RNA–Protein interactions for RNA: ENST00000559152.5

CLPX-204, Transcript of caseinolytic mitochondrial matrix peptidase chaperone subunit, humanhuman

TSL 1 (best)

Gene CLPX, Length 2,228 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPX-204ENST00000559152 MRC2Q9UBG0 1479 aa16.94■□□□□ 0.3
CLPX-204ENST00000559152 RRBP1Q9P2E9 1410 aaKnown RBP16.93■□□□□ 0.3
CLPX-204ENST00000559152 CTTNBP2Q8WZ74 1663 aa16.92■□□□□ 0.3
CLPX-204ENST00000559152 TARBP1Q13395 1621 aaKnown RBP16.92■□□□□ 0.3
CLPX-204ENST00000559152 TIAM1Q13009 1591 aa16.91■□□□□ 0.3
CLPX-204ENST00000559152 AQRO60306 1485 aaKnown RBP eCLIP16.89■□□□□ 0.295e-10■■□□□ 14.2
CLPX-204ENST00000559152 FMN1Q68DA7 1419 aa16.86■□□□□ 0.29
CLPX-204ENST00000559152 THOC2Q8NI27 1593 aaKnown RBP16.86■□□□□ 0.29
CLPX-204ENST00000559152 FYCO1Q9BQS8 1478 aa16.86■□□□□ 0.29
CLPX-204ENST00000559152 CCNB3Q8WWL7 1395 aa16.85■□□□□ 0.29
CLPX-204ENST00000559152 CASKIN1Q8WXD9 1431 aa16.85■□□□□ 0.29
CLPX-204ENST00000559152 LRRC9Q6ZRR7 1453 aa16.85■□□□□ 0.29
CLPX-204ENST00000559152 FHOD3Q2V2M9 1422 aa16.83■□□□□ 0.29
CLPX-204ENST00000559152 IFT140Q96RY7 1462 aa16.83■□□□□ 0.28
CLPX-204ENST00000559152 WDR62O43379 1518 aa16.82■□□□□ 0.28
CLPX-204ENST00000559152 PCF11O94913 1555 aaKnown RBP16.82■□□□□ 0.28
CLPX-204ENST00000559152 P3H3Q8IVL6 736 aa16.82■□□□□ 0.28
CLPX-204ENST00000559152 CLSPNQ9HAW4 1339 aa16.81■□□□□ 0.28
CLPX-204ENST00000559152 CFAP43Q8NDM7 1665 aa16.81■□□□□ 0.28
CLPX-204ENST00000559152 SAMD9Q5K651 1589 aa16.79■□□□□ 0.28
CLPX-204ENST00000559152 GRIN2BQ13224 1484 aa16.79■□□□□ 0.28
CLPX-204ENST00000559152 PBRM1Q86U86 1689 aa16.78■□□□□ 0.28
CLPX-204ENST00000559152 ATP1B4Q9UN42 357 aaPredicted RBP16.75■□□□□ 0.27
CLPX-204ENST00000559152 ADAMTS12P58397 1594 aa16.75■□□□□ 0.27
CLPX-204ENST00000559152 SNAPC4Q5SXM2 1469 aa16.73■□□□□ 0.27
CLPX-204ENST00000559152 PHLDB1Q86UU1 1377 aa16.7■□□□□ 0.26
CLPX-204ENST00000559152 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLPX-204ENST00000559152 IQGAP2Q13576 1575 aa16.69■□□□□ 0.26
CLPX-204ENST00000559152 DHX57Q6P158 1386 aaKnown RBP16.68■□□□□ 0.26
CLPX-204ENST00000559152 ZNF608Q9ULD9 1512 aaPredicted RBP16.66■□□□□ 0.26
CLPX-204ENST00000559152 MTUS2Q5JR59 1369 aa16.64■□□□□ 0.25
CLPX-204ENST00000559152 ZNF316A6NFI3 1004 aaPredicted RBP16.64■□□□□ 0.25
CLPX-204ENST00000559152 CCDC18Q5T9S5 1454 aa16.63■□□□□ 0.25
CLPX-204ENST00000559152 UGGT2Q9NYU1 1516 aa16.62■□□□□ 0.25
CLPX-204ENST00000559152 ITGAEP38570 1179 aa16.62■□□□□ 0.25
CLPX-204ENST00000559152 FAM50AQ14320 339 aaKnown RBP16.62■□□□□ 0.25
CLPX-204ENST00000559152 KIAA0586Q9BVV6 1533 aa16.61■□□□□ 0.25
CLPX-204ENST00000559152 EIF4G3O43432 1585 aaKnown RBP16.61■□□□□ 0.25
CLPX-204ENST00000559152 SETD5Q9C0A6 1442 aa16.61■□□□□ 0.25
CLPX-204ENST00000559152 DIEXFQ68CQ4 756 aaKnown RBP16.6■□□□□ 0.25
CLPX-204ENST00000559152 MAGI1Q96QZ7 1491 aaPredicted RBP16.6■□□□□ 0.25
CLPX-204ENST00000559152 EHBP1L1Q8N3D4 1523 aa16.59■□□□□ 0.25
CLPX-204ENST00000559152 RAB3GAP2Q9H2M9 1393 aa16.58■□□□□ 0.25
CLPX-204ENST00000559152 HECW1Q76N89 1606 aa16.58■□□□□ 0.25
CLPX-204ENST00000559152 GRIN2AQ12879 1464 aa16.58■□□□□ 0.24
CLPX-204ENST00000559152 FGD6Q6ZV73 1430 aa16.57■□□□□ 0.24
CLPX-204ENST00000559152 SUPT6HQ7KZ85 1726 aaKnown RBP16.55■□□□□ 0.24
CLPX-204ENST00000559152 NCOA2Q15596 1464 aa16.54■□□□□ 0.24
CLPX-204ENST00000559152 SYNJ2O15056 1496 aa16.53■□□□□ 0.24
CLPX-204ENST00000559152 MYOM3Q5VTT5 1437 aa16.53■□□□□ 0.24
CLPX-204ENST00000559152 LRRIQ1Q96JM4 1722 aa16.53■□□□□ 0.24
CLPX-204ENST00000559152 CHMP7Q8WUX9 453 aaPredicted RBP16.51■□□□□ 0.23
CLPX-204ENST00000559152 EPRSP07814 1512 aaKnown RBP16.51■□□□□ 0.23
CLPX-204ENST00000559152 KIAA0556O60303 1618 aa16.5■□□□□ 0.23
CLPX-204ENST00000559152 ARHGEF11O15085 1522 aa16.49■□□□□ 0.23
CLPX-204ENST00000559152 DISP1Q96F81 1524 aa16.48■□□□□ 0.23
CLPX-204ENST00000559152 MAGI3Q5TCQ9 1506 aa16.44■□□□□ 0.22
CLPX-204ENST00000559152 NUP160Q12769 1436 aa16.43■□□□□ 0.22
CLPX-204ENST00000559152 CDK11AQ9UQ88 783 aaPredicted RBP16.43■□□□□ 0.22
CLPX-204ENST00000559152 MAPKBP1O60336 1514 aa16.43■□□□□ 0.22
CLPX-204ENST00000559152 HFM1A2PYH4 1435 aa16.43■□□□□ 0.22
CLPX-204ENST00000559152 MIA2Q96PC5 1412 aa16.43■□□□□ 0.22
CLPX-204ENST00000559152 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
CLPX-204ENST00000559152 CARMIL2Q6F5E8 1435 aa16.42■□□□□ 0.22
CLPX-204ENST00000559152 TCOF1Q13428 1488 aaKnown RBP16.42■□□□□ 0.22
CLPX-204ENST00000559152 CEP170Q5SW79 1584 aa16.42■□□□□ 0.22
CLPX-204ENST00000559152 PTPN23Q9H3S7 1636 aa16.42■□□□□ 0.22
CLPX-204ENST00000559152 RAPGEF6Q8TEU7 1601 aa16.4■□□□□ 0.22
CLPX-204ENST00000559152 CDK13Q14004 1512 aaKnown RBP16.39■□□□□ 0.22
CLPX-204ENST00000559152 FBLN2P98095 1184 aa16.39■□□□□ 0.22
CLPX-204ENST00000559152 NUP153P49790 1475 aaKnown RBP16.38■□□□□ 0.21
CLPX-204ENST00000559152 JPH4Q96JJ6 628 aa16.37■□□□□ 0.21
CLPX-204ENST00000559152 PTPRKQ15262 1439 aa16.36■□□□□ 0.21
CLPX-204ENST00000559152 ACIN1Q9UKV3 1341 aaKnown RBP16.35■□□□□ 0.21
CLPX-204ENST00000559152 AKNAQ7Z591 1439 aa16.35■□□□□ 0.21
CLPX-204ENST00000559152 UACAQ9BZF9 1416 aa16.35■□□□□ 0.21
CLPX-204ENST00000559152 NAIPQ13075 1403 aa16.34■□□□□ 0.21
CLPX-204ENST00000559152 CHD1O14646 1710 aa16.3■□□□□ 0.2
CLPX-204ENST00000559152 TROQ12816 1431 aaPredicted RBP16.29■□□□□ 0.2
CLPX-204ENST00000559152 ARID3CA6NKF2 412 aa16.29■□□□□ 0.2
CLPX-204ENST00000559152 CENPBP07199 599 aaPredicted RBP16.29■□□□□ 0.2
CLPX-204ENST00000559152 PLB1Q6P1J6 1458 aa16.27■□□□□ 0.2
CLPX-204ENST00000559152 NEUROD1Q13562 356 aa16.26■□□□□ 0.19
CLPX-204ENST00000559152 SIN3AQ96ST3 1273 aa16.26■□□□□ 0.19
CLPX-204ENST00000559152 ROCK1Q13464 1354 aa16.25■□□□□ 0.19
CLPX-204ENST00000559152 GCC2Q8IWJ2 1684 aa16.25■□□□□ 0.19
CLPX-204ENST00000559152 ABCA8O94911 1581 aa16.23■□□□□ 0.19
CLPX-204ENST00000559152 MIER1Q8N108 512 aa16.22■□□□□ 0.19
CLPX-204ENST00000559152 ADCY10Q96PN6 1610 aa16.22■□□□□ 0.19
CLPX-204ENST00000559152 DAPK1P53355 1430 aa16.22■□□□□ 0.19
CLPX-204ENST00000559152 PRG4Q92954 1404 aaPredicted RBP16.22■□□□□ 0.19
CLPX-204ENST00000559152 RRP7BPQ9NSQ0 103 aa16.22■□□□□ 0.19
CLPX-204ENST00000559152 CHIC2Q9UKJ5 165 aa16.21■□□□□ 0.19
CLPX-204ENST00000559152 ITSN2Q9NZM3 1697 aa16.21■□□□□ 0.19
CLPX-204ENST00000559152 PLEKHD1A6NEE1 506 aa16.21■□□□□ 0.18
CLPX-204ENST00000559152 DNMT1P26358 1616 aaKnown RBP16.2■□□□□ 0.18
CLPX-204ENST00000559152 TONSLQ96HA7 1378 aa16.2■□□□□ 0.18
CLPX-204ENST00000559152 PPP1R15AO75807 674 aaPredicted RBP16.2■□□□□ 0.18
CLPX-204ENST00000559152 CFDP1Q9UEE9 299 aaPredicted RBP16.19■□□□□ 0.18
CLPX-204ENST00000559152 ABCC5O15440 1437 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms