RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 TIMELESSQ9UNS1 1208 aa13.14□□□□□ -0.31
SIX4-202ENST00000554079 DDX10Q13206 875 aaKnown RBP13.13□□□□□ -0.31
SIX4-202ENST00000554079 GLIPR1L2Q4G1C9 344 aa13.13□□□□□ -0.31
SIX4-202ENST00000554079 USP35Q9P2H5 1018 aa13.13□□□□□ -0.31
SIX4-202ENST00000554079 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
SIX4-202ENST00000554079 ANP32AP39687 249 aaKnown RBP13.11□□□□□ -0.31
SIX4-202ENST00000554079 CUX2O14529 1486 aa13.11□□□□□ -0.31
SIX4-202ENST00000554079 CCDC88BA6NC98 1476 aa13.09□□□□□ -0.31
SIX4-202ENST00000554079 GOLGA3Q08378 1498 aa13.09□□□□□ -0.31
SIX4-202ENST00000554079 WDR97A6NE52 1622 aa13.09□□□□□ -0.31
SIX4-202ENST00000554079 VSIG10Q8N0Z9 540 aa13.08□□□□□ -0.32
SIX4-202ENST00000554079 VPS8Q8N3P4 1428 aa13.07□□□□□ -0.32
SIX4-202ENST00000554079 MAPKBP1O60336 1514 aa13.07□□□□□ -0.32
SIX4-202ENST00000554079 B4GALNT3Q6L9W6 998 aa13.06□□□□□ -0.32
SIX4-202ENST00000554079 NCAPD3P42695 1498 aa13.05□□□□□ -0.32
SIX4-202ENST00000554079 SOGA1O94964 1423 aa13.05□□□□□ -0.32
SIX4-202ENST00000554079 NEFMP07197 916 aa13.05□□□□□ -0.32
SIX4-202ENST00000554079 CLIP1P30622 1438 aa13.04□□□□□ -0.32
SIX4-202ENST00000554079 ANP32CO43423 234 aa13.04□□□□□ -0.32
SIX4-202ENST00000554079 FAM43AQ8N2R8 423 aa13.03□□□□□ -0.32
SIX4-202ENST00000554079 PEG3Q9GZU2 1588 aa13.03□□□□□ -0.32
SIX4-202ENST00000554079 CC2D2AQ9P2K1 1620 aa13.03□□□□□ -0.32
SIX4-202ENST00000554079 SMARCA2P51531 1590 aa13□□□□□ -0.33
SIX4-202ENST00000554079 KIF21BO75037 1637 aa13□□□□□ -0.33
SIX4-202ENST00000554079 HNRNPUQ00839 825 aaKnown RBP eCLIP13□□□□□ -0.33
SIX4-202ENST00000554079 WIZO95785 1651 aa12.99□□□□□ -0.33
SIX4-202ENST00000554079 RUSC2Q8N2Y8 1516 aa12.99□□□□□ -0.33
SIX4-202ENST00000554079 GSE1Q14687 1217 aa12.98□□□□□ -0.33
SIX4-202ENST00000554079 LAS1LQ9Y4W2 734 aaKnown RBP12.98□□□□□ -0.33
SIX4-202ENST00000554079 UBTFP17480 764 aaKnown RBP12.98□□□□□ -0.33
SIX4-202ENST00000554079 BAZ1AQ9NRL2 1556 aaPredicted RBP12.97□□□□□ -0.33
SIX4-202ENST00000554079 CECR2Q9BXF3 1484 aa12.96□□□□□ -0.33
SIX4-202ENST00000554079 PPM1GO15355 546 aaPredicted RBP12.96□□□□□ -0.33
SIX4-202ENST00000554079 CEP164Q9UPV0 1460 aa12.96□□□□□ -0.33
SIX4-202ENST00000554079 RRBP1Q9P2E9 1410 aaKnown RBP12.94□□□□□ -0.34
SIX4-202ENST00000554079 MROH2BQ7Z745 1585 aa12.93□□□□□ -0.34
SIX4-202ENST00000554079 FRAT1Q92837 279 aaPredicted RBP12.91□□□□□ -0.34
SIX4-202ENST00000554079 AAMPQ13685 434 aa12.89□□□□□ -0.35
SIX4-202ENST00000554079 RRP9O43818 475 aaKnown RBP12.89□□□□□ -0.35
SIX4-202ENST00000554079 RBM10P98175 930 aaKnown RBP12.88□□□□□ -0.35
SIX4-202ENST00000554079 FGD1P98174 961 aa12.86□□□□□ -0.35
SIX4-202ENST00000554079 BAZ1BQ9UIG0 1483 aaKnown RBP12.86□□□□□ -0.35
SIX4-202ENST00000554079 DCAF11Q8TEB1 546 aa12.86□□□□□ -0.35
SIX4-202ENST00000554079 HSP90AA2PQ14568 343 aaPredicted RBP12.85□□□□□ -0.35
SIX4-202ENST00000554079 SMARCA4P51532 1647 aa12.85□□□□□ -0.35
SIX4-202ENST00000554079 A0A0U1RQG5 324 aaPredicted RBP12.84□□□□□ -0.35
SIX4-202ENST00000554079 RRAGDQ9NQL2 400 aaPredicted RBP12.84□□□□□ -0.35
SIX4-202ENST00000554079 NFKBIBQ15653 356 aa12.83□□□□□ -0.36
SIX4-202ENST00000554079 SIN3AQ96ST3 1273 aa12.83□□□□□ -0.36
SIX4-202ENST00000554079 RAB3GAP2Q9H2M9 1393 aa12.82□□□□□ -0.36
SIX4-202ENST00000554079 HIRIP3Q9BW71 556 aaPredicted RBP12.82□□□□□ -0.36
SIX4-202ENST00000554079 ZBED9Q6R2W3 1325 aa12.81□□□□□ -0.36
SIX4-202ENST00000554079 NPM2Q86SE8 214 aaKnown RBP12.81□□□□□ -0.36
SIX4-202ENST00000554079 RNF123Q5XPI4 1314 aa12.8□□□□□ -0.36
SIX4-202ENST00000554079 PDE4CQ08493 712 aa12.79□□□□□ -0.36
SIX4-202ENST00000554079 ATAD2BQ9ULI0 1458 aa12.78□□□□□ -0.36
SIX4-202ENST00000554079 SYNJ1O43426 1573 aa12.78□□□□□ -0.36
SIX4-202ENST00000554079 AKNAQ7Z591 1439 aa12.78□□□□□ -0.36
SIX4-202ENST00000554079 SMG6Q86US8 1419 aaKnown RBP12.77□□□□□ -0.36
SIX4-202ENST00000554079 HSP90AA1P07900 732 aaKnown RBP12.77□□□□□ -0.37
SIX4-202ENST00000554079 CCNB3Q8WWL7 1395 aa12.76□□□□□ -0.37
SIX4-202ENST00000554079 BACH2Q9BYV9 841 aa12.74□□□□□ -0.37
SIX4-202ENST00000554079 TCERG1O14776 1098 aaKnown RBP12.74□□□□□ -0.37
SIX4-202ENST00000554079 PDE4AP27815 886 aa12.74□□□□□ -0.37
SIX4-202ENST00000554079 PRDM4Q9UKN5 801 aa12.74□□□□□ -0.37
SIX4-202ENST00000554079 ARAP1Q96P48 1450 aa12.74□□□□□ -0.37
SIX4-202ENST00000554079 DDRGK1Q96HY6 314 aa12.72□□□□□ -0.37
SIX4-202ENST00000554079 NCOA2Q15596 1464 aa12.72□□□□□ -0.37
SIX4-202ENST00000554079 CCDC184Q52MB2 194 aa12.72□□□□□ -0.37
SIX4-202ENST00000554079 NAP1L5Q96NT1 182 aaPredicted RBP12.72□□□□□ -0.37
SIX4-202ENST00000554079 HMGXB3Q12766 1538 aa12.72□□□□□ -0.37
SIX4-202ENST00000554079 CENPJQ9HC77 1338 aaPredicted RBP12.72□□□□□ -0.37
SIX4-202ENST00000554079 KANK4Q5T7N3 995 aaPredicted RBP12.71□□□□□ -0.37
SIX4-202ENST00000554079 TOP2AP11388 1531 aaKnown RBP12.71□□□□□ -0.38
SIX4-202ENST00000554079 SETD5Q9C0A6 1442 aa12.7□□□□□ -0.38
SIX4-202ENST00000554079 CALD1Q05682 793 aaKnown RBP12.7□□□□□ -0.38
SIX4-202ENST00000554079 MS4A1P11836 297 aa12.69□□□□□ -0.38
SIX4-202ENST00000554079 RAPGEF2Q9Y4G8 1499 aa12.69□□□□□ -0.38
SIX4-202ENST00000554079 PDIA4P13667 645 aaKnown RBP12.68□□□□□ -0.38
SIX4-202ENST00000554079 FHAD1B1AJZ9 1412 aa12.67□□□□□ -0.38
SIX4-202ENST00000554079 CLCN1P35523 988 aa12.67□□□□□ -0.38
SIX4-202ENST00000554079 CNTLNQ9NXG0 1405 aa12.66□□□□□ -0.38
SIX4-202ENST00000554079 PNNQ9H307 717 aaKnown RBP12.66□□□□□ -0.38
SIX4-202ENST00000554079 BCL11BQ9C0K0 894 aaPredicted RBP12.65□□□□□ -0.38
SIX4-202ENST00000554079 KDM5BQ9UGL1 1544 aa12.64□□□□□ -0.39
SIX4-202ENST00000554079 FRAT2O75474 233 aaPredicted RBP12.64□□□□□ -0.39
SIX4-202ENST00000554079 NUDCQ9Y266 331 aa12.64□□□□□ -0.39
SIX4-202ENST00000554079 POLR1AO95602 1720 aaPredicted RBP12.64□□□□□ -0.39
SIX4-202ENST00000554079 FAM9BQ8IZU0 186 aa12.62□□□□□ -0.39
SIX4-202ENST00000554079 ABCA5Q8WWZ7 1642 aa12.6□□□□□ -0.39
SIX4-202ENST00000554079 L1TD1Q5T7N2 865 aaKnown RBP12.6□□□□□ -0.39
SIX4-202ENST00000554079 PDCL3Q9H2J4 239 aa12.6□□□□□ -0.39
SIX4-202ENST00000554079 RGS3P49796 1198 aa12.59□□□□□ -0.39
SIX4-202ENST00000554079 ERICH3Q5RHP9 1530 aa12.59□□□□□ -0.39
SIX4-202ENST00000554079 VIRMAQ69YN4 1812 aaKnown RBP12.59□□□□□ -0.39
SIX4-202ENST00000554079 SLC4A3P48751 1232 aa12.59□□□□□ -0.39
SIX4-202ENST00000554079 PRKRIP1Q9H875 184 aaPredicted RBP12.58□□□□□ -0.4
SIX4-202ENST00000554079 MRS2Q9HD23 443 aa12.57□□□□□ -0.4
SIX4-202ENST00000554079 POGKQ9P215 609 aa12.57□□□□□ -0.4
SIX4-202ENST00000554079 TONSLQ96HA7 1378 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms