RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-210ENST00000551981 RUSC2Q8N2Y8 1516 aa25.21■■□□□ 1.63
CHMP1A-210ENST00000551981 NPM1P06748 294 aaKnown RBP eCLIP25.12■■□□□ 1.61
CHMP1A-210ENST00000551981 MAPKBP1O60336 1514 aa25.07■■□□□ 1.6
CHMP1A-210ENST00000551981 ABCC10Q5T3U5 1492 aa25.07■■□□□ 1.6
CHMP1A-210ENST00000551981 CUL7Q14999 1698 aa25.05■■□□□ 1.6
CHMP1A-210ENST00000551981 FAM69CQ0P6D2 419 aa25.05■■□□□ 1.6
CHMP1A-210ENST00000551981 KIAA0586Q9BVV6 1533 aa25.04■■□□□ 1.6
CHMP1A-210ENST00000551981 ADCY10Q96PN6 1610 aa25.04■■□□□ 1.6
CHMP1A-210ENST00000551981 KIF27Q86VH2 1401 aa25.03■■□□□ 1.6
CHMP1A-210ENST00000551981 DIP2BQ9P265 1576 aa25.01■■□□□ 1.59
CHMP1A-210ENST00000551981 IGF1RP08069 1367 aa25■■□□□ 1.59
CHMP1A-210ENST00000551981 KDM6BO15054 1643 aa24.88■■□□□ 1.57
CHMP1A-210ENST00000551981 TSPOAP1O95153 1857 aa24.87■■□□□ 1.57
CHMP1A-210ENST00000551981 PTPRGP23470 1445 aa24.86■■□□□ 1.57
CHMP1A-210ENST00000551981 CARMIL1Q5VZK9 1371 aa24.84■■□□□ 1.57
CHMP1A-210ENST00000551981 CARMIL2Q6F5E8 1435 aa24.84■■□□□ 1.57
CHMP1A-210ENST00000551981 TNIKQ9UKE5 1360 aa24.8■■□□□ 1.56
CHMP1A-210ENST00000551981 TTBK1Q5TCY1 1321 aaPredicted RBP24.79■■□□□ 1.56
CHMP1A-210ENST00000551981 IQGAP2Q13576 1575 aa24.79■■□□□ 1.56
CHMP1A-210ENST00000551981 ABCC2Q92887 1545 aa24.77■■□□□ 1.56
CHMP1A-210ENST00000551981 PLB1Q6P1J6 1458 aa24.72■■□□□ 1.55
CHMP1A-210ENST00000551981 ASXL2Q76L83 1435 aa24.7■■□□□ 1.55
CHMP1A-210ENST00000551981 UHRF1BP1LA0JNW5 1464 aa24.7■■□□□ 1.54
CHMP1A-210ENST00000551981 GLI2P10070 1586 aa24.69■■□□□ 1.54
CHMP1A-210ENST00000551981 KDM4FA0A1W2PPD8 638 aa24.67■■□□□ 1.54
CHMP1A-210ENST00000551981 UACAQ9BZF9 1416 aa24.67■■□□□ 1.54
CHMP1A-210ENST00000551981 DISP1Q96F81 1524 aa24.65■■□□□ 1.54
CHMP1A-210ENST00000551981 PPRC1Q5VV67 1664 aaKnown RBP24.63■■□□□ 1.53
CHMP1A-210ENST00000551981 RAPGEF2Q9Y4G8 1499 aa24.61■■□□□ 1.53
CHMP1A-210ENST00000551981 UGGT2Q9NYU1 1516 aa24.6■■□□□ 1.53
CHMP1A-210ENST00000551981 KDM5BQ9UGL1 1544 aa24.58■■□□□ 1.53
CHMP1A-210ENST00000551981 KIAA0556O60303 1618 aa24.56■■□□□ 1.52
CHMP1A-210ENST00000551981 EPRSP07814 1512 aaKnown RBP24.56■■□□□ 1.52
CHMP1A-210ENST00000551981 ZCCHC11Q5TAX3 1644 aaKnown RBP24.55■■□□□ 1.52
CHMP1A-210ENST00000551981 MAP3K4Q9Y6R4 1608 aa24.54■■□□□ 1.52
CHMP1A-210ENST00000551981 TEX14Q8IWB6 1497 aa24.52■■□□□ 1.52
CHMP1A-210ENST00000551981 CTTNBP2Q8WZ74 1663 aa24.47■■□□□ 1.51
CHMP1A-210ENST00000551981 ADGRL1O94910 1474 aa24.47■■□□□ 1.51
CHMP1A-210ENST00000551981 COL17A1Q9UMD9 1497 aaPredicted RBP24.44■■□□□ 1.5
CHMP1A-210ENST00000551981 WDR7Q9Y4E6 1490 aa24.44■■□□□ 1.5
CHMP1A-210ENST00000551981 GOLGA3Q08378 1498 aa24.42■■□□□ 1.5
CHMP1A-210ENST00000551981 CFAP43Q8NDM7 1665 aa24.35■■□□□ 1.49
CHMP1A-210ENST00000551981 ABCA8O94911 1581 aa24.33■■□□□ 1.49
CHMP1A-210ENST00000551981 CD109Q6YHK3 1445 aa24.31■■□□□ 1.48
CHMP1A-210ENST00000551981 MAGI3Q5TCQ9 1506 aa24.3■■□□□ 1.48
CHMP1A-210ENST00000551981 KCNH8Q96L42 1107 aa24.28■■□□□ 1.48
CHMP1A-210ENST00000551981 PRXQ9BXM0 1461 aa24.27■■□□□ 1.48
CHMP1A-210ENST00000551981 FAM9AQ8IZU1 332 aaPredicted RBP24.26■■□□□ 1.47
CHMP1A-210ENST00000551981 HECW2Q9P2P5 1572 aa24.22■■□□□ 1.47
CHMP1A-210ENST00000551981 ILDR1Q86SU0 546 aaPredicted RBP24.2■■□□□ 1.46
CHMP1A-210ENST00000551981 ARAP3Q8WWN8 1544 aa24.13■■□□□ 1.45
CHMP1A-210ENST00000551981 KIF21BO75037 1637 aa24.12■■□□□ 1.45
CHMP1A-210ENST00000551981 ATP10BO94823 1461 aa24.11■■□□□ 1.45
CHMP1A-210ENST00000551981 ARID3CA6NKF2 412 aa24.1■■□□□ 1.45
CHMP1A-210ENST00000551981 P3H3Q8IVL6 736 aa24.1■■□□□ 1.45
CHMP1A-210ENST00000551981 ABCA9Q8IUA7 1624 aa24.09■■□□□ 1.45
CHMP1A-210ENST00000551981 SAMD9Q5K651 1589 aa24.08■■□□□ 1.44
CHMP1A-210ENST00000551981 PHLDB1Q86UU1 1377 aa24.07■■□□□ 1.44
CHMP1A-210ENST00000551981 RAPGEF6Q8TEU7 1601 aa24.05■■□□□ 1.44
CHMP1A-210ENST00000551981 CSRNP3Q8WYN3 585 aa24.02■■□□□ 1.44
CHMP1A-210ENST00000551981 NEO1Q92859 1461 aa24■■□□□ 1.43
CHMP1A-210ENST00000551981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.99■■□□□ 1.43
CHMP1A-210ENST00000551981 HNRNPUL2Q1KMD3 747 aaKnown RBP23.99■■□□□ 1.43
CHMP1A-210ENST00000551981 ADAMTSL3P82987 1691 aa23.93■■□□□ 1.42
CHMP1A-210ENST00000551981 RAPGEF3O95398 923 aa23.93■■□□□ 1.42
CHMP1A-210ENST00000551981 NUP153P49790 1475 aaKnown RBP23.92■■□□□ 1.42
CHMP1A-210ENST00000551981 EEA1Q15075 1411 aa23.92■■□□□ 1.42
CHMP1A-210ENST00000551981 PTPRMP28827 1452 aa23.91■■□□□ 1.42
CHMP1A-210ENST00000551981 FRMPD1Q5SYB0 1578 aa23.89■■□□□ 1.41
CHMP1A-210ENST00000551981 FHOD3Q2V2M9 1422 aa23.87■■□□□ 1.41
CHMP1A-210ENST00000551981 RANGAP1P46060 587 aaPredicted RBP23.87■■□□□ 1.41
CHMP1A-210ENST00000551981 BCORL1Q5H9F3 1711 aa23.87■■□□□ 1.41
CHMP1A-210ENST00000551981 ARID4BQ4LE39 1312 aaPredicted RBP23.85■■□□□ 1.41
CHMP1A-210ENST00000551981 PLEKHD1A6NEE1 506 aa23.85■■□□□ 1.41
CHMP1A-210ENST00000551981 CFAP74Q9C0B2 1584 aa23.84■■□□□ 1.41
CHMP1A-210ENST00000551981 MADDQ8WXG6 1647 aa23.83■■□□□ 1.41
CHMP1A-210ENST00000551981 ARHGEF40Q8TER5 1519 aa23.82■■□□□ 1.4
CHMP1A-210ENST00000551981 DENND4BO75064 1496 aaPredicted RBP23.81■■□□□ 1.4
CHMP1A-210ENST00000551981 EFCAB5A4FU69 1503 aa23.81■■□□□ 1.4
CHMP1A-210ENST00000551981 RICTORQ6R327 1708 aa23.81■■□□□ 1.4
CHMP1A-210ENST00000551981 AKNAQ7Z591 1439 aa23.78■■□□□ 1.4
CHMP1A-210ENST00000551981 FANCAO15360 1455 aa23.78■■□□□ 1.4
CHMP1A-210ENST00000551981 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.76■■□□□ 1.39
CHMP1A-210ENST00000551981 PCF11O94913 1555 aaKnown RBP23.76■■□□□ 1.39
CHMP1A-210ENST00000551981 RIMS1Q86UR5 1692 aaKnown RBP23.74■■□□□ 1.39
CHMP1A-210ENST00000551981 FBXO41Q8TF61 875 aa23.74■■□□□ 1.39
CHMP1A-210ENST00000551981 TTC37Q6PGP7 1564 aa23.74■■□□□ 1.39
CHMP1A-210ENST00000551981 POGZQ7Z3K3 1410 aa23.72■■□□□ 1.39
CHMP1A-210ENST00000551981 ZMYM4Q5VZL5 1548 aa23.72■■□□□ 1.39
CHMP1A-210ENST00000551981 LMTK3Q96Q04 1460 aa23.7■■□□□ 1.38
CHMP1A-210ENST00000551981 ZFYVE16Q7Z3T8 1539 aa23.69■■□□□ 1.38
CHMP1A-210ENST00000551981 MAGI2Q86UL8 1455 aa23.68■■□□□ 1.38
CHMP1A-210ENST00000551981 CDK13Q14004 1512 aaKnown RBP23.67■■□□□ 1.38
CHMP1A-210ENST00000551981 HECW1Q76N89 1606 aa23.62■■□□□ 1.37
CHMP1A-210ENST00000551981 YEATS2Q9ULM3 1422 aa23.62■■□□□ 1.37
CHMP1A-210ENST00000551981 PLCH2O75038 1416 aa23.61■■□□□ 1.37
CHMP1A-210ENST00000551981 SIGLEC1Q9BZZ2 1709 aa23.6■■□□□ 1.37
CHMP1A-210ENST00000551981 FMN1Q68DA7 1419 aa23.59■■□□□ 1.37
CHMP1A-210ENST00000551981 SCAPERQ9BY12 1400 aa23.59■■□□□ 1.37
CHMP1A-210ENST00000551981 PLPPR3Q6T4P5 718 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms