RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 PCGF6Q9BYE7 350 aa28.25■■■□□ 2.11
COMMD4-208ENST00000563220 MAGI1Q96QZ7 1491 aaPredicted RBP28.22■■■□□ 2.11
COMMD4-208ENST00000563220 TRIM26Q12899 539 aaPredicted RBP28.22■■■□□ 2.11
COMMD4-208ENST00000563220 CTTNBP2Q8WZ74 1663 aa28.22■■■□□ 2.11
COMMD4-208ENST00000563220 P3H3Q8IVL6 736 aa28.15■■■□□ 2.1
COMMD4-208ENST00000563220 CHMP7Q8WUX9 453 aaPredicted RBP28.15■■■□□ 2.1
COMMD4-208ENST00000563220 GRIN2AQ12879 1464 aa28.14■■■□□ 2.09
COMMD4-208ENST00000563220 SYNJ2O15056 1496 aa28.13■■■□□ 2.09
COMMD4-208ENST00000563220 FBLN2P98095 1184 aa28.09■■■□□ 2.09
COMMD4-208ENST00000563220 EFCAB5A4FU69 1503 aa28.08■■■□□ 2.09
COMMD4-208ENST00000563220 FHOD3Q2V2M9 1422 aa28.07■■■□□ 2.08
COMMD4-208ENST00000563220 TTBK1Q5TCY1 1321 aaPredicted RBP28.06■■■□□ 2.08
COMMD4-208ENST00000563220 APLP2Q06481 763 aa28.05■■■□□ 2.08
COMMD4-208ENST00000563220 IQGAP2Q13576 1575 aa28.02■■■□□ 2.08
COMMD4-208ENST00000563220 KIAA0586Q9BVV6 1533 aa28.02■■■□□ 2.08
COMMD4-208ENST00000563220 SAMD9Q5K651 1589 aa28■■■□□ 2.07
COMMD4-208ENST00000563220 CEP170Q5SW79 1584 aa27.95■■■□□ 2.07
COMMD4-208ENST00000563220 NUP160Q12769 1436 aa27.95■■■□□ 2.07
COMMD4-208ENST00000563220 UGGT2Q9NYU1 1516 aa27.91■■■□□ 2.06
COMMD4-208ENST00000563220 KANK4Q5T7N3 995 aaPredicted RBP27.89■■■□□ 2.06
COMMD4-208ENST00000563220 FMN1Q68DA7 1419 aa27.88■■■□□ 2.05
COMMD4-208ENST00000563220 PCF11O94913 1555 aaKnown RBP27.84■■■□□ 2.05
COMMD4-208ENST00000563220 CASKIN1Q8WXD9 1431 aa27.84■■■□□ 2.05
COMMD4-208ENST00000563220 ATP1B4Q9UN42 357 aaPredicted RBP27.83■■■□□ 2.04
COMMD4-208ENST00000563220 DISP1Q96F81 1524 aa27.82■■■□□ 2.04
COMMD4-208ENST00000563220 JPH4Q96JJ6 628 aa27.81■■■□□ 2.04
COMMD4-208ENST00000563220 FYCO1Q9BQS8 1478 aa27.8■■■□□ 2.04
COMMD4-208ENST00000563220 MAP3K1Q13233 1512 aa27.78■■■□□ 2.04
COMMD4-208ENST00000563220 CHD1O14646 1710 aa27.76■■■□□ 2.03
COMMD4-208ENST00000563220 TIAM1Q13009 1591 aa27.76■■■□□ 2.03
COMMD4-208ENST00000563220 KIAA0556O60303 1618 aa27.75■■■□□ 2.03
COMMD4-208ENST00000563220 LRRC9Q6ZRR7 1453 aa27.67■■■□□ 2.02
COMMD4-208ENST00000563220 CARMIL2Q6F5E8 1435 aa27.65■■■□□ 2.02
COMMD4-208ENST00000563220 CFAP43Q8NDM7 1665 aa27.63■■■□□ 2.01
COMMD4-208ENST00000563220 PRG4Q92954 1404 aaPredicted RBP27.59■■■□□ 2.01
COMMD4-208ENST00000563220 LRRIQ1Q96JM4 1722 aa27.56■■■□□ 2
COMMD4-208ENST00000563220 HECW1Q76N89 1606 aa27.54■■■□□ 2
COMMD4-208ENST00000563220 EPRSP07814 1512 aaKnown RBP27.51■■□□□ 1.99
COMMD4-208ENST00000563220 CCDC18Q5T9S5 1454 aa27.5■■□□□ 1.99
COMMD4-208ENST00000563220 SHROOM2Q13796 1616 aa27.5■■□□□ 1.99
COMMD4-208ENST00000563220 CLASP1Q7Z460 1538 aa27.49■■□□□ 1.99
COMMD4-208ENST00000563220 ARID3CA6NKF2 412 aa27.49■■□□□ 1.99
COMMD4-208ENST00000563220 MTUS2Q5JR59 1369 aa27.49■■□□□ 1.99
COMMD4-208ENST00000563220 PLB1Q6P1J6 1458 aa27.48■■□□□ 1.99
COMMD4-208ENST00000563220 RRBP1Q9P2E9 1410 aaKnown RBP27.48■■□□□ 1.99
COMMD4-208ENST00000563220 NUP153P49790 1475 aaKnown RBP27.47■■□□□ 1.99
COMMD4-208ENST00000563220 PHLDB1Q86UU1 1377 aa27.47■■□□□ 1.99
COMMD4-208ENST00000563220 RAPGEF6Q8TEU7 1601 aa27.46■■□□□ 1.99
COMMD4-208ENST00000563220 CDK13Q14004 1512 aaKnown RBP27.45■■□□□ 1.99
COMMD4-208ENST00000563220 PTPRGP23470 1445 aa27.43■■□□□ 1.98
COMMD4-208ENST00000563220 HNRNPUL2Q1KMD3 747 aaKnown RBP27.42■■□□□ 1.98
COMMD4-208ENST00000563220 MAGI3Q5TCQ9 1506 aa27.42■■□□□ 1.98
COMMD4-208ENST00000563220 CCNB3Q8WWL7 1395 aa27.4■■□□□ 1.98
COMMD4-208ENST00000563220 ERCC6L2Q5T890 1561 aa27.4■■□□□ 1.98
COMMD4-208ENST00000563220 HRCP23327 699 aa27.38■■□□□ 1.97
COMMD4-208ENST00000563220 ABCA8O94911 1581 aa27.37■■□□□ 1.97
COMMD4-208ENST00000563220 EHBP1L1Q8N3D4 1523 aa27.37■■□□□ 1.97
COMMD4-208ENST00000563220 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.34■■□□□ 1.97
COMMD4-208ENST00000563220 OSCARQ8IYS5 282 aa27.33■■□□□ 1.97
COMMD4-208ENST00000563220 NCOA2Q15596 1464 aa27.33■■□□□ 1.97
COMMD4-208ENST00000563220 CDK11AQ9UQ88 783 aaPredicted RBP27.28■■□□□ 1.96
COMMD4-208ENST00000563220 ARHGEF11O15085 1522 aa27.27■■□□□ 1.96
COMMD4-208ENST00000563220 SUPT6HQ7KZ85 1726 aaKnown RBP27.27■■□□□ 1.96
COMMD4-208ENST00000563220 UACAQ9BZF9 1416 aa27.26■■□□□ 1.95
COMMD4-208ENST00000563220 ATP10BO94823 1461 aa27.26■■□□□ 1.95
COMMD4-208ENST00000563220 FAM50AQ14320 339 aaKnown RBP27.23■■□□□ 1.95
COMMD4-208ENST00000563220 FGD6Q6ZV73 1430 aa27.23■■□□□ 1.95
COMMD4-208ENST00000563220 MYOM3Q5VTT5 1437 aa27.21■■□□□ 1.95
COMMD4-208ENST00000563220 ITGAEP38570 1179 aa27.21■■□□□ 1.95
COMMD4-208ENST00000563220 TROQ12816 1431 aaPredicted RBP27.19■■□□□ 1.94
COMMD4-208ENST00000563220 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.17■■□□□ 1.94
COMMD4-208ENST00000563220 PLEKHD1A6NEE1 506 aa27.15■■□□□ 1.94
COMMD4-208ENST00000563220 ABCC2Q92887 1545 aa27.12■■□□□ 1.93
COMMD4-208ENST00000563220 CCER1Q8TC90 406 aaPredicted RBP27.1■■□□□ 1.93
COMMD4-208ENST00000563220 UHRF1BP1LA0JNW5 1464 aa27.06■■□□□ 1.92
COMMD4-208ENST00000563220 MIA2Q96PC5 1412 aa27.06■■□□□ 1.92
COMMD4-208ENST00000563220 PTPN23Q9H3S7 1636 aa27.03■■□□□ 1.92
COMMD4-208ENST00000563220 KIF14Q15058 1648 aa27.03■■□□□ 1.92
COMMD4-208ENST00000563220 TCOF1Q13428 1488 aaKnown RBP27.03■■□□□ 1.92
COMMD4-208ENST00000563220 ADCY10Q96PN6 1610 aa27.02■■□□□ 1.92
COMMD4-208ENST00000563220 ZEB1P37275 1124 aaPredicted RBP27.02■■□□□ 1.92
COMMD4-208ENST00000563220 PTPRKQ15262 1439 aa26.98■■□□□ 1.91
COMMD4-208ENST00000563220 KDM5BQ9UGL1 1544 aa26.98■■□□□ 1.91
COMMD4-208ENST00000563220 GPATCH8Q9UKJ3 1502 aaKnown RBP26.98■■□□□ 1.91
COMMD4-208ENST00000563220 ABCC10Q5T3U5 1492 aa26.96■■□□□ 1.91
COMMD4-208ENST00000563220 ZNF644Q9H582 1327 aaPredicted RBP26.94■■□□□ 1.9
COMMD4-208ENST00000563220 CFDP1Q9UEE9 299 aaPredicted RBP26.93■■□□□ 1.9
COMMD4-208ENST00000563220 SETD5Q9C0A6 1442 aa26.92■■□□□ 1.9
COMMD4-208ENST00000563220 ZCCHC11Q5TAX3 1644 aaKnown RBP26.91■■□□□ 1.9
COMMD4-208ENST00000563220 RAB3GAP2Q9H2M9 1393 aa26.91■■□□□ 1.9
COMMD4-208ENST00000563220 KCNH8Q96L42 1107 aa26.85■■□□□ 1.89
COMMD4-208ENST00000563220 ZNF777Q9ULD5 760 aaPredicted RBP26.85■■□□□ 1.89
COMMD4-208ENST00000563220 ITSN2Q9NZM3 1697 aa26.84■■□□□ 1.89
COMMD4-208ENST00000563220 DHX57Q6P158 1386 aaKnown RBP26.83■■□□□ 1.89
COMMD4-208ENST00000563220 CHIC2Q9UKJ5 165 aa26.83■■□□□ 1.88
COMMD4-208ENST00000563220 CAMSAP2Q08AD1 1489 aa26.82■■□□□ 1.88
COMMD4-208ENST00000563220 CDC42BPAQ5VT25 1732 aa26.81■■□□□ 1.88
COMMD4-208ENST00000563220 HFM1A2PYH4 1435 aa26.79■■□□□ 1.88
COMMD4-208ENST00000563220 ABCC5O15440 1437 aa26.79■■□□□ 1.88
COMMD4-208ENST00000563220 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.79■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms