RNA–Protein interactions for RNA: ENST00000550587.5

DEPDC4-209, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,165 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-209ENST00000550587 MNX1P50219 401 aaPredicted RBP11.48□□□□□ -0.57
DEPDC4-209ENST00000550587 ZNF579Q8NAF0 562 aaKnown RBP11.47□□□□□ -0.57
DEPDC4-209ENST00000550587 LHX8Q68G74 356 aa11.46□□□□□ -0.57
DEPDC4-209ENST00000550587 ERCC6Q03468 1493 aa11.45□□□□□ -0.58
DEPDC4-209ENST00000550587 POTEIP0CG38 1075 aa11.45□□□□□ -0.58
DEPDC4-209ENST00000550587 NCAPD3P42695 1498 aa11.44□□□□□ -0.58
DEPDC4-209ENST00000550587 NPM1P06748 294 aaKnown RBP eCLIP11.42□□□□□ -0.58
DEPDC4-209ENST00000550587 CUX2O14529 1486 aa11.42□□□□□ -0.58
DEPDC4-209ENST00000550587 CLCN6P51797 869 aa11.41□□□□□ -0.58
DEPDC4-209ENST00000550587 SMARCA2P51531 1590 aa11.4□□□□□ -0.58
DEPDC4-209ENST00000550587 PAK3O75914 559 aaPredicted RBP11.38□□□□□ -0.59
DEPDC4-209ENST00000550587 PHF12Q96QT6 1004 aa11.38□□□□□ -0.59
DEPDC4-209ENST00000550587 ATAD2BQ9ULI0 1458 aa11.38□□□□□ -0.59
DEPDC4-209ENST00000550587 GALR2O43603 387 aaPredicted RBP11.37□□□□□ -0.59
DEPDC4-209ENST00000550587 DCBLD2Q96PD2 775 aa11.35□□□□□ -0.59
DEPDC4-209ENST00000550587 HMGXB3Q12766 1538 aa11.35□□□□□ -0.59
DEPDC4-209ENST00000550587 SMARCA4P51532 1647 aa11.34□□□□□ -0.59
DEPDC4-209ENST00000550587 TRIM41Q8WV44 630 aa11.32□□□□□ -0.6
DEPDC4-209ENST00000550587 BAZ1AQ9NRL2 1556 aaPredicted RBP11.32□□□□□ -0.6
DEPDC4-209ENST00000550587 BAZ1BQ9UIG0 1483 aaKnown RBP11.32□□□□□ -0.6
DEPDC4-209ENST00000550587 FKBP8Q14318 412 aa11.31□□□□□ -0.6
DEPDC4-209ENST00000550587 MIER1Q8N108 512 aa11.3□□□□□ -0.6
DEPDC4-209ENST00000550587 TSPYL2Q9H2G4 693 aaPredicted RBP11.28□□□□□ -0.6
DEPDC4-209ENST00000550587 NESP48681 1621 aa11.24□□□□□ -0.61
DEPDC4-209ENST00000550587 PLEKHG5O94827 1062 aa11.23□□□□□ -0.61
DEPDC4-209ENST00000550587 LAMC3Q9Y6N6 1575 aa11.22□□□□□ -0.61
DEPDC4-209ENST00000550587 PEG3Q9GZU2 1588 aa11.21□□□□□ -0.61
DEPDC4-209ENST00000550587 PDS5BQ9NTI5 1447 aa11.21□□□□□ -0.61
DEPDC4-209ENST00000550587 MS4A3Q96HJ5 214 aa11.21□□□□□ -0.61
DEPDC4-209ENST00000550587 PLCD3Q8N3E9 789 aa11.2□□□□□ -0.62
DEPDC4-209ENST00000550587 CCDC61Q9Y6R9 512 aa11.19□□□□□ -0.62
DEPDC4-209ENST00000550587 RASEFQ8IZ41 740 aa11.18□□□□□ -0.62
DEPDC4-209ENST00000550587 MROH2BQ7Z745 1585 aa11.16□□□□□ -0.62
DEPDC4-209ENST00000550587 PELP1Q8IZL8 1130 aaKnown RBP11.16□□□□□ -0.62
DEPDC4-209ENST00000550587 THOC2Q8NI27 1593 aaKnown RBP11.13□□□□□ -0.63
DEPDC4-209ENST00000550587 KIF12Q96FN5 646 aa11.13□□□□□ -0.63
DEPDC4-209ENST00000550587 CADPSQ9ULU8 1353 aa11.12□□□□□ -0.63
DEPDC4-209ENST00000550587 KIF21AQ7Z4S6 1674 aa11.11□□□□□ -0.63
DEPDC4-209ENST00000550587 POTEB2H3BUK9 544 aa11.09□□□□□ -0.63
DEPDC4-209ENST00000550587 ATMINO43313 823 aaPredicted RBP11.09□□□□□ -0.63
DEPDC4-209ENST00000550587 ASTLQ6HA08 431 aaPredicted RBP11.09□□□□□ -0.63
DEPDC4-209ENST00000550587 MAP3K13O43283 966 aa11.08□□□□□ -0.64
DEPDC4-209ENST00000550587 NUBP1P53384 320 aa11.08□□□□□ -0.64
DEPDC4-209ENST00000550587 TRPC6Q9Y210 931 aa11.07□□□□□ -0.64
DEPDC4-209ENST00000550587 ZBTB47Q9UFB7 747 aaPredicted RBP11.06□□□□□ -0.64
DEPDC4-209ENST00000550587 MRC2Q9UBG0 1479 aa11.06□□□□□ -0.64
DEPDC4-209ENST00000550587 ATN1P54259 1190 aaPredicted RBP11.03□□□□□ -0.64
DEPDC4-209ENST00000550587 WIZO95785 1651 aa11.03□□□□□ -0.64
DEPDC4-209ENST00000550587 CEP164Q9UPV0 1460 aa11.02□□□□□ -0.65
DEPDC4-209ENST00000550587 PLSCR2Q9NRY7 297 aa11.02□□□□□ -0.65
DEPDC4-209ENST00000550587 METRNQ9UJH8 293 aa11.02□□□□□ -0.65
DEPDC4-209ENST00000550587 OTUD5Q96G74 571 aa11.01□□□□□ -0.65
DEPDC4-209ENST00000550587 BMP2KQ9NSY1 1161 aaPredicted RBP11.01□□□□□ -0.65
DEPDC4-209ENST00000550587 SLC39A7Q92504 469 aa11□□□□□ -0.65
DEPDC4-209ENST00000550587 FBXO3Q9UK99 471 aa11□□□□□ -0.65
DEPDC4-209ENST00000550587 WDR62O43379 1518 aa10.99□□□□□ -0.65
DEPDC4-209ENST00000550587 C7P10643 843 aa10.98□□□□□ -0.65
DEPDC4-209ENST00000550587 FANCD2Q9BXW9 1451 aa10.98□□□□□ -0.65
DEPDC4-209ENST00000550587 FAM212AQ96EL1 285 aa10.96□□□□□ -0.65
DEPDC4-209ENST00000550587 PCDHB13Q9Y5F0 798 aa10.96□□□□□ -0.65
DEPDC4-209ENST00000550587 TIE1P35590 1138 aa10.95□□□□□ -0.66
DEPDC4-209ENST00000550587 CFTRP13569 1480 aa10.94□□□□□ -0.66
DEPDC4-209ENST00000550587 POTEJP0CG39 1038 aa10.94□□□□□ -0.66
DEPDC4-209ENST00000550587 RSF1Q96T23 1441 aaPredicted RBP10.92□□□□□ -0.66
DEPDC4-209ENST00000550587 TTLL13PA6NNM8 815 aa10.92□□□□□ -0.66
DEPDC4-209ENST00000550587 TOP2AP11388 1531 aaKnown RBP10.91□□□□□ -0.66
DEPDC4-209ENST00000550587 VASPP50552 380 aaPredicted RBP10.91□□□□□ -0.66
DEPDC4-209ENST00000550587 DCAF8Q5TAQ9 597 aa10.91□□□□□ -0.66
DEPDC4-209ENST00000550587 IFNL1Q8IU54 200 aa10.91□□□□□ -0.66
DEPDC4-209ENST00000550587 SGIP1Q9BQI5 828 aa10.91□□□□□ -0.66
DEPDC4-209ENST00000550587 POTEFA5A3E0 1075 aa10.9□□□□□ -0.66
DEPDC4-209ENST00000550587 KLHL34Q8N239 644 aa10.88□□□□□ -0.67
DEPDC4-209ENST00000550587 PYGBP11216 843 aa10.87□□□□□ -0.67
DEPDC4-209ENST00000550587 SUPT5HO00267 1087 aaKnown RBP10.86□□□□□ -0.67
DEPDC4-209ENST00000550587 TRIM35Q9UPQ4 493 aa10.85□□□□□ -0.67
DEPDC4-209ENST00000550587 URB2Q14146 1524 aaKnown RBP10.84□□□□□ -0.67
DEPDC4-209ENST00000550587 COLQQ9Y215 455 aaPredicted RBP10.83□□□□□ -0.68
DEPDC4-209ENST00000550587 TMEM106CQ9BVX2 250 aa10.82□□□□□ -0.68
DEPDC4-209ENST00000550587 PRDM2Q13029 1718 aa10.81□□□□□ -0.68
DEPDC4-209ENST00000550587 POTEMA6NI47 508 aa10.81□□□□□ -0.68
DEPDC4-209ENST00000550587 SEC24BO95487 1268 aa10.8□□□□□ -0.68
DEPDC4-209ENST00000550587 ABCC8Q09428 1581 aa10.8□□□□□ -0.68
DEPDC4-209ENST00000550587 IFT140Q96RY7 1462 aa10.8□□□□□ -0.68
DEPDC4-209ENST00000550587 MAMSTRQ6ZN01 415 aa10.79□□□□□ -0.68
DEPDC4-209ENST00000550587 PCDHB8Q9UN66 801 aa10.79□□□□□ -0.68
DEPDC4-209ENST00000550587 CCDC88BA6NC98 1476 aa10.79□□□□□ -0.68
DEPDC4-209ENST00000550587 SCUBE2Q9NQ36 999 aa10.77□□□□□ -0.69
DEPDC4-209ENST00000550587 IER5LQ5T953 404 aa10.76□□□□□ -0.69
DEPDC4-209ENST00000550587 POTEGQ6S5H5 508 aa10.76□□□□□ -0.69
DEPDC4-209ENST00000550587 GSE1Q14687 1217 aa10.75□□□□□ -0.69
DEPDC4-209ENST00000550587 TOPBP1Q92547 1522 aa10.74□□□□□ -0.69
DEPDC4-209ENST00000550587 IFNLR1Q8IU57 520 aaPredicted RBP10.74□□□□□ -0.69
DEPDC4-209ENST00000550587 PCDH10Q9P2E7 1040 aa10.74□□□□□ -0.69
DEPDC4-209ENST00000550587 ZNF608Q9ULD9 1512 aaPredicted RBP10.72□□□□□ -0.69
DEPDC4-209ENST00000550587 RIMBP3CA6NJZ7 1639 aa10.7□□□□□ -0.7
DEPDC4-209ENST00000550587 RIMBP3BA6NNM3 1639 aa10.7□□□□□ -0.7
DEPDC4-209ENST00000550587 RIMBP3Q9UFD9 1639 aa10.7□□□□□ -0.7
DEPDC4-209ENST00000550587 DNMBPQ6XZF7 1577 aa10.7□□□□□ -0.7
DEPDC4-209ENST00000550587 CYB5RLQ6IPT4 315 aa10.69□□□□□ -0.7
DEPDC4-209ENST00000550587 IRX5P78411 483 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms