RNA–Protein interactions for RNA: ENST00000557623.5

SLIRP-211, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2 BASIC

Gene SLIRP, Length 865 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-211ENST00000557623 TRIM41Q8WV44 630 aa21.25■□□□□ 0.99
SLIRP-211ENST00000557623 ARHGEF11O15085 1522 aa21.24■□□□□ 0.99
SLIRP-211ENST00000557623 PPP4R3CPQ6ZMV5 832 aa21.21■□□□□ 0.99
SLIRP-211ENST00000557623 IGF1RP08069 1367 aa21.21■□□□□ 0.99
SLIRP-211ENST00000557623 NUP160Q12769 1436 aa21.19■□□□□ 0.98
SLIRP-211ENST00000557623 CEP170Q5SW79 1584 aa21.19■□□□□ 0.98
SLIRP-211ENST00000557623 CARMIL1Q5VZK9 1371 aa21.11■□□□□ 0.97
SLIRP-211ENST00000557623 RUSC2Q8N2Y8 1516 aa21.09■□□□□ 0.97
SLIRP-211ENST00000557623 SHROOM2Q13796 1616 aa21.07■□□□□ 0.96
SLIRP-211ENST00000557623 ARAP1Q96P48 1450 aa21.04■□□□□ 0.96
SLIRP-211ENST00000557623 CYB5RLQ6IPT4 315 aa21.01■□□□□ 0.95
SLIRP-211ENST00000557623 RAPGEF2Q9Y4G8 1499 aa21.01■□□□□ 0.95
SLIRP-211ENST00000557623 KIAA0586Q9BVV6 1533 aa20.99■□□□□ 0.95
SLIRP-211ENST00000557623 MAPK8IP2Q13387 824 aaPredicted RBP20.98■□□□□ 0.95
SLIRP-211ENST00000557623 JPH4Q96JJ6 628 aa20.97■□□□□ 0.95
SLIRP-211ENST00000557623 ERCC6L2Q5T890 1561 aa20.95■□□□□ 0.94
SLIRP-211ENST00000557623 EEA1Q15075 1411 aa20.95■□□□□ 0.94
SLIRP-211ENST00000557623 PRG4Q92954 1404 aaPredicted RBP20.93■□□□□ 0.94
SLIRP-211ENST00000557623 IQGAP2Q13576 1575 aa20.9■□□□□ 0.94
SLIRP-211ENST00000557623 PRXQ9BXM0 1461 aa20.9■□□□□ 0.94
SLIRP-211ENST00000557623 CTTNBP2Q8WZ74 1663 aa20.89■□□□□ 0.93
SLIRP-211ENST00000557623 CSRNP3Q8WYN3 585 aa20.88■□□□□ 0.93
SLIRP-211ENST00000557623 CARMIL2Q6F5E8 1435 aa20.79■□□□□ 0.92
SLIRP-211ENST00000557623 UGGT2Q9NYU1 1516 aa20.78■□□□□ 0.92
SLIRP-211ENST00000557623 DMRT2Q9Y5R5 561 aa20.77■□□□□ 0.92
SLIRP-211ENST00000557623 FAM9AQ8IZU1 332 aaPredicted RBP20.76■□□□□ 0.91
SLIRP-211ENST00000557623 KIF21BO75037 1637 aa20.74■□□□□ 0.91
SLIRP-211ENST00000557623 POTEDQ86YR6 584 aa20.71■□□□□ 0.91
SLIRP-211ENST00000557623 DISP1Q96F81 1524 aa20.71■□□□□ 0.91
SLIRP-211ENST00000557623 TNIKQ9UKE5 1360 aa20.71■□□□□ 0.91
SLIRP-211ENST00000557623 KIAA0556O60303 1618 aa20.69■□□□□ 0.9
SLIRP-211ENST00000557623 PTPRGP23470 1445 aa20.69■□□□□ 0.9
SLIRP-211ENST00000557623 NCBP3Q53F19 620 aaKnown RBP20.68■□□□□ 0.9
SLIRP-211ENST00000557623 CNKSR2Q8WXI2 1034 aa20.68■□□□□ 0.9
SLIRP-211ENST00000557623 GOLGA3Q08378 1498 aa20.68■□□□□ 0.9
SLIRP-211ENST00000557623 ADCY10Q96PN6 1610 aa20.64■□□□□ 0.89
SLIRP-211ENST00000557623 TTBK1Q5TCY1 1321 aaPredicted RBP20.6■□□□□ 0.89
SLIRP-211ENST00000557623 NPM1P06748 294 aaKnown RBP eCLIP20.6■□□□□ 0.89
SLIRP-211ENST00000557623 TRHP20396 242 aaPredicted RBP20.6■□□□□ 0.89
SLIRP-211ENST00000557623 SAMD9Q5K651 1589 aa20.55■□□□□ 0.88
SLIRP-211ENST00000557623 UACAQ9BZF9 1416 aa20.55■□□□□ 0.88
SLIRP-211ENST00000557623 UHRF1BP1LA0JNW5 1464 aa20.55■□□□□ 0.88
SLIRP-211ENST00000557623 MAPKBP1O60336 1514 aa20.53■□□□□ 0.88
SLIRP-211ENST00000557623 ABCC2Q92887 1545 aa20.53■□□□□ 0.88
SLIRP-211ENST00000557623 UBTFP17480 764 aaKnown RBP20.51■□□□□ 0.87
SLIRP-211ENST00000557623 KCNA4P22459 653 aa20.48■□□□□ 0.87
SLIRP-211ENST00000557623 KIF13AQ9H1H9 1805 aa20.48■□□□□ 0.87
SLIRP-211ENST00000557623 EFCAB5A4FU69 1503 aa20.48■□□□□ 0.87
SLIRP-211ENST00000557623 EHMT2Q96KQ7 1210 aa20.47■□□□□ 0.87
SLIRP-211ENST00000557623 ABCA8O94911 1581 aa20.46■□□□□ 0.87
SLIRP-211ENST00000557623 P3H3Q8IVL6 736 aa20.46■□□□□ 0.87
SLIRP-211ENST00000557623 PLB1Q6P1J6 1458 aa20.44■□□□□ 0.86
SLIRP-211ENST00000557623 KDM5BQ9UGL1 1544 aa20.44■□□□□ 0.86
SLIRP-211ENST00000557623 RANGAP1P46060 587 aaPredicted RBP20.44■□□□□ 0.86
SLIRP-211ENST00000557623 ZCCHC11Q5TAX3 1644 aaKnown RBP20.43■□□□□ 0.86
SLIRP-211ENST00000557623 ABCC10Q5T3U5 1492 aa20.42■□□□□ 0.86
SLIRP-211ENST00000557623 DIP2BQ9P265 1576 aa20.4■□□□□ 0.86
SLIRP-211ENST00000557623 RAPGEF6Q8TEU7 1601 aa20.38■□□□□ 0.85
SLIRP-211ENST00000557623 FHOD3Q2V2M9 1422 aa20.37■□□□□ 0.85
SLIRP-211ENST00000557623 ASXL2Q76L83 1435 aa20.36■□□□□ 0.85
SLIRP-211ENST00000557623 FAM69CQ0P6D2 419 aa20.35■□□□□ 0.85
SLIRP-211ENST00000557623 ARHGAP35Q9NRY4 1499 aa20.31■□□□□ 0.84
SLIRP-211ENST00000557623 RNF216Q9NWF9 866 aaPredicted RBP20.31■□□□□ 0.84
SLIRP-211ENST00000557623 GLI2P10070 1586 aa20.3■□□□□ 0.84
SLIRP-211ENST00000557623 NPM3O75607 178 aaKnown RBP20.28■□□□□ 0.84
SLIRP-211ENST00000557623 WDR7Q9Y4E6 1490 aa20.28■□□□□ 0.84
SLIRP-211ENST00000557623 TSPOAP1O95153 1857 aa20.28■□□□□ 0.84
SLIRP-211ENST00000557623 FMN1Q68DA7 1419 aa20.27■□□□□ 0.83
SLIRP-211ENST00000557623 ATP10BO94823 1461 aa20.26■□□□□ 0.83
SLIRP-211ENST00000557623 EPRSP07814 1512 aaKnown RBP20.26■□□□□ 0.83
SLIRP-211ENST00000557623 HOXD11P31277 338 aaPredicted RBP20.25■□□□□ 0.83
SLIRP-211ENST00000557623 NUP153P49790 1475 aaKnown RBP20.24■□□□□ 0.83
SLIRP-211ENST00000557623 MAP3K4Q9Y6R4 1608 aa20.21■□□□□ 0.83
SLIRP-211ENST00000557623 ARID3CA6NKF2 412 aa20.21■□□□□ 0.83
SLIRP-211ENST00000557623 HECW1Q76N89 1606 aa20.2■□□□□ 0.82
SLIRP-211ENST00000557623 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.19■□□□□ 0.82
SLIRP-211ENST00000557623 HNRNPUL2Q1KMD3 747 aaKnown RBP20.19■□□□□ 0.82
SLIRP-211ENST00000557623 CLIP1P30622 1438 aa20.19■□□□□ 0.82
SLIRP-211ENST00000557623 CFAP43Q8NDM7 1665 aa20.18■□□□□ 0.82
SLIRP-211ENST00000557623 PPRC1Q5VV67 1664 aaKnown RBP20.17■□□□□ 0.82
SLIRP-211ENST00000557623 KCNH8Q96L42 1107 aa20.15■□□□□ 0.82
SLIRP-211ENST00000557623 TEX14Q8IWB6 1497 aa20.12■□□□□ 0.81
SLIRP-211ENST00000557623 ATP1B4Q9UN42 357 aaPredicted RBP20.12■□□□□ 0.81
SLIRP-211ENST00000557623 PLEKHD1A6NEE1 506 aa20.11■□□□□ 0.81
SLIRP-211ENST00000557623 KDM6BO15054 1643 aa20.1■□□□□ 0.81
SLIRP-211ENST00000557623 ABCA9Q8IUA7 1624 aa20.1■□□□□ 0.81
SLIRP-211ENST00000557623 CDK13Q14004 1512 aaKnown RBP20.1■□□□□ 0.81
SLIRP-211ENST00000557623 CD109Q6YHK3 1445 aa20.1■□□□□ 0.81
SLIRP-211ENST00000557623 PCF11O94913 1555 aaKnown RBP20.09■□□□□ 0.81
SLIRP-211ENST00000557623 LRRIQ1Q96JM4 1722 aa20.09■□□□□ 0.81
SLIRP-211ENST00000557623 CEP162Q5TB80 1403 aa20.09■□□□□ 0.81
SLIRP-211ENST00000557623 CASKIN1Q8WXD9 1431 aa20.09■□□□□ 0.81
SLIRP-211ENST00000557623 LOC105371045A0A1W2PR82 267 aa20.07■□□□□ 0.8
SLIRP-211ENST00000557623 MAGI3Q5TCQ9 1506 aa20.07■□□□□ 0.8
SLIRP-211ENST00000557623 FYCO1Q9BQS8 1478 aa20.05■□□□□ 0.8
SLIRP-211ENST00000557623 CDK11AQ9UQ88 783 aaPredicted RBP20.05■□□□□ 0.8
SLIRP-211ENST00000557623 CCDC18Q5T9S5 1454 aa20.05■□□□□ 0.8
SLIRP-211ENST00000557623 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.98■□□□□ 0.79
SLIRP-211ENST00000557623 TROQ12816 1431 aaPredicted RBP19.96■□□□□ 0.79
SLIRP-211ENST00000557623 KIF14Q15058 1648 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms