RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 CECR2Q9BXF3 1484 aa15.17■□□□□ 0.02
VPS29-203ENST00000546588 CLCN6P51797 869 aa15.17■□□□□ 0.02
VPS29-203ENST00000546588 POTEIP0CG38 1075 aa15.16■□□□□ 0.02
VPS29-203ENST00000546588 RSF1Q96T23 1441 aaPredicted RBP15.15■□□□□ 0.02
VPS29-203ENST00000546588 MROH2BQ7Z745 1585 aa15.14■□□□□ 0.01
VPS29-203ENST00000546588 LHX8Q68G74 356 aa15.11■□□□□ 0.01
VPS29-203ENST00000546588 ZNF579Q8NAF0 562 aaKnown RBP15.09■□□□□ 0.01
VPS29-203ENST00000546588 SLC24A1O60721 1099 aa15.07■□□□□ 0
VPS29-203ENST00000546588 WIZO95785 1651 aa15.05■□□□□ -0
VPS29-203ENST00000546588 EIF4G1Q04637 1599 aaKnown RBP15.04■□□□□ -0
VPS29-203ENST00000546588 ZRANB1Q9UGI0 708 aa15.02■□□□□ -0
VPS29-203ENST00000546588 MNX1P50219 401 aaPredicted RBP14.99□□□□□ -0.01
VPS29-203ENST00000546588 SMARCA2P51531 1590 aa14.98□□□□□ -0.01
VPS29-203ENST00000546588 TOP2AP11388 1531 aaKnown RBP14.96□□□□□ -0.02
VPS29-203ENST00000546588 PROM2Q8N271 834 aa14.95□□□□□ -0.02
VPS29-203ENST00000546588 HMGXB3Q12766 1538 aa14.92□□□□□ -0.02
VPS29-203ENST00000546588 DCBLD2Q96PD2 775 aa14.9□□□□□ -0.02
VPS29-203ENST00000546588 ATAD2BQ9ULI0 1458 aa14.89□□□□□ -0.03
VPS29-203ENST00000546588 GALR2O43603 387 aaPredicted RBP14.89□□□□□ -0.03
VPS29-203ENST00000546588 NCAPD3P42695 1498 aa14.85□□□□□ -0.03
VPS29-203ENST00000546588 NPM1P06748 294 aaKnown RBP eCLIP14.85□□□□□ -0.03
VPS29-203ENST00000546588 SUPT5HO00267 1087 aaKnown RBP14.83□□□□□ -0.04
VPS29-203ENST00000546588 PAK3O75914 559 aaPredicted RBP14.82□□□□□ -0.04
VPS29-203ENST00000546588 CC2D2AQ9P2K1 1620 aa14.81□□□□□ -0.04
VPS29-203ENST00000546588 PHF12Q96QT6 1004 aa14.81□□□□□ -0.04
VPS29-203ENST00000546588 BAZ1BQ9UIG0 1483 aaKnown RBP14.77□□□□□ -0.04
VPS29-203ENST00000546588 PRDM2Q13029 1718 aa14.66□□□□□ -0.06
VPS29-203ENST00000546588 CCDC88BA6NC98 1476 aa14.66□□□□□ -0.06
VPS29-203ENST00000546588 POTEB2H3BUK9 544 aa14.65□□□□□ -0.06
VPS29-203ENST00000546588 PELP1Q8IZL8 1130 aaKnown RBP14.65□□□□□ -0.06
VPS29-203ENST00000546588 MS4A3Q96HJ5 214 aa14.64□□□□□ -0.07
VPS29-203ENST00000546588 ASTLQ6HA08 431 aaPredicted RBP14.61□□□□□ -0.07
VPS29-203ENST00000546588 PLSCR2Q9NRY7 297 aa14.61□□□□□ -0.07
VPS29-203ENST00000546588 CCDC61Q9Y6R9 512 aa14.61□□□□□ -0.07
VPS29-203ENST00000546588 OTUD5Q96G74 571 aa14.6□□□□□ -0.07
VPS29-203ENST00000546588 ATMINO43313 823 aaPredicted RBP14.56□□□□□ -0.08
VPS29-203ENST00000546588 TSPYL2Q9H2G4 693 aaPredicted RBP14.55□□□□□ -0.08
VPS29-203ENST00000546588 KIF12Q96FN5 646 aa14.52□□□□□ -0.09
VPS29-203ENST00000546588 METRNQ9UJH8 293 aa14.48□□□□□ -0.09
VPS29-203ENST00000546588 CFTRP13569 1480 aa14.48□□□□□ -0.09
VPS29-203ENST00000546588 C7P10643 843 aa14.47□□□□□ -0.09
VPS29-203ENST00000546588 MIER1Q8N108 512 aa14.47□□□□□ -0.09
VPS29-203ENST00000546588 SLC39A7Q92504 469 aa14.47□□□□□ -0.09
VPS29-203ENST00000546588 RASEFQ8IZ41 740 aa14.46□□□□□ -0.09
VPS29-203ENST00000546588 POTEJP0CG39 1038 aa14.44□□□□□ -0.1
VPS29-203ENST00000546588 LAMC3Q9Y6N6 1575 aa14.43□□□□□ -0.1
VPS29-203ENST00000546588 PLEKHG5O94827 1062 aa14.43□□□□□ -0.1
VPS29-203ENST00000546588 ATN1P54259 1190 aaPredicted RBP14.42□□□□□ -0.1
VPS29-203ENST00000546588 FBXO3Q9UK99 471 aa14.42□□□□□ -0.1
VPS29-203ENST00000546588 MAP3K13O43283 966 aa14.39□□□□□ -0.11
VPS29-203ENST00000546588 TRPC6Q9Y210 931 aa14.39□□□□□ -0.11
VPS29-203ENST00000546588 BMP2KQ9NSY1 1161 aaPredicted RBP14.38□□□□□ -0.11
VPS29-203ENST00000546588 CADPSQ9ULU8 1353 aa14.35□□□□□ -0.11
VPS29-203ENST00000546588 BIVM-ERCC5R4GMW8 1640 aa14.35□□□□□ -0.11
VPS29-203ENST00000546588 TIE1P35590 1138 aa14.34□□□□□ -0.11
VPS29-203ENST00000546588 POTEFA5A3E0 1075 aa14.33□□□□□ -0.12
VPS29-203ENST00000546588 NUBP1P53384 320 aa14.32□□□□□ -0.12
VPS29-203ENST00000546588 PLCD3Q8N3E9 789 aa14.32□□□□□ -0.12
VPS29-203ENST00000546588 TOP2BQ02880 1626 aa14.3□□□□□ -0.12
VPS29-203ENST00000546588 ABCC8Q09428 1581 aa14.3□□□□□ -0.12
VPS29-203ENST00000546588 SGIP1Q9BQI5 828 aa14.29□□□□□ -0.12
VPS29-203ENST00000546588 SYNJ1O43426 1573 aa14.27□□□□□ -0.12
VPS29-203ENST00000546588 MAMSTRQ6ZN01 415 aa14.27□□□□□ -0.13
VPS29-203ENST00000546588 ZBTB47Q9UFB7 747 aaPredicted RBP14.27□□□□□ -0.13
VPS29-203ENST00000546588 TTLL13PA6NNM8 815 aa14.25□□□□□ -0.13
VPS29-203ENST00000546588 WRNQ14191 1432 aaPredicted RBP eCLIP14.24□□□□□ -0.13
VPS29-203ENST00000546588 KIF21AQ7Z4S6 1674 aa14.23□□□□□ -0.13
VPS29-203ENST00000546588 POTEMA6NI47 508 aa14.22□□□□□ -0.13
VPS29-203ENST00000546588 VASPP50552 380 aaPredicted RBP14.21□□□□□ -0.13
VPS29-203ENST00000546588 NESP48681 1621 aa14.2□□□□□ -0.14
VPS29-203ENST00000546588 CUX1P39880 1505 aa14.2□□□□□ -0.14
VPS29-203ENST00000546588 FANCD2Q9BXW9 1451 aa14.19□□□□□ -0.14
VPS29-203ENST00000546588 PCDHB13Q9Y5F0 798 aa14.19□□□□□ -0.14
VPS29-203ENST00000546588 POTEGQ6S5H5 508 aa14.18□□□□□ -0.14
VPS29-203ENST00000546588 DNMBPQ6XZF7 1577 aa14.17□□□□□ -0.14
VPS29-203ENST00000546588 COLQQ9Y215 455 aaPredicted RBP14.17□□□□□ -0.14
VPS29-203ENST00000546588 LCE2DQ5TA82 110 aaPredicted RBP14.16□□□□□ -0.14
VPS29-203ENST00000546588 SCUBE2Q9NQ36 999 aa14.16□□□□□ -0.14
VPS29-203ENST00000546588 PDS5BQ9NTI5 1447 aa14.15□□□□□ -0.14
VPS29-203ENST00000546588 IFNL1Q8IU54 200 aa14.15□□□□□ -0.14
VPS29-203ENST00000546588 CEP164Q9UPV0 1460 aa14.14□□□□□ -0.15
VPS29-203ENST00000546588 IER5LQ5T953 404 aa14.14□□□□□ -0.15
VPS29-203ENST00000546588 FAM212AQ96EL1 285 aa14.13□□□□□ -0.15
VPS29-203ENST00000546588 TRIM35Q9UPQ4 493 aa14.13□□□□□ -0.15
VPS29-203ENST00000546588 WDR97A6NE52 1622 aa14.12□□□□□ -0.15
VPS29-203ENST00000546588 THOC2Q8NI27 1593 aaKnown RBP14.08□□□□□ -0.16
VPS29-203ENST00000546588 EEA1Q15075 1411 aa14.07□□□□□ -0.16
VPS29-203ENST00000546588 TOPBP1Q92547 1522 aa14.07□□□□□ -0.16
VPS29-203ENST00000546588 IFNLR1Q8IU57 520 aaPredicted RBP14.07□□□□□ -0.16
VPS29-203ENST00000546588 TRIM41Q8WV44 630 aa14.07□□□□□ -0.16
VPS29-203ENST00000546588 WDR62O43379 1518 aa14.06□□□□□ -0.16
VPS29-203ENST00000546588 URB2Q14146 1524 aaKnown RBP14.06□□□□□ -0.16
VPS29-203ENST00000546588 SEC24BO95487 1268 aa14.06□□□□□ -0.16
VPS29-203ENST00000546588 PCDH10Q9P2E7 1040 aa14.05□□□□□ -0.16
VPS29-203ENST00000546588 PLCB2Q00722 1185 aa14.04□□□□□ -0.16
VPS29-203ENST00000546588 MRC2Q9UBG0 1479 aa14.03□□□□□ -0.16
VPS29-203ENST00000546588 TMEM106CQ9BVX2 250 aa14.02□□□□□ -0.17
VPS29-203ENST00000546588 FGD5Q6ZNL6 1462 aa14.01□□□□□ -0.17
VPS29-203ENST00000546588 FAM163AQ96GL9 167 aaPredicted RBP13.99□□□□□ -0.17
VPS29-203ENST00000546588 TARBP1Q13395 1621 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms