RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 RIMBP3Q9UFD9 1639 aa8.88□□□□□ -0.99
LDLR-209ENST00000558528 TSHZ2Q9NRE2 1034 aa8.87□□□□□ -0.99
LDLR-209ENST00000558528 SMARCA2P51531 1590 aa8.86□□□□□ -0.99
LDLR-209ENST00000558528 TULP1O00294 542 aaPredicted RBP8.86□□□□□ -0.99
LDLR-209ENST00000558528 GTF3C3Q9Y5Q9 886 aa8.86□□□□□ -0.99
LDLR-209ENST00000558528 ILDR1Q86SU0 546 aaPredicted RBP8.85□□□□□ -0.99
LDLR-209ENST00000558528 STAG3Q9UJ98 1225 aa8.85□□□□□ -0.99
LDLR-209ENST00000558528 KIF21AQ7Z4S6 1674 aa8.82□□□□□ -1
LDLR-209ENST00000558528 ZBTB12Q9Y330 459 aaPredicted RBP8.82□□□□□ -1
LDLR-209ENST00000558528 LAMC3Q9Y6N6 1575 aa8.82□□□□□ -1
LDLR-209ENST00000558528 RGL2O15211 777 aa8.81□□□□□ -1
LDLR-209ENST00000558528 HMGXB3Q12766 1538 aa8.8□□□□□ -1
LDLR-209ENST00000558528 TRHP20396 242 aaPredicted RBP8.8□□□□□ -1
LDLR-209ENST00000558528 ARHGEF11O15085 1522 aa8.8□□□□□ -1
LDLR-209ENST00000558528 ATAD2BQ9ULI0 1458 aa8.79□□□□□ -1
LDLR-209ENST00000558528 SUPT5HO00267 1087 aaKnown RBP8.79□□□□□ -1
LDLR-209ENST00000558528 CHGAP10645 457 aaKnown RBP8.77□□□□□ -1.01
LDLR-209ENST00000558528 TMEM132AQ24JP5 1023 aa8.77□□□□□ -1.01
LDLR-209ENST00000558528 WDR62O43379 1518 aa8.76□□□□□ -1.01
LDLR-209ENST00000558528 PDS5BQ9NTI5 1447 aa8.76□□□□□ -1.01
LDLR-209ENST00000558528 PLCD3Q8N3E9 789 aa8.75□□□□□ -1.01
LDLR-209ENST00000558528 HOMEZQ8IX15 550 aa8.74□□□□□ -1.01
LDLR-209ENST00000558528 ZBTB47Q9UFB7 747 aaPredicted RBP8.74□□□□□ -1.01
LDLR-209ENST00000558528 MRC2Q9UBG0 1479 aa8.74□□□□□ -1.01
LDLR-209ENST00000558528 POLA2Q14181 598 aa8.72□□□□□ -1.01
LDLR-209ENST00000558528 RSF1Q96T23 1441 aaPredicted RBP8.71□□□□□ -1.01
LDLR-209ENST00000558528 CYB5RLQ6IPT4 315 aa8.71□□□□□ -1.02
LDLR-209ENST00000558528 HS6ST3Q8IZP7 471 aa8.71□□□□□ -1.02
LDLR-209ENST00000558528 PLEKHG5O94827 1062 aa8.69□□□□□ -1.02
LDLR-209ENST00000558528 ARAP1Q96P48 1450 aa8.67□□□□□ -1.02
LDLR-209ENST00000558528 CIZ1Q9ULV3 898 aaPredicted RBP8.66□□□□□ -1.02
LDLR-209ENST00000558528 MIER1Q8N108 512 aa8.65□□□□□ -1.02
LDLR-209ENST00000558528 MROH2BQ7Z745 1585 aa8.64□□□□□ -1.03
LDLR-209ENST00000558528 BAZ1BQ9UIG0 1483 aaKnown RBP8.64□□□□□ -1.03
LDLR-209ENST00000558528 C14orf37Q86TY3 774 aa8.63□□□□□ -1.03
LDLR-209ENST00000558528 SMARCA4P51532 1647 aa8.61□□□□□ -1.03
LDLR-209ENST00000558528 ZNF692Q9BU19 519 aaPredicted RBP8.6□□□□□ -1.03
LDLR-209ENST00000558528 CADPSQ9ULU8 1353 aa8.6□□□□□ -1.03
LDLR-209ENST00000558528 P3H3Q8IVL6 736 aa8.58□□□□□ -1.04
LDLR-209ENST00000558528 PEG3Q9GZU2 1588 aa8.57□□□□□ -1.04
LDLR-209ENST00000558528 SPDYE2BA6NHP3 402 aa8.57□□□□□ -1.04
LDLR-209ENST00000558528 SPDYE6P0CI01 402 aa8.57□□□□□ -1.04
LDLR-209ENST00000558528 SPDYE2Q495Y8 402 aa8.57□□□□□ -1.04
LDLR-209ENST00000558528 RYDENQ9NUL5 291 aaKnown RBP8.57□□□□□ -1.04
LDLR-209ENST00000558528 CAPN15O75808 1086 aa8.56□□□□□ -1.04
LDLR-209ENST00000558528 GSE1Q14687 1217 aa8.56□□□□□ -1.04
LDLR-209ENST00000558528 CEP164Q9UPV0 1460 aa8.56□□□□□ -1.04
LDLR-209ENST00000558528 SPINK5Q9NQ38 1064 aaPredicted RBP8.55□□□□□ -1.04
LDLR-209ENST00000558528 SSUH2Q9Y2M2 353 aa8.54□□□□□ -1.04
LDLR-209ENST00000558528 TOP2AP11388 1531 aaKnown RBP8.51□□□□□ -1.05
LDLR-209ENST00000558528 GTPBP6O43824 516 aaPredicted RBP8.5□□□□□ -1.05
LDLR-209ENST00000558528 WIZO95785 1651 aa8.49□□□□□ -1.05
LDLR-209ENST00000558528 FANCD2Q9BXW9 1451 aa8.49□□□□□ -1.05
LDLR-209ENST00000558528 URB2Q14146 1524 aaKnown RBP8.49□□□□□ -1.05
LDLR-209ENST00000558528 RIOK3O14730 519 aaKnown RBP8.48□□□□□ -1.05
LDLR-209ENST00000558528 ZNF608Q9ULD9 1512 aaPredicted RBP8.48□□□□□ -1.05
LDLR-209ENST00000558528 NKX1-1Q15270 411 aaPredicted RBP8.47□□□□□ -1.05
LDLR-209ENST00000558528 RNF25Q96BH1 459 aaPredicted RBP8.45□□□□□ -1.06
LDLR-209ENST00000558528 CHD1O14646 1710 aa8.44□□□□□ -1.06
LDLR-209ENST00000558528 KDM4FA0A1W2PPD8 638 aa8.44□□□□□ -1.06
LDLR-209ENST00000558528 VGFO15240 615 aaPredicted RBP8.44□□□□□ -1.06
LDLR-209ENST00000558528 CCDC88BA6NC98 1476 aa8.44□□□□□ -1.06
LDLR-209ENST00000558528 IFT140Q96RY7 1462 aa8.43□□□□□ -1.06
LDLR-209ENST00000558528 STK25O00506 426 aa8.42□□□□□ -1.06
LDLR-209ENST00000558528 LMOD2Q6P5Q4 547 aa8.41□□□□□ -1.06
LDLR-209ENST00000558528 SGIP1Q9BQI5 828 aa8.4□□□□□ -1.06
LDLR-209ENST00000558528 EIF4G3O43432 1585 aaKnown RBP8.39□□□□□ -1.07
LDLR-209ENST00000558528 ABCB7O75027 752 aa8.39□□□□□ -1.07
LDLR-209ENST00000558528 C1QBPQ07021 282 aaKnown RBP8.39□□□□□ -1.07
LDLR-209ENST00000558528 ERCC6L2Q5T890 1561 aa8.39□□□□□ -1.07
LDLR-209ENST00000558528 FBXO41Q8TF61 875 aa8.38□□□□□ -1.07
LDLR-209ENST00000558528 RNF39Q9H2S5 420 aa8.38□□□□□ -1.07
LDLR-209ENST00000558528 WDR70Q9NW82 654 aa8.38□□□□□ -1.07
LDLR-209ENST00000558528 CLASP1Q7Z460 1538 aa8.38□□□□□ -1.07
LDLR-209ENST00000558528 CFTRP13569 1480 aa8.38□□□□□ -1.07
LDLR-209ENST00000558528 RANGAP1P46060 587 aaPredicted RBP8.37□□□□□ -1.07
LDLR-209ENST00000558528 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.37□□□□□ -1.07
LDLR-209ENST00000558528 LMTK3Q96Q04 1460 aa8.36□□□□□ -1.07
LDLR-209ENST00000558528 BRPF1P55201 1214 aaPredicted RBP8.35□□□□□ -1.07
LDLR-209ENST00000558528 CHRM1P11229 460 aaPredicted RBP8.34□□□□□ -1.07
LDLR-209ENST00000558528 DCAF8Q5TAQ9 597 aa8.34□□□□□ -1.07
LDLR-209ENST00000558528 FAM212AQ96EL1 285 aa8.34□□□□□ -1.07
LDLR-209ENST00000558528 SOCS7O14512 581 aa8.33□□□□□ -1.08
LDLR-209ENST00000558528 NUBP1P53384 320 aa8.33□□□□□ -1.08
LDLR-209ENST00000558528 HECW2Q9P2P5 1572 aa8.31□□□□□ -1.08
LDLR-209ENST00000558528 KIF13AQ9H1H9 1805 aa8.31□□□□□ -1.08
LDLR-209ENST00000558528 STK24Q9Y6E0 443 aa8.31□□□□□ -1.08
LDLR-209ENST00000558528 GAPVD1Q14C86 1478 aa8.31□□□□□ -1.08
LDLR-209ENST00000558528 KCNV2Q8TDN2 545 aa8.3□□□□□ -1.08
LDLR-209ENST00000558528 BCL11BQ9C0K0 894 aaPredicted RBP8.3□□□□□ -1.08
LDLR-209ENST00000558528 AQRO60306 1485 aaKnown RBP eCLIP8.3□□□□□ -1.087e-9■■■■■ 41.3
LDLR-209ENST00000558528 NEUROD2Q15784 382 aa8.29□□□□□ -1.08
LDLR-209ENST00000558528 PODXL2Q9NZ53 605 aa8.27□□□□□ -1.09
LDLR-209ENST00000558528 SYNJ1O43426 1573 aa8.27□□□□□ -1.09
LDLR-209ENST00000558528 TARBP1Q13395 1621 aaKnown RBP8.26□□□□□ -1.09
LDLR-209ENST00000558528 TOPBP1Q92547 1522 aa8.26□□□□□ -1.09
LDLR-209ENST00000558528 ILDR2Q71H61 639 aa8.26□□□□□ -1.09
LDLR-209ENST00000558528 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.25□□□□□ -1.09
LDLR-209ENST00000558528 ARHGEF1Q92888 912 aaKnown RBP8.25□□□□□ -1.09
LDLR-209ENST00000558528 ZFP91Q96JP5 570 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms