RNA–Protein interactions for RNA: ENST00000560508.1

AP4E1-203, Transcript of adaptor related protein complex 4 subunit epsilon 1, humanhuman

TSL 1 (best) BASIC

Gene AP4E1, Length 6,653 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1-203ENST00000560508 FKBP8Q14318 412 aa9.39□□□□□ -0.91
AP4E1-203ENST00000560508 CUX2O14529 1486 aa9.38□□□□□ -0.91
AP4E1-203ENST00000560508 SOGA1O94964 1423 aa9.38□□□□□ -0.91
AP4E1-203ENST00000560508 FAM9BQ8IZU0 186 aa9.37□□□□□ -0.91
AP4E1-203ENST00000560508 SLC24A1O60721 1099 aa9.36□□□□□ -0.91
AP4E1-203ENST00000560508 RRP7BPQ9NSQ0 103 aa9.36□□□□□ -0.91
AP4E1-203ENST00000560508 PLEKHD1A6NEE1 506 aa9.34□□□□□ -0.91
AP4E1-203ENST00000560508 EIF4G2P78344 907 aaKnown RBP eCLIP9.34□□□□□ -0.91
AP4E1-203ENST00000560508 TMC1Q8TDI8 760 aa9.34□□□□□ -0.91
AP4E1-203ENST00000560508 CARMIL1Q5VZK9 1371 aa9.34□□□□□ -0.91
AP4E1-203ENST00000560508 KDM2AQ9Y2K7 1162 aa9.33□□□□□ -0.92
AP4E1-203ENST00000560508 MIER1Q8N108 512 aa9.32□□□□□ -0.92
AP4E1-203ENST00000560508 WDR43Q15061 677 aaKnown RBP eCLIP9.32□□□□□ -0.92
AP4E1-203ENST00000560508 VPS8Q8N3P4 1428 aa9.32□□□□□ -0.92
AP4E1-203ENST00000560508 ARHGAP35Q9NRY4 1499 aa9.32□□□□□ -0.92
AP4E1-203ENST00000560508 CCNB3Q8WWL7 1395 aa9.31□□□□□ -0.92
AP4E1-203ENST00000560508 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.31□□□□□ -0.92
AP4E1-203ENST00000560508 MRS2Q9HD23 443 aa9.3□□□□□ -0.92
AP4E1-203ENST00000560508 CFDP1Q9UEE9 299 aaPredicted RBP9.29□□□□□ -0.92
AP4E1-203ENST00000560508 NPM2Q86SE8 214 aaKnown RBP9.28□□□□□ -0.92
AP4E1-203ENST00000560508 PDS5BQ9NTI5 1447 aa9.28□□□□□ -0.92
AP4E1-203ENST00000560508 KCNH8Q96L42 1107 aa9.26□□□□□ -0.93
AP4E1-203ENST00000560508 UPF2Q9HAU5 1272 aaKnown RBP9.26□□□□□ -0.93
AP4E1-203ENST00000560508 BCL11AQ9H165 835 aa9.25□□□□□ -0.93
AP4E1-203ENST00000560508 HIRIP3Q9BW71 556 aaPredicted RBP9.25□□□□□ -0.93
AP4E1-203ENST00000560508 CCDC136Q96JN2 1154 aa9.25□□□□□ -0.93
AP4E1-203ENST00000560508 SETD5Q9C0A6 1442 aa9.25□□□□□ -0.93
AP4E1-203ENST00000560508 ATAD2BQ9ULI0 1458 aa9.25□□□□□ -0.93
AP4E1-203ENST00000560508 SALL2Q9Y467 1007 aaPredicted RBP9.24□□□□□ -0.93
AP4E1-203ENST00000560508 SCAF1Q9H7N4 1312 aaKnown RBP9.24□□□□□ -0.93
AP4E1-203ENST00000560508 FMN1Q68DA7 1419 aa9.23□□□□□ -0.93
AP4E1-203ENST00000560508 RAPGEF2Q9Y4G8 1499 aa9.22□□□□□ -0.93
AP4E1-203ENST00000560508 CDCA8Q53HL2 280 aa9.22□□□□□ -0.93
AP4E1-203ENST00000560508 PLPPR3Q6T4P5 718 aa9.21□□□□□ -0.94
AP4E1-203ENST00000560508 CARMIL2Q6F5E8 1435 aa9.2□□□□□ -0.94
AP4E1-203ENST00000560508 CARD11Q9BXL7 1154 aa9.19□□□□□ -0.94
AP4E1-203ENST00000560508 TIMELESSQ9UNS1 1208 aa9.19□□□□□ -0.94
AP4E1-203ENST00000560508 KANK1Q14678 1352 aa9.18□□□□□ -0.94
AP4E1-203ENST00000560508 CADPSQ9ULU8 1353 aa9.18□□□□□ -0.94
AP4E1-203ENST00000560508 RGL3Q3MIN7 710 aa9.18□□□□□ -0.94
AP4E1-203ENST00000560508 HSP90AA1P07900 732 aaKnown RBP9.18□□□□□ -0.94
AP4E1-203ENST00000560508 SIN3AQ96ST3 1273 aa9.17□□□□□ -0.94
AP4E1-203ENST00000560508 PPP1R15AO75807 674 aaPredicted RBP9.17□□□□□ -0.94
AP4E1-203ENST00000560508 KNSTRNQ9Y448 316 aa9.16□□□□□ -0.94
AP4E1-203ENST00000560508 CFAP53Q96M91 514 aa9.16□□□□□ -0.94
AP4E1-203ENST00000560508 IRX6P78412 446 aaPredicted RBP9.15□□□□□ -0.94
AP4E1-203ENST00000560508 ANP32BQ92688 251 aaKnown RBP9.15□□□□□ -0.94
AP4E1-203ENST00000560508 MYH16Q9H6N6 1097 aa9.15□□□□□ -0.95
AP4E1-203ENST00000560508 FANCD2Q9BXW9 1451 aa9.14□□□□□ -0.95
AP4E1-203ENST00000560508 CCDC18Q5T9S5 1454 aa9.13□□□□□ -0.95
AP4E1-203ENST00000560508 KANK4Q5T7N3 995 aaPredicted RBP9.13□□□□□ -0.95
AP4E1-203ENST00000560508 RAB3GAP2Q9H2M9 1393 aa9.13□□□□□ -0.95
AP4E1-203ENST00000560508 DDRGK1Q96HY6 314 aa9.13□□□□□ -0.95
AP4E1-203ENST00000560508 KIF21BO75037 1637 aa9.12□□□□□ -0.95
AP4E1-203ENST00000560508 FHOD3Q2V2M9 1422 aa9.11□□□□□ -0.95
AP4E1-203ENST00000560508 TDRD9Q8NDG6 1382 aaKnown RBP9.1□□□□□ -0.95
AP4E1-203ENST00000560508 TMF1P82094 1093 aa9.1□□□□□ -0.95
AP4E1-203ENST00000560508 RUSC2Q8N2Y8 1516 aa9.1□□□□□ -0.95
AP4E1-203ENST00000560508 CCER2I3L3R5 266 aa9.09□□□□□ -0.95
AP4E1-203ENST00000560508 PRDM2Q13029 1718 aa9.09□□□□□ -0.95
AP4E1-203ENST00000560508 ANKRD30AQ9BXX3 1397 aa9.09□□□□□ -0.95
AP4E1-203ENST00000560508 SUPT16HQ9Y5B9 1047 aaKnown RBP9.08□□□□□ -0.96
AP4E1-203ENST00000560508 ARID4BQ4LE39 1312 aaPredicted RBP9.08□□□□□ -0.96
AP4E1-203ENST00000560508 DCAF11Q8TEB1 546 aa9.08□□□□□ -0.96
AP4E1-203ENST00000560508 CUX1P39880 1505 aa9.07□□□□□ -0.96
AP4E1-203ENST00000560508 BECN1Q14457 450 aa9.07□□□□□ -0.96
AP4E1-203ENST00000560508 NBR1Q14596 966 aa9.07□□□□□ -0.96
AP4E1-203ENST00000560508 FGD5Q6ZNL6 1462 aa9.07□□□□□ -0.96
AP4E1-203ENST00000560508 HSPA5P11021 654 aaKnown RBP9.06□□□□□ -0.96
AP4E1-203ENST00000560508 PPP4R2Q9NY27 417 aa9.06□□□□□ -0.96
AP4E1-203ENST00000560508 PNNQ9H307 717 aaKnown RBP9.06□□□□□ -0.96
AP4E1-203ENST00000560508 SENP3Q9H4L4 574 aaPredicted RBP9.06□□□□□ -0.96
AP4E1-203ENST00000560508 CC2D1BQ5T0F9 858 aaKnown RBP9.06□□□□□ -0.96
AP4E1-203ENST00000560508 EIF5BO60841 1220 aaKnown RBP9.05□□□□□ -0.96
AP4E1-203ENST00000560508 NUDCQ9Y266 331 aa9.05□□□□□ -0.96
AP4E1-203ENST00000560508 POGKQ9P215 609 aa9.05□□□□□ -0.96
AP4E1-203ENST00000560508 MAPK8IP3Q9UPT6 1336 aa9.05□□□□□ -0.96
AP4E1-203ENST00000560508 C14orf37Q86TY3 774 aa9.05□□□□□ -0.96
AP4E1-203ENST00000560508 MPHOSPH9Q99550 1183 aa9.05□□□□□ -0.96
AP4E1-203ENST00000560508 ZBTB7CA1YPR0 619 aa9.04□□□□□ -0.96
AP4E1-203ENST00000560508 ERICH3Q5RHP9 1530 aa9.04□□□□□ -0.96
AP4E1-203ENST00000560508 ROCK2O75116 1388 aaKnown RBP9.04□□□□□ -0.96
AP4E1-203ENST00000560508 PKD2Q13563 968 aa9.04□□□□□ -0.96
AP4E1-203ENST00000560508 FTSJ3Q8IY81 847 aaKnown RBP9.04□□□□□ -0.96
AP4E1-203ENST00000560508 KTN1Q86UP2 1357 aaKnown RBP9.03□□□□□ -0.96
AP4E1-203ENST00000560508 GAPVD1Q14C86 1478 aa9.02□□□□□ -0.97
AP4E1-203ENST00000560508 SYNJ1O43426 1573 aa9.02□□□□□ -0.97
AP4E1-203ENST00000560508 EIF3AQ14152 1382 aaKnown RBP9.02□□□□□ -0.97
AP4E1-203ENST00000560508 CASC1Q6TDU7 716 aa9.02□□□□□ -0.97
AP4E1-203ENST00000560508 TOP2BQ02880 1626 aa9.02□□□□□ -0.97
AP4E1-203ENST00000560508 NCAPD3P42695 1498 aa9.01□□□□□ -0.97
AP4E1-203ENST00000560508 NUP155O75694 1391 aa9.01□□□□□ -0.97
AP4E1-203ENST00000560508 MS4A1P11836 297 aa9.01□□□□□ -0.97
AP4E1-203ENST00000560508 HDGFP51858 240 aaKnown RBP9.01□□□□□ -0.97
AP4E1-203ENST00000560508 CHMP4BQ9H444 224 aaKnown RBP9□□□□□ -0.97
AP4E1-203ENST00000560508 PPM1GO15355 546 aaPredicted RBP9□□□□□ -0.97
AP4E1-203ENST00000560508 FOXD1Q16676 465 aa9□□□□□ -0.97
AP4E1-203ENST00000560508 HMGXB3Q12766 1538 aa9□□□□□ -0.97
AP4E1-203ENST00000560508 RSPH4AQ5TD94 716 aa8.99□□□□□ -0.97
AP4E1-203ENST00000560508 EFCAB2Q5VUJ9 269 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms