RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 TSPOAP1O95153 1857 aa25.08■■□□□ 1.61
SHMT2-208ENST00000553868 MAPKBP1O60336 1514 aa25.03■■□□□ 1.6
SHMT2-208ENST00000553868 NPM1P06748 294 aaKnown RBP eCLIP25.02■■□□□ 1.6
SHMT2-208ENST00000553868 FHAD1B1AJZ9 1412 aa24.98■■□□□ 1.59
SHMT2-208ENST00000553868 JPH4Q96JJ6 628 aa24.98■■□□□ 1.59
SHMT2-208ENST00000553868 HECW2Q9P2P5 1572 aa24.97■■□□□ 1.59
SHMT2-208ENST00000553868 ADGRL1O94910 1474 aa24.96■■□□□ 1.59
SHMT2-208ENST00000553868 ADCY10Q96PN6 1610 aa24.96■■□□□ 1.59
SHMT2-208ENST00000553868 WRNQ14191 1432 aaPredicted RBP eCLIP24.85■■□□□ 1.57
SHMT2-208ENST00000553868 RUSC2Q8N2Y8 1516 aa24.81■■□□□ 1.56
SHMT2-208ENST00000553868 ERICH3Q5RHP9 1530 aa24.8■■□□□ 1.56
SHMT2-208ENST00000553868 PPRC1Q5VV67 1664 aaKnown RBP24.74■■□□□ 1.55
SHMT2-208ENST00000553868 FBXO41Q8TF61 875 aa24.73■■□□□ 1.55
SHMT2-208ENST00000553868 COL17A1Q9UMD9 1497 aaPredicted RBP24.7■■□□□ 1.55
SHMT2-208ENST00000553868 BIVM-ERCC5R4GMW8 1640 aa24.65■■□□□ 1.54
SHMT2-208ENST00000553868 TOP2BQ02880 1626 aa24.64■■□□□ 1.54
SHMT2-208ENST00000553868 TTBK1Q5TCY1 1321 aaPredicted RBP24.64■■□□□ 1.54
SHMT2-208ENST00000553868 ASXL2Q76L83 1435 aa24.59■■□□□ 1.53
SHMT2-208ENST00000553868 GLI2P10070 1586 aa24.57■■□□□ 1.52
SHMT2-208ENST00000553868 PTPRGP23470 1445 aa24.54■■□□□ 1.52
SHMT2-208ENST00000553868 ABCC2Q92887 1545 aa24.52■■□□□ 1.52
SHMT2-208ENST00000553868 KIAA0586Q9BVV6 1533 aa24.52■■□□□ 1.52
SHMT2-208ENST00000553868 PLB1Q6P1J6 1458 aa24.51■■□□□ 1.51
SHMT2-208ENST00000553868 CUL7Q14999 1698 aa24.49■■□□□ 1.51
SHMT2-208ENST00000553868 MAP3K4Q9Y6R4 1608 aa24.44■■□□□ 1.5
SHMT2-208ENST00000553868 LMTK3Q96Q04 1460 aa24.43■■□□□ 1.5
SHMT2-208ENST00000553868 EPRSP07814 1512 aaKnown RBP24.42■■□□□ 1.5
SHMT2-208ENST00000553868 TEX14Q8IWB6 1497 aa24.38■■□□□ 1.49
SHMT2-208ENST00000553868 TNIKQ9UKE5 1360 aa24.38■■□□□ 1.49
SHMT2-208ENST00000553868 UHRF1BP1LA0JNW5 1464 aa24.32■■□□□ 1.48
SHMT2-208ENST00000553868 IGF1RP08069 1367 aa24.31■■□□□ 1.48
SHMT2-208ENST00000553868 CHIC1Q5VXU3 224 aa24.31■■□□□ 1.48
SHMT2-208ENST00000553868 UACAQ9BZF9 1416 aa24.3■■□□□ 1.48
SHMT2-208ENST00000553868 KIF21BO75037 1637 aa24.3■■□□□ 1.48
SHMT2-208ENST00000553868 CARMIL2Q6F5E8 1435 aa24.29■■□□□ 1.48
SHMT2-208ENST00000553868 ILDR2Q71H61 639 aa24.27■■□□□ 1.48
SHMT2-208ENST00000553868 KDM5BQ9UGL1 1544 aa24.25■■□□□ 1.47
SHMT2-208ENST00000553868 ZCCHC11Q5TAX3 1644 aaKnown RBP24.25■■□□□ 1.47
SHMT2-208ENST00000553868 SOCS7O14512 581 aa24.18■■□□□ 1.46
SHMT2-208ENST00000553868 PTPRMP28827 1452 aa24.18■■□□□ 1.46
SHMT2-208ENST00000553868 DISP1Q96F81 1524 aa24.17■■□□□ 1.46
SHMT2-208ENST00000553868 IQGAP2Q13576 1575 aa24.16■■□□□ 1.46
SHMT2-208ENST00000553868 WDR7Q9Y4E6 1490 aa24.14■■□□□ 1.46
SHMT2-208ENST00000553868 CD109Q6YHK3 1445 aa24.13■■□□□ 1.45
SHMT2-208ENST00000553868 KIF27Q86VH2 1401 aa24.12■■□□□ 1.45
SHMT2-208ENST00000553868 DISP3Q9P2K9 1392 aa24.12■■□□□ 1.45
SHMT2-208ENST00000553868 MAGI3Q5TCQ9 1506 aa24.11■■□□□ 1.45
SHMT2-208ENST00000553868 CARMIL1Q5VZK9 1371 aa24.11■■□□□ 1.45
SHMT2-208ENST00000553868 PCF11O94913 1555 aaKnown RBP24.1■■□□□ 1.45
SHMT2-208ENST00000553868 ADAMTSL3P82987 1691 aa24.1■■□□□ 1.45
SHMT2-208ENST00000553868 KCNH8Q96L42 1107 aa24.09■■□□□ 1.45
SHMT2-208ENST00000553868 CFAP43Q8NDM7 1665 aa24.05■■□□□ 1.44
SHMT2-208ENST00000553868 HSPA2P54652 639 aa24.02■■□□□ 1.44
SHMT2-208ENST00000553868 CERKQ8TCT0 537 aa24.01■■□□□ 1.43
SHMT2-208ENST00000553868 MADDQ8WXG6 1647 aa23.99■■□□□ 1.43
SHMT2-208ENST00000553868 KIAA0556O60303 1618 aa23.98■■□□□ 1.43
SHMT2-208ENST00000553868 UGGT2Q9NYU1 1516 aa23.95■■□□□ 1.43
SHMT2-208ENST00000553868 ARAP3Q8WWN8 1544 aa23.94■■□□□ 1.42
SHMT2-208ENST00000553868 BCORL1Q5H9F3 1711 aa23.94■■□□□ 1.42
SHMT2-208ENST00000553868 PLPPR3Q6T4P5 718 aa23.91■■□□□ 1.42
SHMT2-208ENST00000553868 ARID4BQ4LE39 1312 aaPredicted RBP23.9■■□□□ 1.42
SHMT2-208ENST00000553868 RAPGEF3O95398 923 aa23.9■■□□□ 1.42
SHMT2-208ENST00000553868 RIMS1Q86UR5 1692 aaKnown RBP23.88■■□□□ 1.41
SHMT2-208ENST00000553868 ABCA8O94911 1581 aa23.82■■□□□ 1.4
SHMT2-208ENST00000553868 SPATA31D1Q6ZQQ2 1576 aa23.82■■□□□ 1.4
SHMT2-208ENST00000553868 ARID3CA6NKF2 412 aa23.81■■□□□ 1.4
SHMT2-208ENST00000553868 FRMPD1Q5SYB0 1578 aa23.78■■□□□ 1.4
SHMT2-208ENST00000553868 RAPGEF2Q9Y4G8 1499 aa23.74■■□□□ 1.39
SHMT2-208ENST00000553868 PHLDB1Q86UU1 1377 aa23.7■■□□□ 1.38
SHMT2-208ENST00000553868 ABCA9Q8IUA7 1624 aa23.7■■□□□ 1.38
SHMT2-208ENST00000553868 EEA1Q15075 1411 aa23.67■■□□□ 1.38
SHMT2-208ENST00000553868 ARHGEF40Q8TER5 1519 aa23.66■■□□□ 1.38
SHMT2-208ENST00000553868 NEO1Q92859 1461 aa23.65■■□□□ 1.38
SHMT2-208ENST00000553868 ATP10BO94823 1461 aa23.64■■□□□ 1.38
SHMT2-208ENST00000553868 SIGLEC1Q9BZZ2 1709 aa23.64■■□□□ 1.37
SHMT2-208ENST00000553868 GOLGA3Q08378 1498 aa23.62■■□□□ 1.37
SHMT2-208ENST00000553868 CTTNBP2Q8WZ74 1663 aa23.61■■□□□ 1.37
SHMT2-208ENST00000553868 MLECQ14165 292 aa23.6■■□□□ 1.37
SHMT2-208ENST00000553868 FAM9AQ8IZU1 332 aaPredicted RBP23.56■■□□□ 1.36
SHMT2-208ENST00000553868 RICTORQ6R327 1708 aa23.56■■□□□ 1.36
SHMT2-208ENST00000553868 STRCQ7RTU9 1775 aa23.55■■□□□ 1.36
SHMT2-208ENST00000553868 POGZQ7Z3K3 1410 aa23.54■■□□□ 1.36
SHMT2-208ENST00000553868 FANCAO15360 1455 aa23.54■■□□□ 1.36
SHMT2-208ENST00000553868 FER1L4A9Z1Z3 1794 aa23.53■■□□□ 1.36
SHMT2-208ENST00000553868 YEATS2Q9ULM3 1422 aa23.53■■□□□ 1.36
SHMT2-208ENST00000553868 P3H3Q8IVL6 736 aa23.53■■□□□ 1.36
SHMT2-208ENST00000553868 DENND4BO75064 1496 aaPredicted RBP23.52■■□□□ 1.36
SHMT2-208ENST00000553868 TTC37Q6PGP7 1564 aa23.51■■□□□ 1.35
SHMT2-208ENST00000553868 AKNAQ7Z591 1439 aa23.5■■□□□ 1.35
SHMT2-208ENST00000553868 PREX1Q8TCU6 1659 aa23.49■■□□□ 1.35
SHMT2-208ENST00000553868 CEBPAP49715 358 aaPredicted RBP23.49■■□□□ 1.35
SHMT2-208ENST00000553868 CSRNP3Q8WYN3 585 aa23.47■■□□□ 1.35
SHMT2-208ENST00000553868 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.46■■□□□ 1.35
SHMT2-208ENST00000553868 HNRNPUL2Q1KMD3 747 aaKnown RBP23.46■■□□□ 1.35
SHMT2-208ENST00000553868 FHOD3Q2V2M9 1422 aa23.46■■□□□ 1.35
SHMT2-208ENST00000553868 DMRT2Q9Y5R5 561 aa23.46■■□□□ 1.35
SHMT2-208ENST00000553868 ZFYVE16Q7Z3T8 1539 aa23.45■■□□□ 1.34
SHMT2-208ENST00000553868 ZMYM4Q5VZL5 1548 aa23.41■■□□□ 1.34
SHMT2-208ENST00000553868 EFCAB5A4FU69 1503 aa23.39■■□□□ 1.34
SHMT2-208ENST00000553868 LTBP4Q8N2S1 1624 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms