RNA–Protein interactions for RNA: ENST00000553039.1

CKAP4-203, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 4

Gene CKAP4, Length 573 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-203ENST00000553039 PRDM2Q13029 1718 aa9.61□□□□□ -0.87
CKAP4-203ENST00000553039 ERCC6L2Q5T890 1561 aa9.59□□□□□ -0.87
CKAP4-203ENST00000553039 LMTK3Q96Q04 1460 aa9.59□□□□□ -0.87
CKAP4-203ENST00000553039 FGD5Q6ZNL6 1462 aa9.58□□□□□ -0.88
CKAP4-203ENST00000553039 PRG4Q92954 1404 aaPredicted RBP9.56□□□□□ -0.88
CKAP4-203ENST00000553039 KDM6BO15054 1643 aa9.56□□□□□ -0.88
CKAP4-203ENST00000553039 CEP170Q5SW79 1584 aa9.54□□□□□ -0.88
CKAP4-203ENST00000553039 ADGRL1O94910 1474 aa9.54□□□□□ -0.88
CKAP4-203ENST00000553039 NUP160Q12769 1436 aa9.54□□□□□ -0.88
CKAP4-203ENST00000553039 KIF13AQ9H1H9 1805 aa9.54□□□□□ -0.88
CKAP4-203ENST00000553039 GRIN2AQ12879 1464 aa9.53□□□□□ -0.88
CKAP4-203ENST00000553039 NPM3O75607 178 aaKnown RBP9.52□□□□□ -0.89
CKAP4-203ENST00000553039 HECW2Q9P2P5 1572 aa9.52□□□□□ -0.89
CKAP4-203ENST00000553039 MAPKBP1O60336 1514 aa9.51□□□□□ -0.89
CKAP4-203ENST00000553039 FHAD1B1AJZ9 1412 aa9.49□□□□□ -0.89
CKAP4-203ENST00000553039 SLC24A1O60721 1099 aa9.49□□□□□ -0.89
CKAP4-203ENST00000553039 DISP3Q9P2K9 1392 aa9.48□□□□□ -0.89
CKAP4-203ENST00000553039 ABCA10Q8WWZ4 1543 aa9.47□□□□□ -0.89
CKAP4-203ENST00000553039 ILDR2Q71H61 639 aa9.47□□□□□ -0.89
CKAP4-203ENST00000553039 DIP2BQ9P265 1576 aa9.46□□□□□ -0.9
CKAP4-203ENST00000553039 ZBTB22O15209 634 aa9.45□□□□□ -0.9
CKAP4-203ENST00000553039 CUX1P39880 1505 aa9.45□□□□□ -0.9
CKAP4-203ENST00000553039 SHROOM2Q13796 1616 aa9.43□□□□□ -0.9
CKAP4-203ENST00000553039 WRNQ14191 1432 aaPredicted RBP eCLIP9.43□□□□□ -0.9
CKAP4-203ENST00000553039 PIAS4Q8N2W9 510 aaPredicted RBP9.42□□□□□ -0.9
CKAP4-203ENST00000553039 CERKQ8TCT0 537 aa9.42□□□□□ -0.9
CKAP4-203ENST00000553039 PTPRGP23470 1445 aa9.41□□□□□ -0.9
CKAP4-203ENST00000553039 PLB1Q6P1J6 1458 aa9.4□□□□□ -0.9
CKAP4-203ENST00000553039 TTBK1Q5TCY1 1321 aaPredicted RBP9.4□□□□□ -0.9
CKAP4-203ENST00000553039 PBRM1Q86U86 1689 aa9.39□□□□□ -0.91
CKAP4-203ENST00000553039 TSPOAP1O95153 1857 aa9.39□□□□□ -0.91
CKAP4-203ENST00000553039 TOP2BQ02880 1626 aa9.38□□□□□ -0.91
CKAP4-203ENST00000553039 TEX14Q8IWB6 1497 aa9.37□□□□□ -0.91
CKAP4-203ENST00000553039 COL17A1Q9UMD9 1497 aaPredicted RBP9.37□□□□□ -0.91
CKAP4-203ENST00000553039 ABCA5Q8WWZ7 1642 aa9.36□□□□□ -0.91
CKAP4-203ENST00000553039 ASXL2Q76L83 1435 aa9.36□□□□□ -0.91
CKAP4-203ENST00000553039 AMER1Q5JTC6 1135 aaPredicted RBP9.34□□□□□ -0.91
CKAP4-203ENST00000553039 ADCY10Q96PN6 1610 aa9.34□□□□□ -0.91
CKAP4-203ENST00000553039 GLI2P10070 1586 aa9.33□□□□□ -0.92
CKAP4-203ENST00000553039 ADAMTS12P58397 1594 aa9.33□□□□□ -0.92
CKAP4-203ENST00000553039 ERICH3Q5RHP9 1530 aa9.33□□□□□ -0.92
CKAP4-203ENST00000553039 CNKSR2Q8WXI2 1034 aa9.32□□□□□ -0.92
CKAP4-203ENST00000553039 TNIKQ9UKE5 1360 aa9.32□□□□□ -0.92
CKAP4-203ENST00000553039 CARMIL2Q6F5E8 1435 aa9.31□□□□□ -0.92
CKAP4-203ENST00000553039 ABCC2Q92887 1545 aa9.31□□□□□ -0.92
CKAP4-203ENST00000553039 KIAA0586Q9BVV6 1533 aa9.31□□□□□ -0.92
CKAP4-203ENST00000553039 DMRT2Q9Y5R5 561 aa9.31□□□□□ -0.92
CKAP4-203ENST00000553039 ARID4BQ4LE39 1312 aaPredicted RBP9.3□□□□□ -0.92
CKAP4-203ENST00000553039 KCNH8Q96L42 1107 aa9.29□□□□□ -0.92
CKAP4-203ENST00000553039 RTN4Q9NQC3 1192 aaKnown RBP9.29□□□□□ -0.92
CKAP4-203ENST00000553039 UACAQ9BZF9 1416 aa9.27□□□□□ -0.93
CKAP4-203ENST00000553039 EPRSP07814 1512 aaKnown RBP9.26□□□□□ -0.93
CKAP4-203ENST00000553039 HSPA2P54652 639 aa9.26□□□□□ -0.93
CKAP4-203ENST00000553039 FAM9AQ8IZU1 332 aaPredicted RBP9.26□□□□□ -0.93
CKAP4-203ENST00000553039 PTPRMP28827 1452 aa9.26□□□□□ -0.93
CKAP4-203ENST00000553039 CD109Q6YHK3 1445 aa9.25□□□□□ -0.93
CKAP4-203ENST00000553039 FOXD4L1Q9NU39 408 aa9.25□□□□□ -0.93
CKAP4-203ENST00000553039 UHRF1BP1LA0JNW5 1464 aa9.25□□□□□ -0.93
CKAP4-203ENST00000553039 PHLDB1Q86UU1 1377 aa9.23□□□□□ -0.93
CKAP4-203ENST00000553039 IGF1RP08069 1367 aa9.22□□□□□ -0.93
CKAP4-203ENST00000553039 PPRC1Q5VV67 1664 aaKnown RBP9.2□□□□□ -0.94
CKAP4-203ENST00000553039 SCAF1Q9H7N4 1312 aaKnown RBP9.2□□□□□ -0.94
CKAP4-203ENST00000553039 RUSC2Q8N2Y8 1516 aa9.2□□□□□ -0.94
CKAP4-203ENST00000553039 MAGI3Q5TCQ9 1506 aa9.19□□□□□ -0.94
CKAP4-203ENST00000553039 KDM5BQ9UGL1 1544 aa9.19□□□□□ -0.94
CKAP4-203ENST00000553039 PCF11O94913 1555 aaKnown RBP9.19□□□□□ -0.94
CKAP4-203ENST00000553039 RAPGEF3O95398 923 aa9.17□□□□□ -0.94
CKAP4-203ENST00000553039 MAP3K4Q9Y6R4 1608 aa9.16□□□□□ -0.94
CKAP4-203ENST00000553039 CARMIL1Q5VZK9 1371 aa9.15□□□□□ -0.94
CKAP4-203ENST00000553039 ARAP3Q8WWN8 1544 aa9.15□□□□□ -0.95
CKAP4-203ENST00000553039 WDR7Q9Y4E6 1490 aa9.15□□□□□ -0.95
CKAP4-203ENST00000553039 POGZQ7Z3K3 1410 aa9.13□□□□□ -0.95
CKAP4-203ENST00000553039 KIF27Q86VH2 1401 aa9.13□□□□□ -0.95
CKAP4-203ENST00000553039 YEATS2Q9ULM3 1422 aa9.12□□□□□ -0.95
CKAP4-203ENST00000553039 SPATA31D1Q6ZQQ2 1576 aa9.12□□□□□ -0.95
CKAP4-203ENST00000553039 ADAMTSL3P82987 1691 aa9.1□□□□□ -0.95
CKAP4-203ENST00000553039 CUL7Q14999 1698 aa9.1□□□□□ -0.95
CKAP4-203ENST00000553039 UBAP1LF5GYI3 381 aa9.08□□□□□ -0.96
CKAP4-203ENST00000553039 MLECQ14165 292 aa9.08□□□□□ -0.96
CKAP4-203ENST00000553039 KIF21BO75037 1637 aa9.08□□□□□ -0.96
CKAP4-203ENST00000553039 BIVM-ERCC5R4GMW8 1640 aa9.08□□□□□ -0.96
CKAP4-203ENST00000553039 SUPT5HO00267 1087 aaKnown RBP9.06□□□□□ -0.96
CKAP4-203ENST00000553039 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.05□□□□□ -0.96
CKAP4-203ENST00000553039 HNRNPUL2Q1KMD3 747 aaKnown RBP9.05□□□□□ -0.96
CKAP4-203ENST00000553039 DISP1Q96F81 1524 aa9.05□□□□□ -0.96
CKAP4-203ENST00000553039 ZCCHC11Q5TAX3 1644 aaKnown RBP9.04□□□□□ -0.96
CKAP4-203ENST00000553039 CFAP43Q8NDM7 1665 aa9.04□□□□□ -0.96
CKAP4-203ENST00000553039 CEBPAP49715 358 aaPredicted RBP9.03□□□□□ -0.96
CKAP4-203ENST00000553039 PTPRTO14522 1441 aa9.03□□□□□ -0.96
CKAP4-203ENST00000553039 IQGAP2Q13576 1575 aa9.03□□□□□ -0.96
CKAP4-203ENST00000553039 NEO1Q92859 1461 aa9.02□□□□□ -0.96
CKAP4-203ENST00000553039 AKNAQ7Z591 1439 aa9.02□□□□□ -0.97
CKAP4-203ENST00000553039 IQSEC2Q5JU85 1478 aa9.02□□□□□ -0.97
CKAP4-203ENST00000553039 BCORL1Q5H9F3 1711 aa9.01□□□□□ -0.97
CKAP4-203ENST00000553039 ESF1Q9H501 851 aaKnown RBP9.01□□□□□ -0.97
CKAP4-203ENST00000553039 MADDQ8WXG6 1647 aa9.01□□□□□ -0.97
CKAP4-203ENST00000553039 ARID3CA6NKF2 412 aa9□□□□□ -0.97
CKAP4-203ENST00000553039 PLEKHD1A6NEE1 506 aa8.99□□□□□ -0.97
CKAP4-203ENST00000553039 TOM1O60784 492 aa8.99□□□□□ -0.97
CKAP4-203ENST00000553039 RNF216Q9NWF9 866 aaPredicted RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms