ENST00000563418 ISY1Q9ULR0 285 aaKnown RBP8.01□□□□□ -1.13
CLK3-212ENST00000563418 HSCBQ8IWL3 235 aa8.01□□□□□ -1.13
CLK3-212ENST00000563418 IL27Q8NEV9 243 aa8.01□□□□□ -1.13
CLK3-212ENST00000563418 SKOR2Q2VWA4 1001 aaPredicted RBP8□□□□□ -1.13
CLK3-212ENST00000563418 GOLGA3Q08378 1498 aa8□□□□□ -1.13
CLK3-212ENST00000563418 AMER1Q5JTC6 1135 aaPredicted RBP8□□□□□ -1.13
CLK3-212ENST00000563418 TSPYL1Q9H0U9 437 aa8□□□□□ -1.13
CLK3-212ENST00000563418 EIF4G2P78344 907 aaKnown RBP eCLIP8□□□□□ -1.13
CLK3-212ENST00000563418 CFAP44Q96MT7 982 aa7.99□□□□□ -1.13
CLK3-212ENST00000563418 PDCL3Q9H2J4 239 aa7.98□□□□□ -1.13
CLK3-212ENST00000563418 ZNF771Q7L3S4 317 aaPredicted RBP7.98□□□□□ -1.13
CLK3-212ENST00000563418 SETQ01105 290 aaPredicted RBP7.98□□□□□ -1.13
CLK3-212ENST00000563418 TNIKQ9UKE5 1360 aa7.98□□□□□ -1.13
CLK3-212ENST00000563418 PDIA4P13667 645 aaKnown RBP7.97□□□□□ -1.13
CLK3-212ENST00000563418 SYAP1Q96A49 352 aaPredicted RBP7.97□□□□□ -1.13
CLK3-212ENST00000563418 CLIP1P30622 1438 aa7.97□□□□□ -1.13
CLK3-212ENST00000563418 NOM1Q5C9Z4 860 aaKnown RBP7.97□□□□□ -1.13
CLK3-212ENST00000563418 MRE11P49959 708 aa7.95□□□□□ -1.14
CLK3-212ENST00000563418 HSP90AB1P08238 724 aaKnown RBP7.95□□□□□ -1.14
CLK3-212ENST00000563418 FAM13BQ9NYF5 915 aa7.95□□□□□ -1.14
CLK3-212ENST00000563418 C11orf95C9JLR9 678 aaPredicted RBP7.94□□□□□ -1.14
CLK3-212ENST00000563418 CASC1Q6TDU7 716 aa7.94□□□□□ -1.14
CLK3-212ENST00000563418 WRNQ14191 1432 aaPredicted RBP eCLIP7.94□□□□□ -1.14
CLK3-212ENST00000563418 BRPF3Q9ULD4 1205 aa7.94□□□□□ -1.14
CLK3-212ENST00000563418 PHF14O94880 888 aa7.93□□□□□ -1.14
CLK3-212ENST00000563418 WDR43Q15061 677 aaKnown RBP eCLIP7.93□□□□□ -1.14
CLK3-212ENST00000563418 ZBED9Q6R2W3 1325 aa7.93□□□□□ -1.14
CLK3-212ENST00000563418 HTATSF1O43719 755 aaKnown RBP7.93□□□□□ -1.14
CLK3-212ENST00000563418 HMGN5P82970 282 aaKnown RBP7.93□□□□□ -1.14
CLK3-212ENST00000563418 TEX35Q5T0J7 233 aa7.93□□□□□ -1.14
CLK3-212ENST00000563418 NFKBIBQ15653 356 aa7.92□□□□□ -1.14
CLK3-212ENST00000563418 PDE4AP27815 886 aa7.92□□□□□ -1.14
CLK3-212ENST00000563418 FRAT1Q92837 279 aaPredicted RBP7.92□□□□□ -1.14
CLK3-212ENST00000563418 CWC15Q9P013 229 aaKnown RBP7.92□□□□□ -1.14
CLK3-212ENST00000563418 NUDCQ9Y266 331 aa7.92□□□□□ -1.14
CLK3-212ENST00000563418 GPS2Q13227 327 aa7.92□□□□□ -1.14
CLK3-212ENST00000563418 CHMP4BQ9H444 224 aaKnown RBP7.91□□□□□ -1.14
CLK3-212ENST00000563418 CALD1Q05682 793 aaKnown RBP7.9□□□□□ -1.15
CLK3-212ENST00000563418 FAM161AQ3B820 660 aa7.9□□□□□ -1.15
CLK3-212ENST00000563418 ZRSR1Q15695 479 aaKnown RBP7.89□□□□□ -1.15
CLK3-212ENST00000563418 ARID3AQ99856 593 aa7.89□□□□□ -1.15
CLK3-212ENST00000563418 GZF1Q9H116 711 aaPredicted RBP7.89□□□□□ -1.15
CLK3-212ENST00000563418 CEP164Q9UPV0 1460 aa7.89□□□□□ -1.15
CLK3-212ENST00000563418 RGS3P49796 1198 aa7.89□□□□□ -1.15
CLK3-212ENST00000563418 PDE3BQ13370 1112 aa7.88□□□□□ -1.15
CLK3-212ENST00000563418 MSH5O43196 834 aa7.87□□□□□ -1.15
CLK3-212ENST00000563418 CCDC173Q0VFZ6 552 aa7.87□□□□□ -1.15
CLK3-212ENST00000563418 RB1CC1Q8TDY2 1594 aa7.87□□□□□ -1.15
CLK3-212ENST00000563418 SLKQ9H2G2 1235 aaPredicted RBP7.87□□□□□ -1.15
CLK3-212ENST00000563418 HMGB1P09429 215 aaKnown RBP7.87□□□□□ -1.15
CLK3-212ENST00000563418 BBXQ8WY36 941 aaPredicted RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms