RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 FAM69CQ0P6D2 419 aa19.51■□□□□ 0.71
SHMT2-216ENST00000554975 ERICH3Q5RHP9 1530 aa19.51■□□□□ 0.71
SHMT2-216ENST00000554975 TOP2BQ02880 1626 aa19.5■□□□□ 0.71
SHMT2-216ENST00000554975 ADCY10Q96PN6 1610 aa19.49■□□□□ 0.71
SHMT2-216ENST00000554975 MAPKBP1O60336 1514 aa19.48■□□□□ 0.71
SHMT2-216ENST00000554975 RUSC2Q8N2Y8 1516 aa19.48■□□□□ 0.71
SHMT2-216ENST00000554975 KDM6BO15054 1643 aa19.47■□□□□ 0.71
SHMT2-216ENST00000554975 JPH4Q96JJ6 628 aa19.46■□□□□ 0.71
SHMT2-216ENST00000554975 ILDR1Q86SU0 546 aaPredicted RBP19.45■□□□□ 0.7
SHMT2-216ENST00000554975 NPM1P06748 294 aaKnown RBP eCLIP19.35■□□□□ 0.69
SHMT2-216ENST00000554975 PPRC1Q5VV67 1664 aaKnown RBP19.31■□□□□ 0.68
SHMT2-216ENST00000554975 SUPT5HO00267 1087 aaKnown RBP19.26■□□□□ 0.67
SHMT2-216ENST00000554975 ADGRL1O94910 1474 aa19.23■□□□□ 0.67
SHMT2-216ENST00000554975 KIAA0586Q9BVV6 1533 aa19.23■□□□□ 0.67
SHMT2-216ENST00000554975 CUL7Q14999 1698 aa19.18■□□□□ 0.66
SHMT2-216ENST00000554975 HECW2Q9P2P5 1572 aa19.18■□□□□ 0.66
SHMT2-216ENST00000554975 GLI2P10070 1586 aa19.16■□□□□ 0.66
SHMT2-216ENST00000554975 COL17A1Q9UMD9 1497 aaPredicted RBP19.16■□□□□ 0.66
SHMT2-216ENST00000554975 TTBK1Q5TCY1 1321 aaPredicted RBP19.15■□□□□ 0.66
SHMT2-216ENST00000554975 ASXL2Q76L83 1435 aa19.15■□□□□ 0.66
SHMT2-216ENST00000554975 ABCC2Q92887 1545 aa19.15■□□□□ 0.66
SHMT2-216ENST00000554975 PTPRGP23470 1445 aa19.14■□□□□ 0.65
SHMT2-216ENST00000554975 IGF1RP08069 1367 aa19.12■□□□□ 0.65
SHMT2-216ENST00000554975 MAP3K4Q9Y6R4 1608 aa19.09■□□□□ 0.65
SHMT2-216ENST00000554975 PLB1Q6P1J6 1458 aa19.09■□□□□ 0.65
SHMT2-216ENST00000554975 TNIKQ9UKE5 1360 aa19.06■□□□□ 0.64
SHMT2-216ENST00000554975 EPRSP07814 1512 aaKnown RBP19.04■□□□□ 0.64
SHMT2-216ENST00000554975 UHRF1BP1LA0JNW5 1464 aa19.03■□□□□ 0.64
SHMT2-216ENST00000554975 KIF27Q86VH2 1401 aa19.02■□□□□ 0.64
SHMT2-216ENST00000554975 IQGAP2Q13576 1575 aa19.02■□□□□ 0.63
SHMT2-216ENST00000554975 ZCCHC11Q5TAX3 1644 aaKnown RBP19.01■□□□□ 0.63
SHMT2-216ENST00000554975 CARMIL2Q6F5E8 1435 aa19■□□□□ 0.63
SHMT2-216ENST00000554975 UACAQ9BZF9 1416 aa19■□□□□ 0.63
SHMT2-216ENST00000554975 DISP1Q96F81 1524 aa18.99■□□□□ 0.63
SHMT2-216ENST00000554975 KDM5BQ9UGL1 1544 aa18.98■□□□□ 0.63
SHMT2-216ENST00000554975 CARMIL1Q5VZK9 1371 aa18.96■□□□□ 0.63
SHMT2-216ENST00000554975 TEX14Q8IWB6 1497 aa18.96■□□□□ 0.63
SHMT2-216ENST00000554975 KIF21BO75037 1637 aa18.89■□□□□ 0.61
SHMT2-216ENST00000554975 KIAA0556O60303 1618 aa18.88■□□□□ 0.61
SHMT2-216ENST00000554975 UGGT2Q9NYU1 1516 aa18.86■□□□□ 0.61
SHMT2-216ENST00000554975 WDR7Q9Y4E6 1490 aa18.86■□□□□ 0.61
SHMT2-216ENST00000554975 CFAP43Q8NDM7 1665 aa18.84■□□□□ 0.61
SHMT2-216ENST00000554975 FBXO41Q8TF61 875 aa18.82■□□□□ 0.6
SHMT2-216ENST00000554975 MAGI3Q5TCQ9 1506 aa18.8■□□□□ 0.6
SHMT2-216ENST00000554975 CD109Q6YHK3 1445 aa18.78■□□□□ 0.6
SHMT2-216ENST00000554975 ABCA8O94911 1581 aa18.74■□□□□ 0.59
SHMT2-216ENST00000554975 ADAMTSL3P82987 1691 aa18.73■□□□□ 0.59
SHMT2-216ENST00000554975 CTTNBP2Q8WZ74 1663 aa18.73■□□□□ 0.59
SHMT2-216ENST00000554975 RAPGEF2Q9Y4G8 1499 aa18.73■□□□□ 0.59
SHMT2-216ENST00000554975 KCNH8Q96L42 1107 aa18.72■□□□□ 0.59
SHMT2-216ENST00000554975 PTPRMP28827 1452 aa18.7■□□□□ 0.58
SHMT2-216ENST00000554975 ARAP3Q8WWN8 1544 aa18.67■□□□□ 0.58
SHMT2-216ENST00000554975 BCORL1Q5H9F3 1711 aa18.64■□□□□ 0.57
SHMT2-216ENST00000554975 MADDQ8WXG6 1647 aa18.63■□□□□ 0.57
SHMT2-216ENST00000554975 PCF11O94913 1555 aaKnown RBP18.62■□□□□ 0.57
SHMT2-216ENST00000554975 FRMPD1Q5SYB0 1578 aa18.6■□□□□ 0.57
SHMT2-216ENST00000554975 LMTK3Q96Q04 1460 aa18.6■□□□□ 0.57
SHMT2-216ENST00000554975 ABCA9Q8IUA7 1624 aa18.59■□□□□ 0.57
SHMT2-216ENST00000554975 GOLGA3Q08378 1498 aa18.58■□□□□ 0.57
SHMT2-216ENST00000554975 ARID3CA6NKF2 412 aa18.57■□□□□ 0.56
SHMT2-216ENST00000554975 RIMS1Q86UR5 1692 aaKnown RBP18.57■□□□□ 0.56
SHMT2-216ENST00000554975 RAPGEF3O95398 923 aa18.56■□□□□ 0.56
SHMT2-216ENST00000554975 ATP10BO94823 1461 aa18.55■□□□□ 0.56
SHMT2-216ENST00000554975 SIGLEC1Q9BZZ2 1709 aa18.49■□□□□ 0.55
SHMT2-216ENST00000554975 NEO1Q92859 1461 aa18.48■□□□□ 0.55
SHMT2-216ENST00000554975 PHLDB1Q86UU1 1377 aa18.48■□□□□ 0.55
SHMT2-216ENST00000554975 ARHGEF40Q8TER5 1519 aa18.48■□□□□ 0.55
SHMT2-216ENST00000554975 RICTORQ6R327 1708 aa18.47■□□□□ 0.55
SHMT2-216ENST00000554975 HSPA2P54652 639 aa18.47■□□□□ 0.55
SHMT2-216ENST00000554975 ARID4BQ4LE39 1312 aaPredicted RBP18.47■□□□□ 0.55
SHMT2-216ENST00000554975 P3H3Q8IVL6 736 aa18.45■□□□□ 0.54
SHMT2-216ENST00000554975 PRXQ9BXM0 1461 aa18.44■□□□□ 0.54
SHMT2-216ENST00000554975 RAPGEF6Q8TEU7 1601 aa18.43■□□□□ 0.54
SHMT2-216ENST00000554975 SAMD9Q5K651 1589 aa18.4■□□□□ 0.54
SHMT2-216ENST00000554975 PLPPR3Q6T4P5 718 aa18.4■□□□□ 0.54
SHMT2-216ENST00000554975 ILDR2Q71H61 639 aa18.39■□□□□ 0.53
SHMT2-216ENST00000554975 CERKQ8TCT0 537 aa18.39■□□□□ 0.53
SHMT2-216ENST00000554975 FER1L4A9Z1Z3 1794 aa18.38■□□□□ 0.53
SHMT2-216ENST00000554975 DENND4BO75064 1496 aaPredicted RBP18.35■□□□□ 0.53
SHMT2-216ENST00000554975 NUP153P49790 1475 aaKnown RBP18.34■□□□□ 0.53
SHMT2-216ENST00000554975 ZMYM4Q5VZL5 1548 aa18.33■□□□□ 0.53
SHMT2-216ENST00000554975 YEATS2Q9ULM3 1422 aa18.33■□□□□ 0.53
SHMT2-216ENST00000554975 FHOD3Q2V2M9 1422 aa18.32■□□□□ 0.52
SHMT2-216ENST00000554975 AKNAQ7Z591 1439 aa18.32■□□□□ 0.52
SHMT2-216ENST00000554975 TTC37Q6PGP7 1564 aa18.32■□□□□ 0.52
SHMT2-216ENST00000554975 FANCAO15360 1455 aa18.32■□□□□ 0.52
SHMT2-216ENST00000554975 ZFYVE16Q7Z3T8 1539 aa18.31■□□□□ 0.52
SHMT2-216ENST00000554975 DISP3Q9P2K9 1392 aa18.3■□□□□ 0.52
SHMT2-216ENST00000554975 CFAP74Q9C0B2 1584 aa18.3■□□□□ 0.52
SHMT2-216ENST00000554975 STRCQ7RTU9 1775 aa18.3■□□□□ 0.52
SHMT2-216ENST00000554975 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.3■□□□□ 0.52
SHMT2-216ENST00000554975 HNRNPUL2Q1KMD3 747 aaKnown RBP18.3■□□□□ 0.52
SHMT2-216ENST00000554975 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.29■□□□□ 0.52
SHMT2-216ENST00000554975 PREX1Q8TCU6 1659 aa18.28■□□□□ 0.52
SHMT2-216ENST00000554975 HECW1Q76N89 1606 aa18.28■□□□□ 0.52
SHMT2-216ENST00000554975 EFCAB5A4FU69 1503 aa18.28■□□□□ 0.52
SHMT2-216ENST00000554975 POGZQ7Z3K3 1410 aa18.27■□□□□ 0.52
SHMT2-216ENST00000554975 SOCS7O14512 581 aa18.27■□□□□ 0.52
SHMT2-216ENST00000554975 MLECQ14165 292 aa18.27■□□□□ 0.52
SHMT2-216ENST00000554975 FAM9AQ8IZU1 332 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms