RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CARMIL1Q5VZK9 1371 aa17.61■□□□□ 0.41
LDLR-214ENST00000560628 RUSC2Q8N2Y8 1516 aa17.57■□□□□ 0.4
LDLR-214ENST00000560628 KIAA0586Q9BVV6 1533 aa17.57■□□□□ 0.4
LDLR-214ENST00000560628 CUL7Q14999 1698 aa17.55■□□□□ 0.4
LDLR-214ENST00000560628 TTBK1Q5TCY1 1321 aaPredicted RBP17.53■□□□□ 0.4
LDLR-214ENST00000560628 NPM1P06748 294 aaKnown RBP eCLIP17.52■□□□□ 0.4
LDLR-214ENST00000560628 PTPRGP23470 1445 aa17.44■□□□□ 0.38
LDLR-214ENST00000560628 FAM69CQ0P6D2 419 aa17.43■□□□□ 0.38
LDLR-214ENST00000560628 RAPGEF2Q9Y4G8 1499 aa17.42■□□□□ 0.38
LDLR-214ENST00000560628 CARMIL2Q6F5E8 1435 aa17.41■□□□□ 0.38
LDLR-214ENST00000560628 TNIKQ9UKE5 1360 aa17.4■□□□□ 0.38
LDLR-214ENST00000560628 ADCY10Q96PN6 1610 aa17.39■□□□□ 0.38
LDLR-214ENST00000560628 IQGAP2Q13576 1575 aa17.37■□□□□ 0.37
LDLR-214ENST00000560628 ABCC10Q5T3U5 1492 aa17.35■□□□□ 0.37
LDLR-214ENST00000560628 KIF13AQ9H1H9 1805 aa17.33■□□□□ 0.37
LDLR-214ENST00000560628 MAPKBP1O60336 1514 aa17.32■□□□□ 0.36
LDLR-214ENST00000560628 DISP1Q96F81 1524 aa17.32■□□□□ 0.36
LDLR-214ENST00000560628 UGGT2Q9NYU1 1516 aa17.28■□□□□ 0.36
LDLR-214ENST00000560628 AEBP2Q6ZN18 517 aaPredicted RBP17.28■□□□□ 0.36
LDLR-214ENST00000560628 UACAQ9BZF9 1416 aa17.28■□□□□ 0.36
LDLR-214ENST00000560628 ABCC2Q92887 1545 aa17.26■□□□□ 0.35
LDLR-214ENST00000560628 DIP2BQ9P265 1576 aa17.26■□□□□ 0.35
LDLR-214ENST00000560628 PRXQ9BXM0 1461 aa17.25■□□□□ 0.35
LDLR-214ENST00000560628 CSRNP3Q8WYN3 585 aa17.25■□□□□ 0.35
LDLR-214ENST00000560628 UHRF1BP1LA0JNW5 1464 aa17.24■□□□□ 0.35
LDLR-214ENST00000560628 ASXL2Q76L83 1435 aa17.23■□□□□ 0.35
LDLR-214ENST00000560628 KIAA0556O60303 1618 aa17.21■□□□□ 0.35
LDLR-214ENST00000560628 P3H3Q8IVL6 736 aa17.2■□□□□ 0.34
LDLR-214ENST00000560628 FAM9AQ8IZU1 332 aaPredicted RBP17.2■□□□□ 0.34
LDLR-214ENST00000560628 PLB1Q6P1J6 1458 aa17.19■□□□□ 0.34
LDLR-214ENST00000560628 TSPOAP1O95153 1857 aa17.18■□□□□ 0.34
LDLR-214ENST00000560628 GOLGA3Q08378 1498 aa17.17■□□□□ 0.34
LDLR-214ENST00000560628 CTTNBP2Q8WZ74 1663 aa17.16■□□□□ 0.34
LDLR-214ENST00000560628 KDM5BQ9UGL1 1544 aa17.16■□□□□ 0.34
LDLR-214ENST00000560628 RANGAP1P46060 587 aaPredicted RBP17.14■□□□□ 0.33
LDLR-214ENST00000560628 ARID3CA6NKF2 412 aa17.12■□□□□ 0.33
LDLR-214ENST00000560628 KCNH8Q96L42 1107 aa17.11■□□□□ 0.33
LDLR-214ENST00000560628 ZCCHC11Q5TAX3 1644 aaKnown RBP17.1■□□□□ 0.33
LDLR-214ENST00000560628 EPRSP07814 1512 aaKnown RBP17.1■□□□□ 0.33
LDLR-214ENST00000560628 GLI2P10070 1586 aa17.1■□□□□ 0.33
LDLR-214ENST00000560628 KDM6BO15054 1643 aa17.1■□□□□ 0.33
LDLR-214ENST00000560628 EEA1Q15075 1411 aa17.08■□□□□ 0.32
LDLR-214ENST00000560628 ABCA8O94911 1581 aa17.06■□□□□ 0.32
LDLR-214ENST00000560628 EHMT2Q96KQ7 1210 aa17.06■□□□□ 0.32
LDLR-214ENST00000560628 WDR7Q9Y4E6 1490 aa17.05■□□□□ 0.32
LDLR-214ENST00000560628 CHIC1Q5VXU3 224 aa17.05■□□□□ 0.32
LDLR-214ENST00000560628 PPRC1Q5VV67 1664 aaKnown RBP17.03■□□□□ 0.32
LDLR-214ENST00000560628 COL17A1Q9UMD9 1497 aaPredicted RBP17■□□□□ 0.31
LDLR-214ENST00000560628 KDM4FA0A1W2PPD8 638 aa17■□□□□ 0.31
LDLR-214ENST00000560628 MAP3K4Q9Y6R4 1608 aa16.99■□□□□ 0.31
LDLR-214ENST00000560628 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.99■□□□□ 0.31
LDLR-214ENST00000560628 HNRNPUL2Q1KMD3 747 aaKnown RBP16.99■□□□□ 0.31
LDLR-214ENST00000560628 ATP10BO94823 1461 aa16.99■□□□□ 0.31
LDLR-214ENST00000560628 CD109Q6YHK3 1445 aa16.98■□□□□ 0.31
LDLR-214ENST00000560628 TEX14Q8IWB6 1497 aa16.98■□□□□ 0.31
LDLR-214ENST00000560628 UBTFP17480 764 aaKnown RBP16.96■□□□□ 0.31
LDLR-214ENST00000560628 FHOD3Q2V2M9 1422 aa16.96■□□□□ 0.3
LDLR-214ENST00000560628 SAMD9Q5K651 1589 aa16.95■□□□□ 0.3
LDLR-214ENST00000560628 MAGI3Q5TCQ9 1506 aa16.91■□□□□ 0.3
LDLR-214ENST00000560628 KIF21BO75037 1637 aa16.89■□□□□ 0.29
LDLR-214ENST00000560628 RAPGEF6Q8TEU7 1601 aa16.89■□□□□ 0.29
LDLR-214ENST00000560628 NUP153P49790 1475 aaKnown RBP16.87■□□□□ 0.29
LDLR-214ENST00000560628 PLEKHD1A6NEE1 506 aa16.87■□□□□ 0.29
LDLR-214ENST00000560628 CFAP43Q8NDM7 1665 aa16.87■□□□□ 0.29
LDLR-214ENST00000560628 ATP1B4Q9UN42 357 aaPredicted RBP16.85■□□□□ 0.29
LDLR-214ENST00000560628 EFCAB5A4FU69 1503 aa16.81■□□□□ 0.28
LDLR-214ENST00000560628 ADGRL1O94910 1474 aa16.81■□□□□ 0.28
LDLR-214ENST00000560628 RAPGEF3O95398 923 aa16.8■□□□□ 0.28
LDLR-214ENST00000560628 ABCA9Q8IUA7 1624 aa16.78■□□□□ 0.28
LDLR-214ENST00000560628 ARAP3Q8WWN8 1544 aa16.77■□□□□ 0.28
LDLR-214ENST00000560628 PHLDB1Q86UU1 1377 aa16.77■□□□□ 0.27
LDLR-214ENST00000560628 ARHGAP35Q9NRY4 1499 aa16.75■□□□□ 0.27
LDLR-214ENST00000560628 CDK13Q14004 1512 aaKnown RBP16.74■□□□□ 0.27
LDLR-214ENST00000560628 FMN1Q68DA7 1419 aa16.72■□□□□ 0.27
LDLR-214ENST00000560628 NEO1Q92859 1461 aa16.72■□□□□ 0.27
LDLR-214ENST00000560628 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.69■□□□□ 0.261e-11■□□□□ 11.1
LDLR-214ENST00000560628 CDK11AQ9UQ88 783 aaPredicted RBP16.68■□□□□ 0.26
LDLR-214ENST00000560628 AKNAQ7Z591 1439 aa16.68■□□□□ 0.26
LDLR-214ENST00000560628 FANCAO15360 1455 aa16.66■□□□□ 0.26
LDLR-214ENST00000560628 ARID4BQ4LE39 1312 aaPredicted RBP16.66■□□□□ 0.26
LDLR-214ENST00000560628 DENND4BO75064 1496 aaPredicted RBP16.64■□□□□ 0.25
LDLR-214ENST00000560628 TTC37Q6PGP7 1564 aa16.64■□□□□ 0.25
LDLR-214ENST00000560628 HECW1Q76N89 1606 aa16.63■□□□□ 0.25
LDLR-214ENST00000560628 PLCH2O75038 1416 aa16.62■□□□□ 0.25
LDLR-214ENST00000560628 FRMPD1Q5SYB0 1578 aa16.61■□□□□ 0.25
LDLR-214ENST00000560628 EFCAB2Q5VUJ9 269 aa16.61■□□□□ 0.25
LDLR-214ENST00000560628 SCAPERQ9BY12 1400 aa16.59■□□□□ 0.25
LDLR-214ENST00000560628 TROQ12816 1431 aaPredicted RBP16.58■□□□□ 0.24
LDLR-214ENST00000560628 CASKIN1Q8WXD9 1431 aa16.56■□□□□ 0.24
LDLR-214ENST00000560628 CFAP74Q9C0B2 1584 aa16.55■□□□□ 0.24
LDLR-214ENST00000560628 CLIP1P30622 1438 aa16.55■□□□□ 0.24
LDLR-214ENST00000560628 YEATS2Q9ULM3 1422 aa16.54■□□□□ 0.24
LDLR-214ENST00000560628 RICTORQ6R327 1708 aa16.54■□□□□ 0.24
LDLR-214ENST00000560628 KIF14Q15058 1648 aa16.54■□□□□ 0.24
LDLR-214ENST00000560628 MLECQ14165 292 aa16.52■□□□□ 0.24
LDLR-214ENST00000560628 AFAP1Q8N556 730 aa16.52■□□□□ 0.24
LDLR-214ENST00000560628 LRRIQ1Q96JM4 1722 aa16.52■□□□□ 0.24
LDLR-214ENST00000560628 PCF11O94913 1555 aaKnown RBP16.51■□□□□ 0.23
LDLR-214ENST00000560628 HECW2Q9P2P5 1572 aa16.51■□□□□ 0.23
LDLR-214ENST00000560628 PTPRMP28827 1452 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms