RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 EIF4G3O43432 1585 aaKnown RBP20.05■□□□□ 0.8
SNX1-211ENST00000560829 CTTNBP2Q8WZ74 1663 aa20.04■□□□□ 0.8
SNX1-211ENST00000560829 EFCAB5A4FU69 1503 aa20.03■□□□□ 0.8
SNX1-211ENST00000560829 APLP2Q06481 763 aa19.99■□□□□ 0.79
SNX1-211ENST00000560829 SNAPC4Q5SXM2 1469 aa19.98■□□□□ 0.79
SNX1-211ENST00000560829 MAGI1Q96QZ7 1491 aaPredicted RBP19.97■□□□□ 0.79
SNX1-211ENST00000560829 SAMD9Q5K651 1589 aa19.93■□□□□ 0.78
SNX1-211ENST00000560829 MAP3K1Q13233 1512 aa19.9■□□□□ 0.78
SNX1-211ENST00000560829 GRIN2AQ12879 1464 aa19.9■□□□□ 0.78
SNX1-211ENST00000560829 FHOD3Q2V2M9 1422 aa19.9■□□□□ 0.78
SNX1-211ENST00000560829 SYNJ2O15056 1496 aa19.89■□□□□ 0.77
SNX1-211ENST00000560829 IQGAP2Q13576 1575 aa19.87■□□□□ 0.77
SNX1-211ENST00000560829 TTBK1Q5TCY1 1321 aaPredicted RBP19.87■□□□□ 0.77
SNX1-211ENST00000560829 FMN1Q68DA7 1419 aa19.86■□□□□ 0.77
SNX1-211ENST00000560829 KIAA0586Q9BVV6 1533 aa19.86■□□□□ 0.77
SNX1-211ENST00000560829 HRCP23327 699 aa19.85■□□□□ 0.77
SNX1-211ENST00000560829 P3H3Q8IVL6 736 aa19.84■□□□□ 0.77
SNX1-211ENST00000560829 CASKIN1Q8WXD9 1431 aa19.83■□□□□ 0.77
SNX1-211ENST00000560829 FYCO1Q9BQS8 1478 aa19.83■□□□□ 0.77
SNX1-211ENST00000560829 UGGT2Q9NYU1 1516 aa19.82■□□□□ 0.76
SNX1-211ENST00000560829 PCF11O94913 1555 aaKnown RBP19.82■□□□□ 0.76
SNX1-211ENST00000560829 KANK4Q5T7N3 995 aaPredicted RBP19.81■□□□□ 0.76
SNX1-211ENST00000560829 TIAM1Q13009 1591 aa19.81■□□□□ 0.76
SNX1-211ENST00000560829 CHMP7Q8WUX9 453 aaPredicted RBP19.8■□□□□ 0.76
SNX1-211ENST00000560829 NUP160Q12769 1436 aa19.78■□□□□ 0.76
SNX1-211ENST00000560829 CEP170Q5SW79 1584 aa19.75■□□□□ 0.75
SNX1-211ENST00000560829 LRRC9Q6ZRR7 1453 aa19.73■□□□□ 0.75
SNX1-211ENST00000560829 CFAP43Q8NDM7 1665 aa19.73■□□□□ 0.75
SNX1-211ENST00000560829 DISP1Q96F81 1524 aa19.71■□□□□ 0.75
SNX1-211ENST00000560829 FBLN2P98095 1184 aa19.69■□□□□ 0.74
SNX1-211ENST00000560829 RRBP1Q9P2E9 1410 aaKnown RBP19.68■□□□□ 0.74
SNX1-211ENST00000560829 KIAA0556O60303 1618 aa19.68■□□□□ 0.74
SNX1-211ENST00000560829 ATP1B4Q9UN42 357 aaPredicted RBP19.63■□□□□ 0.73
SNX1-211ENST00000560829 CCDC18Q5T9S5 1454 aa19.61■□□□□ 0.73
SNX1-211ENST00000560829 JPH4Q96JJ6 628 aa19.6■□□□□ 0.73
SNX1-211ENST00000560829 HECW1Q76N89 1606 aa19.6■□□□□ 0.73
SNX1-211ENST00000560829 CARMIL2Q6F5E8 1435 aa19.59■□□□□ 0.73
SNX1-211ENST00000560829 CCNB3Q8WWL7 1395 aa19.58■□□□□ 0.73
SNX1-211ENST00000560829 ZEB1P37275 1124 aaPredicted RBP19.57■□□□□ 0.72
SNX1-211ENST00000560829 PHLDB1Q86UU1 1377 aa19.56■□□□□ 0.72
SNX1-211ENST00000560829 LRRIQ1Q96JM4 1722 aa19.55■□□□□ 0.72
SNX1-211ENST00000560829 EPRSP07814 1512 aaKnown RBP19.54■□□□□ 0.72
SNX1-211ENST00000560829 MTUS2Q5JR59 1369 aa19.53■□□□□ 0.72
SNX1-211ENST00000560829 CHD1O14646 1710 aa19.53■□□□□ 0.72
SNX1-211ENST00000560829 EHBP1L1Q8N3D4 1523 aa19.52■□□□□ 0.72
SNX1-211ENST00000560829 HNRNPUL2Q1KMD3 747 aaKnown RBP19.52■□□□□ 0.72
SNX1-211ENST00000560829 NUP153P49790 1475 aaKnown RBP19.49■□□□□ 0.71
SNX1-211ENST00000560829 RAPGEF6Q8TEU7 1601 aa19.48■□□□□ 0.71
SNX1-211ENST00000560829 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.48■□□□□ 0.71
SNX1-211ENST00000560829 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.47■□□□□ 0.71
SNX1-211ENST00000560829 MAGI3Q5TCQ9 1506 aa19.47■□□□□ 0.71
SNX1-211ENST00000560829 ARHGEF11O15085 1522 aa19.46■□□□□ 0.71
SNX1-211ENST00000560829 SHROOM2Q13796 1616 aa19.45■□□□□ 0.7
SNX1-211ENST00000560829 PRG4Q92954 1404 aaPredicted RBP19.45■□□□□ 0.7
SNX1-211ENST00000560829 NCOA2Q15596 1464 aa19.45■□□□□ 0.7
SNX1-211ENST00000560829 CDK13Q14004 1512 aaKnown RBP19.44■□□□□ 0.7
SNX1-211ENST00000560829 CCER1Q8TC90 406 aaPredicted RBP19.43■□□□□ 0.7
SNX1-211ENST00000560829 PLB1Q6P1J6 1458 aa19.43■□□□□ 0.7
SNX1-211ENST00000560829 SUPT6HQ7KZ85 1726 aaKnown RBP19.43■□□□□ 0.7
SNX1-211ENST00000560829 FGD6Q6ZV73 1430 aa19.41■□□□□ 0.7
SNX1-211ENST00000560829 ABCA8O94911 1581 aa19.4■□□□□ 0.7
SNX1-211ENST00000560829 CLASP1Q7Z460 1538 aa19.4■□□□□ 0.7
SNX1-211ENST00000560829 MYOM3Q5VTT5 1437 aa19.4■□□□□ 0.7
SNX1-211ENST00000560829 PTPRGP23470 1445 aa19.36■□□□□ 0.69
SNX1-211ENST00000560829 CDK11AQ9UQ88 783 aaPredicted RBP19.36■□□□□ 0.69
SNX1-211ENST00000560829 FAM50AQ14320 339 aaKnown RBP19.33■□□□□ 0.69
SNX1-211ENST00000560829 TROQ12816 1431 aaPredicted RBP19.32■□□□□ 0.68
SNX1-211ENST00000560829 ARID3CA6NKF2 412 aa19.31■□□□□ 0.68
SNX1-211ENST00000560829 MIA2Q96PC5 1412 aa19.31■□□□□ 0.68
SNX1-211ENST00000560829 TCOF1Q13428 1488 aaKnown RBP19.3■□□□□ 0.68
SNX1-211ENST00000560829 ATP10BO94823 1461 aa19.28■□□□□ 0.68
SNX1-211ENST00000560829 ITGAEP38570 1179 aa19.28■□□□□ 0.68
SNX1-211ENST00000560829 UACAQ9BZF9 1416 aa19.27■□□□□ 0.68
SNX1-211ENST00000560829 ERCC6L2Q5T890 1561 aa19.27■□□□□ 0.67
SNX1-211ENST00000560829 PTPN23Q9H3S7 1636 aa19.26■□□□□ 0.67
SNX1-211ENST00000560829 ADCY10Q96PN6 1610 aa19.24■□□□□ 0.67
SNX1-211ENST00000560829 SETD5Q9C0A6 1442 aa19.24■□□□□ 0.67
SNX1-211ENST00000560829 DHX57Q6P158 1386 aaKnown RBP19.23■□□□□ 0.67
SNX1-211ENST00000560829 CLSPNQ9HAW4 1339 aa19.22■□□□□ 0.67
SNX1-211ENST00000560829 RAB3GAP2Q9H2M9 1393 aa19.22■□□□□ 0.67
SNX1-211ENST00000560829 PLEKHD1A6NEE1 506 aa19.2■□□□□ 0.66
SNX1-211ENST00000560829 ABCC2Q92887 1545 aa19.2■□□□□ 0.66
SNX1-211ENST00000560829 PTPRKQ15262 1439 aa19.2■□□□□ 0.66
SNX1-211ENST00000560829 UHRF1BP1LA0JNW5 1464 aa19.17■□□□□ 0.66
SNX1-211ENST00000560829 HFM1A2PYH4 1435 aa19.16■□□□□ 0.66
SNX1-211ENST00000560829 KIF14Q15058 1648 aa19.15■□□□□ 0.66
SNX1-211ENST00000560829 GPATCH8Q9UKJ3 1502 aaKnown RBP19.15■□□□□ 0.66
SNX1-211ENST00000560829 ABCC10Q5T3U5 1492 aa19.14■□□□□ 0.66
SNX1-211ENST00000560829 AKNAQ7Z591 1439 aa19.13■□□□□ 0.65
SNX1-211ENST00000560829 OSCARQ8IYS5 282 aa19.13■□□□□ 0.65
SNX1-211ENST00000560829 ITSN2Q9NZM3 1697 aa19.12■□□□□ 0.65
SNX1-211ENST00000560829 NAIPQ13075 1403 aa19.1■□□□□ 0.65
SNX1-211ENST00000560829 KDM5BQ9UGL1 1544 aa19.09■□□□□ 0.65
SNX1-211ENST00000560829 CFDP1Q9UEE9 299 aaPredicted RBP19.08■□□□□ 0.65
SNX1-211ENST00000560829 DAPK1P53355 1430 aa19.07■□□□□ 0.64
SNX1-211ENST00000560829 DNMT1P26358 1616 aaKnown RBP19.06■□□□□ 0.64
SNX1-211ENST00000560829 CAMSAP2Q08AD1 1489 aa19.06■□□□□ 0.64
SNX1-211ENST00000560829 ABCC5O15440 1437 aa19.06■□□□□ 0.64
SNX1-211ENST00000560829 ROCK1Q13464 1354 aa19.05■□□□□ 0.64
SNX1-211ENST00000560829 ZNF644Q9H582 1327 aaPredicted RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms