RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 SUPT16HQ9Y5B9 1047 aaKnown RBP13.63□□□□□ -0.23
GTF3C1-202ENST00000561623 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.62□□□□□ -0.23
GTF3C1-202ENST00000561623 CHIC2Q9UKJ5 165 aa13.61□□□□□ -0.23
GTF3C1-202ENST00000561623 LAS1LQ9Y4W2 734 aaKnown RBP13.6□□□□□ -0.23
GTF3C1-202ENST00000561623 DDRGK1Q96HY6 314 aa13.58□□□□□ -0.23
GTF3C1-202ENST00000561623 WDR43Q15061 677 aaKnown RBP eCLIP13.56□□□□□ -0.24
GTF3C1-202ENST00000561623 CCDC180Q9P1Z9 1646 aa13.56□□□□□ -0.24
GTF3C1-202ENST00000561623 TRIM44Q96DX7 344 aaPredicted RBP13.56□□□□□ -0.24
GTF3C1-202ENST00000561623 NOP58Q9Y2X3 529 aaKnown RBP13.54□□□□□ -0.24
GTF3C1-202ENST00000561623 PHF23Q9BUL5 403 aaPredicted RBP13.54□□□□□ -0.24
GTF3C1-202ENST00000561623 KDM2AQ9Y2K7 1162 aa13.53□□□□□ -0.24
GTF3C1-202ENST00000561623 NPHP1O15259 732 aa13.52□□□□□ -0.24
GTF3C1-202ENST00000561623 NAP1L5Q96NT1 182 aaPredicted RBP13.52□□□□□ -0.25
GTF3C1-202ENST00000561623 BECN1Q14457 450 aa13.52□□□□□ -0.25
GTF3C1-202ENST00000561623 DEKP35659 375 aaKnown RBP13.51□□□□□ -0.25
GTF3C1-202ENST00000561623 SCRIBQ14160 1630 aa13.49□□□□□ -0.25
GTF3C1-202ENST00000561623 EIF4G2P78344 907 aaKnown RBP eCLIP13.49□□□□□ -0.25
GTF3C1-202ENST00000561623 PPM1GO15355 546 aaPredicted RBP13.48□□□□□ -0.25
GTF3C1-202ENST00000561623 ERICH6BQ5W0A0 696 aa13.47□□□□□ -0.25
GTF3C1-202ENST00000561623 LMOD2Q6P5Q4 547 aa13.47□□□□□ -0.25
GTF3C1-202ENST00000561623 PPP4R2Q9NY27 417 aa13.47□□□□□ -0.25
GTF3C1-202ENST00000561623 B4GALNT3Q6L9W6 998 aa13.46□□□□□ -0.25
GTF3C1-202ENST00000561623 NCLP19338 710 aaKnown RBP13.46□□□□□ -0.25
GTF3C1-202ENST00000561623 RBM19Q9Y4C8 960 aaKnown RBP13.46□□□□□ -0.26
GTF3C1-202ENST00000561623 PPP1R15AO75807 674 aaPredicted RBP13.45□□□□□ -0.26
GTF3C1-202ENST00000561623 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.44□□□□□ -0.264e-9■■■□□ 15
GTF3C1-202ENST00000561623 CLIP1P30622 1438 aa13.42□□□□□ -0.26
GTF3C1-202ENST00000561623 DCAF8L1A6NGE4 600 aa13.42□□□□□ -0.26
GTF3C1-202ENST00000561623 TPRNQ4KMQ1 711 aa13.41□□□□□ -0.26
GTF3C1-202ENST00000561623 NCBP3Q53F19 620 aaKnown RBP13.4□□□□□ -0.26
GTF3C1-202ENST00000561623 CHMP7Q8WUX9 453 aaPredicted RBP13.4□□□□□ -0.26
GTF3C1-202ENST00000561623 RRP7BPQ9NSQ0 103 aa13.4□□□□□ -0.26
GTF3C1-202ENST00000561623 TNNT2P45379 298 aaPredicted RBP13.4□□□□□ -0.26
GTF3C1-202ENST00000561623 PTMAP06454 111 aaKnown RBP13.4□□□□□ -0.26
GTF3C1-202ENST00000561623 CEP162Q5TB80 1403 aa13.39□□□□□ -0.27
GTF3C1-202ENST00000561623 GOLGA6L22H0YM25 854 aa13.39□□□□□ -0.27
GTF3C1-202ENST00000561623 RGS3P49796 1198 aa13.39□□□□□ -0.27
GTF3C1-202ENST00000561623 DNTTIP2Q5QJE6 756 aaKnown RBP13.39□□□□□ -0.27
GTF3C1-202ENST00000561623 KCNH8Q96L42 1107 aa13.38□□□□□ -0.27
GTF3C1-202ENST00000561623 TULP1O00294 542 aaPredicted RBP13.38□□□□□ -0.27
GTF3C1-202ENST00000561623 MYH16Q9H6N6 1097 aa13.38□□□□□ -0.27
GTF3C1-202ENST00000561623 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.37□□□□□ -0.27
GTF3C1-202ENST00000561623 SIN3AQ96ST3 1273 aa13.36□□□□□ -0.27
GTF3C1-202ENST00000561623 TSHZ2Q9NRE2 1034 aa13.35□□□□□ -0.27
GTF3C1-202ENST00000561623 MTUS2Q5JR59 1369 aa13.34□□□□□ -0.27
GTF3C1-202ENST00000561623 MLECQ14165 292 aa13.32□□□□□ -0.28
GTF3C1-202ENST00000561623 CCDC9Q9Y3X0 531 aaKnown RBP13.31□□□□□ -0.28
GTF3C1-202ENST00000561623 ZCCHC6Q5VYS8 1495 aaKnown RBP13.3□□□□□ -0.28
GTF3C1-202ENST00000561623 PLCB2Q00722 1185 aa13.27□□□□□ -0.29
GTF3C1-202ENST00000561623 SPRYD3Q8NCJ5 442 aa13.27□□□□□ -0.29
GTF3C1-202ENST00000561623 GOLGA3Q08378 1498 aa13.26□□□□□ -0.29
GTF3C1-202ENST00000561623 NEUROD2Q15784 382 aa13.26□□□□□ -0.29
GTF3C1-202ENST00000561623 RGL3Q3MIN7 710 aa13.25□□□□□ -0.29
GTF3C1-202ENST00000561623 AMER1Q5JTC6 1135 aaPredicted RBP13.25□□□□□ -0.29
GTF3C1-202ENST00000561623 FTSJ3Q8IY81 847 aaKnown RBP13.25□□□□□ -0.29
GTF3C1-202ENST00000561623 FRAT1Q92837 279 aaPredicted RBP13.25□□□□□ -0.29
GTF3C1-202ENST00000561623 ERCC6Q03468 1493 aa13.24□□□□□ -0.29
GTF3C1-202ENST00000561623 TSPY4P0CV99 314 aa13.24□□□□□ -0.29
GTF3C1-202ENST00000561623 TSPY10P0CW01 314 aa13.24□□□□□ -0.29
GTF3C1-202ENST00000561623 HSP90AB1P08238 724 aaKnown RBP13.23□□□□□ -0.29
GTF3C1-202ENST00000561623 CARD11Q9BXL7 1154 aa13.21□□□□□ -0.29
GTF3C1-202ENST00000561623 KNSTRNQ9Y448 316 aa13.21□□□□□ -0.3
GTF3C1-202ENST00000561623 L1TD1Q5T7N2 865 aaKnown RBP13.2□□□□□ -0.3
GTF3C1-202ENST00000561623 CDK11BP21127 795 aaKnown RBP13.2□□□□□ -0.3
GTF3C1-202ENST00000561623 CC2D1BQ5T0F9 858 aaKnown RBP13.2□□□□□ -0.3
GTF3C1-202ENST00000561623 ARID3AQ99856 593 aa13.2□□□□□ -0.3
GTF3C1-202ENST00000561623 CASC1Q6TDU7 716 aa13.19□□□□□ -0.3
GTF3C1-202ENST00000561623 CCER2I3L3R5 266 aa13.17□□□□□ -0.3
GTF3C1-202ENST00000561623 MSNP26038 577 aaKnown RBP13.17□□□□□ -0.3
GTF3C1-202ENST00000561623 TNIKQ9UKE5 1360 aa13.17□□□□□ -0.3
GTF3C1-202ENST00000561623 ZRSR1Q15695 479 aaKnown RBP13.17□□□□□ -0.3
GTF3C1-202ENST00000561623 GZF1Q9H116 711 aaPredicted RBP13.16□□□□□ -0.3
GTF3C1-202ENST00000561623 MEX3CQ5U5Q3 659 aaKnown RBP13.16□□□□□ -0.3
GTF3C1-202ENST00000561623 KLHL34Q8N239 644 aa13.16□□□□□ -0.3
GTF3C1-202ENST00000561623 HSCBQ8IWL3 235 aa13.15□□□□□ -0.3
GTF3C1-202ENST00000561623 CFAP53Q96M91 514 aa13.14□□□□□ -0.31
GTF3C1-202ENST00000561623 SLKQ9H2G2 1235 aaPredicted RBP13.12□□□□□ -0.31
GTF3C1-202ENST00000561623 EEA1Q15075 1411 aa13.12□□□□□ -0.31
GTF3C1-202ENST00000561623 TAOK2Q9UL54 1235 aa13.11□□□□□ -0.31
GTF3C1-202ENST00000561623 IPO9Q96P70 1041 aaKnown RBP13.11□□□□□ -0.31
GTF3C1-202ENST00000561623 RSF1Q96T23 1441 aaPredicted RBP13.1□□□□□ -0.31
GTF3C1-202ENST00000561623 PNNQ9H307 717 aaKnown RBP13.1□□□□□ -0.31
GTF3C1-202ENST00000561623 HSPA5P11021 654 aaKnown RBP13.09□□□□□ -0.31
GTF3C1-202ENST00000561623 CHAF1AQ13111 956 aaPredicted RBP13.08□□□□□ -0.32
GTF3C1-202ENST00000561623 MAPK8IP3Q9UPT6 1336 aa13.07□□□□□ -0.32
GTF3C1-202ENST00000561623 CCNB3Q8WWL7 1395 aa13.06□□□□□ -0.32
GTF3C1-202ENST00000561623 CDCA8Q53HL2 280 aa13.06□□□□□ -0.32
GTF3C1-202ENST00000561623 CEP164Q9UPV0 1460 aa13.06□□□□□ -0.32
GTF3C1-202ENST00000561623 TCERG1O14776 1098 aaKnown RBP13.04□□□□□ -0.32
GTF3C1-202ENST00000561623 KRI1Q8N9T8 703 aaKnown RBP13.04□□□□□ -0.32
GTF3C1-202ENST00000561623 RCAN3Q9UKA8 241 aa13.03□□□□□ -0.32
GTF3C1-202ENST00000561623 WRNQ14191 1432 aaPredicted RBP eCLIP13.03□□□□□ -0.32
GTF3C1-202ENST00000561623 GOLGA6L6A8MZA4 724 aa13.03□□□□□ -0.32
GTF3C1-202ENST00000561623 MSH5O43196 834 aa13.02□□□□□ -0.32
GTF3C1-202ENST00000561623 DRC7Q8IY82 874 aa13.02□□□□□ -0.32
GTF3C1-202ENST00000561623 U2SURPO15042 1029 aaKnown RBP13.02□□□□□ -0.33
GTF3C1-202ENST00000561623 GOLGA6L3A6NEY3 463 aa13.02□□□□□ -0.33
GTF3C1-202ENST00000561623 TMX4Q9H1E5 349 aaPredicted RBP13.02□□□□□ -0.33
GTF3C1-202ENST00000561623 CFDP1Q9UEE9 299 aaPredicted RBP13.01□□□□□ -0.33
GTF3C1-202ENST00000561623 NUDCQ9Y266 331 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms