RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 SHROOM2Q13796 1616 aa21.54■■□□□ 1.04
SNX1-209ENST00000559961 CARMIL1Q5VZK9 1371 aa21.52■■□□□ 1.04
SNX1-209ENST00000559961 KIAA0586Q9BVV6 1533 aa21.5■■□□□ 1.03
SNX1-209ENST00000559961 CUL7Q14999 1698 aa21.48■■□□□ 1.03
SNX1-209ENST00000559961 RUSC2Q8N2Y8 1516 aa21.45■■□□□ 1.02
SNX1-209ENST00000559961 TTBK1Q5TCY1 1321 aaPredicted RBP21.41■■□□□ 1.02
SNX1-209ENST00000559961 CARMIL2Q6F5E8 1435 aa21.4■■□□□ 1.02
SNX1-209ENST00000559961 FAM69CQ0P6D2 419 aa21.37■■□□□ 1.01
SNX1-209ENST00000559961 PTPRGP23470 1445 aa21.36■■□□□ 1.01
SNX1-209ENST00000559961 AEBP2Q6ZN18 517 aaPredicted RBP21.35■■□□□ 1.01
SNX1-209ENST00000559961 TNIKQ9UKE5 1360 aa21.31■■□□□ 1
SNX1-209ENST00000559961 RAPGEF2Q9Y4G8 1499 aa21.31■■□□□ 1
SNX1-209ENST00000559961 FAM9AQ8IZU1 332 aaPredicted RBP21.27■■□□□ 1
SNX1-209ENST00000559961 IQGAP2Q13576 1575 aa21.25■□□□□ 0.99
SNX1-209ENST00000559961 ABCC10Q5T3U5 1492 aa21.24■□□□□ 0.99
SNX1-209ENST00000559961 MAPKBP1O60336 1514 aa21.22■□□□□ 0.99
SNX1-209ENST00000559961 ADCY10Q96PN6 1610 aa21.19■□□□□ 0.98
SNX1-209ENST00000559961 UACAQ9BZF9 1416 aa21.15■□□□□ 0.98
SNX1-209ENST00000559961 ABCC2Q92887 1545 aa21.14■□□□□ 0.97
SNX1-209ENST00000559961 PLB1Q6P1J6 1458 aa21.11■□□□□ 0.97
SNX1-209ENST00000559961 KIF13AQ9H1H9 1805 aa21.11■□□□□ 0.97
SNX1-209ENST00000559961 DISP1Q96F81 1524 aa21.1■□□□□ 0.97
SNX1-209ENST00000559961 UGGT2Q9NYU1 1516 aa21.1■□□□□ 0.97
SNX1-209ENST00000559961 UHRF1BP1LA0JNW5 1464 aa21.09■□□□□ 0.97
SNX1-209ENST00000559961 GOLGA3Q08378 1498 aa21.09■□□□□ 0.97
SNX1-209ENST00000559961 DIP2BQ9P265 1576 aa21.09■□□□□ 0.97
SNX1-209ENST00000559961 ASXL2Q76L83 1435 aa21.07■□□□□ 0.96
SNX1-209ENST00000559961 CSRNP3Q8WYN3 585 aa21.07■□□□□ 0.96
SNX1-209ENST00000559961 PRXQ9BXM0 1461 aa21.02■□□□□ 0.96
SNX1-209ENST00000559961 KIAA0556O60303 1618 aa21.01■□□□□ 0.95
SNX1-209ENST00000559961 KDM5BQ9UGL1 1544 aa20.98■□□□□ 0.95
SNX1-209ENST00000559961 KDM6BO15054 1643 aa20.96■□□□□ 0.95
SNX1-209ENST00000559961 EEA1Q15075 1411 aa20.95■□□□□ 0.95
SNX1-209ENST00000559961 P3H3Q8IVL6 736 aa20.95■□□□□ 0.94
SNX1-209ENST00000559961 CTTNBP2Q8WZ74 1663 aa20.94■□□□□ 0.94
SNX1-209ENST00000559961 TSPOAP1O95153 1857 aa20.93■□□□□ 0.94
SNX1-209ENST00000559961 KCNH8Q96L42 1107 aa20.93■□□□□ 0.94
SNX1-209ENST00000559961 GLI2P10070 1586 aa20.93■□□□□ 0.94
SNX1-209ENST00000559961 EPRSP07814 1512 aaKnown RBP20.91■□□□□ 0.94
SNX1-209ENST00000559961 TEX14Q8IWB6 1497 aa20.9■□□□□ 0.94
SNX1-209ENST00000559961 RANGAP1P46060 587 aaPredicted RBP20.89■□□□□ 0.93
SNX1-209ENST00000559961 WDR7Q9Y4E6 1490 aa20.88■□□□□ 0.93
SNX1-209ENST00000559961 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.87■□□□□ 0.93
SNX1-209ENST00000559961 HNRNPUL2Q1KMD3 747 aaKnown RBP20.87■□□□□ 0.93
SNX1-209ENST00000559961 ZCCHC11Q5TAX3 1644 aaKnown RBP20.86■□□□□ 0.93
SNX1-209ENST00000559961 ARID3CA6NKF2 412 aa20.84■□□□□ 0.93
SNX1-209ENST00000559961 CD109Q6YHK3 1445 aa20.81■□□□□ 0.92
SNX1-209ENST00000559961 ABCA8O94911 1581 aa20.8■□□□□ 0.92
SNX1-209ENST00000559961 UBTFP17480 764 aaKnown RBP20.76■□□□□ 0.91
SNX1-209ENST00000559961 MAP3K4Q9Y6R4 1608 aa20.75■□□□□ 0.91
SNX1-209ENST00000559961 KDM4FA0A1W2PPD8 638 aa20.73■□□□□ 0.91
SNX1-209ENST00000559961 ATP10BO94823 1461 aa20.71■□□□□ 0.91
SNX1-209ENST00000559961 EHMT2Q96KQ7 1210 aa20.71■□□□□ 0.91
SNX1-209ENST00000559961 MAGI3Q5TCQ9 1506 aa20.7■□□□□ 0.9
SNX1-209ENST00000559961 PLEKHD1A6NEE1 506 aa20.7■□□□□ 0.9
SNX1-209ENST00000559961 CHIC1Q5VXU3 224 aa20.7■□□□□ 0.9
SNX1-209ENST00000559961 PPRC1Q5VV67 1664 aaKnown RBP20.7■□□□□ 0.9
SNX1-209ENST00000559961 COL17A1Q9UMD9 1497 aaPredicted RBP20.67■□□□□ 0.9
SNX1-209ENST00000559961 SAMD9Q5K651 1589 aa20.67■□□□□ 0.9
SNX1-209ENST00000559961 FHOD3Q2V2M9 1422 aa20.66■□□□□ 0.9
SNX1-209ENST00000559961 CFAP43Q8NDM7 1665 aa20.66■□□□□ 0.9
SNX1-209ENST00000559961 PHLDB1Q86UU1 1377 aa20.65■□□□□ 0.9
SNX1-209ENST00000559961 ATP1B4Q9UN42 357 aaPredicted RBP20.64■□□□□ 0.89
SNX1-209ENST00000559961 RAPGEF6Q8TEU7 1601 aa20.64■□□□□ 0.89
SNX1-209ENST00000559961 KIF21BO75037 1637 aa20.62■□□□□ 0.89
SNX1-209ENST00000559961 EFCAB5A4FU69 1503 aa20.6■□□□□ 0.89
SNX1-209ENST00000559961 ADGRL1O94910 1474 aa20.58■□□□□ 0.89
SNX1-209ENST00000559961 CDK11AQ9UQ88 783 aaPredicted RBP20.57■□□□□ 0.88
SNX1-209ENST00000559961 NUP153P49790 1475 aaKnown RBP20.56■□□□□ 0.88
SNX1-209ENST00000559961 ARAP3Q8WWN8 1544 aa20.53■□□□□ 0.88
SNX1-209ENST00000559961 FMN1Q68DA7 1419 aa20.52■□□□□ 0.87
SNX1-209ENST00000559961 NEO1Q92859 1461 aa20.51■□□□□ 0.87
SNX1-209ENST00000559961 RAPGEF3O95398 923 aa20.51■□□□□ 0.87
SNX1-209ENST00000559961 ABCA9Q8IUA7 1624 aa20.51■□□□□ 0.87
SNX1-209ENST00000559961 ARID4BQ4LE39 1312 aaPredicted RBP20.48■□□□□ 0.87
SNX1-209ENST00000559961 AKNAQ7Z591 1439 aa20.41■□□□□ 0.86
SNX1-209ENST00000559961 DENND4BO75064 1496 aaPredicted RBP20.41■□□□□ 0.86
SNX1-209ENST00000559961 FANCAO15360 1455 aa20.4■□□□□ 0.86
SNX1-209ENST00000559961 EFCAB2Q5VUJ9 269 aa20.39■□□□□ 0.85
SNX1-209ENST00000559961 ARHGAP35Q9NRY4 1499 aa20.38■□□□□ 0.85
SNX1-209ENST00000559961 CDK13Q14004 1512 aaKnown RBP20.37■□□□□ 0.85
SNX1-209ENST00000559961 CLIP1P30622 1438 aa20.36■□□□□ 0.85
SNX1-209ENST00000559961 HECW1Q76N89 1606 aa20.36■□□□□ 0.85
SNX1-209ENST00000559961 CFAP74Q9C0B2 1584 aa20.35■□□□□ 0.85
SNX1-209ENST00000559961 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.35■□□□□ 0.85
SNX1-209ENST00000559961 MYT1LQ9UL68 1186 aa20.32■□□□□ 0.84
SNX1-209ENST00000559961 PLCH2O75038 1416 aa20.32■□□□□ 0.84
SNX1-209ENST00000559961 POGZQ7Z3K3 1410 aa20.3■□□□□ 0.84
SNX1-209ENST00000559961 SCAPERQ9BY12 1400 aa20.29■□□□□ 0.84
SNX1-209ENST00000559961 TROQ12816 1431 aaPredicted RBP20.27■□□□□ 0.84
SNX1-209ENST00000559961 TTC37Q6PGP7 1564 aa20.26■□□□□ 0.83
SNX1-209ENST00000559961 MAGI2Q86UL8 1455 aa20.25■□□□□ 0.83
SNX1-209ENST00000559961 CASKIN1Q8WXD9 1431 aa20.24■□□□□ 0.83
SNX1-209ENST00000559961 CCDC18Q5T9S5 1454 aa20.24■□□□□ 0.83
SNX1-209ENST00000559961 KIF14Q15058 1648 aa20.23■□□□□ 0.83
SNX1-209ENST00000559961 MLECQ14165 292 aa20.21■□□□□ 0.83
SNX1-209ENST00000559961 PTPRMP28827 1452 aa20.21■□□□□ 0.83
SNX1-209ENST00000559961 ARHGAP5Q13017 1502 aa20.21■□□□□ 0.83
SNX1-209ENST00000559961 ZFYVE16Q7Z3T8 1539 aa20.21■□□□□ 0.83
SNX1-209ENST00000559961 FRMPD1Q5SYB0 1578 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms