RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 TOP2BQ02880 1626 aa23.07■■□□□ 1.28
SCAF11-208ENST00000546534 PRG4Q92954 1404 aaPredicted RBP23.07■■□□□ 1.28
SCAF11-208ENST00000546534 BIVM-ERCC5R4GMW8 1640 aa23.05■■□□□ 1.28
SCAF11-208ENST00000546534 ERICH3Q5RHP9 1530 aa23.05■■□□□ 1.28
SCAF11-208ENST00000546534 ADRA2BP18089 450 aa23.05■■□□□ 1.28
SCAF11-208ENST00000546534 KIF13AQ9H1H9 1805 aa23.04■■□□□ 1.28
SCAF11-208ENST00000546534 JPH4Q96JJ6 628 aa23.03■■□□□ 1.28
SCAF11-208ENST00000546534 FAM69CQ0P6D2 419 aa22.96■■□□□ 1.27
SCAF11-208ENST00000546534 ABCC10Q5T3U5 1492 aa22.93■■□□□ 1.26
SCAF11-208ENST00000546534 NPM1P06748 294 aaKnown RBP eCLIP22.91■■□□□ 1.26
SCAF11-208ENST00000546534 RUSC2Q8N2Y8 1516 aa22.88■■□□□ 1.25
SCAF11-208ENST00000546534 MAPKBP1O60336 1514 aa22.87■■□□□ 1.25
SCAF11-208ENST00000546534 POTEDQ86YR6 584 aa22.85■■□□□ 1.25
SCAF11-208ENST00000546534 DIP2BQ9P265 1576 aa22.84■■□□□ 1.25
SCAF11-208ENST00000546534 ADCY10Q96PN6 1610 aa22.82■■□□□ 1.24
SCAF11-208ENST00000546534 KDM4FA0A1W2PPD8 638 aa22.78■■□□□ 1.24
SCAF11-208ENST00000546534 KIAA0586Q9BVV6 1533 aa22.76■■□□□ 1.23
SCAF11-208ENST00000546534 KDM6BO15054 1643 aa22.75■■□□□ 1.23
SCAF11-208ENST00000546534 IGF1RP08069 1367 aa22.71■■□□□ 1.23
SCAF11-208ENST00000546534 TSPOAP1O95153 1857 aa22.67■■□□□ 1.22
SCAF11-208ENST00000546534 PTPRGP23470 1445 aa22.65■■□□□ 1.22
SCAF11-208ENST00000546534 TTBK1Q5TCY1 1321 aaPredicted RBP22.62■■□□□ 1.21
SCAF11-208ENST00000546534 KIF27Q86VH2 1401 aa22.62■■□□□ 1.21
SCAF11-208ENST00000546534 CUL7Q14999 1698 aa22.61■■□□□ 1.21
SCAF11-208ENST00000546534 PIAS4Q8N2W9 510 aaPredicted RBP22.6■■□□□ 1.21
SCAF11-208ENST00000546534 ABCC2Q92887 1545 aa22.57■■□□□ 1.2
SCAF11-208ENST00000546534 TNIKQ9UKE5 1360 aa22.56■■□□□ 1.2
SCAF11-208ENST00000546534 ASXL2Q76L83 1435 aa22.55■■□□□ 1.2
SCAF11-208ENST00000546534 CARMIL2Q6F5E8 1435 aa22.54■■□□□ 1.2
SCAF11-208ENST00000546534 CARMIL1Q5VZK9 1371 aa22.53■■□□□ 1.2
SCAF11-208ENST00000546534 ILDR1Q86SU0 546 aaPredicted RBP22.53■■□□□ 1.2
SCAF11-208ENST00000546534 PLB1Q6P1J6 1458 aa22.53■■□□□ 1.2
SCAF11-208ENST00000546534 MSH5O43196 834 aa22.51■■□□□ 1.19
SCAF11-208ENST00000546534 GLI2P10070 1586 aa22.5■■□□□ 1.19
SCAF11-208ENST00000546534 PPRC1Q5VV67 1664 aaKnown RBP22.49■■□□□ 1.19
SCAF11-208ENST00000546534 UHRF1BP1LA0JNW5 1464 aa22.47■■□□□ 1.19
SCAF11-208ENST00000546534 ADGRL1O94910 1474 aa22.46■■□□□ 1.19
SCAF11-208ENST00000546534 UACAQ9BZF9 1416 aa22.45■■□□□ 1.18
SCAF11-208ENST00000546534 IQGAP2Q13576 1575 aa22.45■■□□□ 1.18
SCAF11-208ENST00000546534 COL17A1Q9UMD9 1497 aaPredicted RBP22.44■■□□□ 1.18
SCAF11-208ENST00000546534 DISP1Q96F81 1524 aa22.41■■□□□ 1.18
SCAF11-208ENST00000546534 EPRSP07814 1512 aaKnown RBP22.4■■□□□ 1.18
SCAF11-208ENST00000546534 KDM5BQ9UGL1 1544 aa22.37■■□□□ 1.17
SCAF11-208ENST00000546534 MAP3K4Q9Y6R4 1608 aa22.35■■□□□ 1.17
SCAF11-208ENST00000546534 TEX14Q8IWB6 1497 aa22.33■■□□□ 1.16
SCAF11-208ENST00000546534 ZCCHC11Q5TAX3 1644 aaKnown RBP22.3■■□□□ 1.16
SCAF11-208ENST00000546534 UGGT2Q9NYU1 1516 aa22.3■■□□□ 1.16
SCAF11-208ENST00000546534 HECW2Q9P2P5 1572 aa22.28■■□□□ 1.16
SCAF11-208ENST00000546534 RAPGEF2Q9Y4G8 1499 aa22.26■■□□□ 1.15
SCAF11-208ENST00000546534 KIAA0556O60303 1618 aa22.25■■□□□ 1.15
SCAF11-208ENST00000546534 WDR7Q9Y4E6 1490 aa22.23■■□□□ 1.15
SCAF11-208ENST00000546534 CD109Q6YHK3 1445 aa22.16■■□□□ 1.14
SCAF11-208ENST00000546534 KCNH8Q96L42 1107 aa22.15■■□□□ 1.14
SCAF11-208ENST00000546534 MAGI3Q5TCQ9 1506 aa22.15■■□□□ 1.14
SCAF11-208ENST00000546534 CFAP43Q8NDM7 1665 aa22.1■■□□□ 1.13
SCAF11-208ENST00000546534 ABCA8O94911 1581 aa22.09■■□□□ 1.13
SCAF11-208ENST00000546534 GOLGA3Q08378 1498 aa22.08■■□□□ 1.12
SCAF11-208ENST00000546534 CTTNBP2Q8WZ74 1663 aa22.04■■□□□ 1.12
SCAF11-208ENST00000546534 KIF21BO75037 1637 aa22.02■■□□□ 1.11
SCAF11-208ENST00000546534 ARAP3Q8WWN8 1544 aa21.99■■□□□ 1.11
SCAF11-208ENST00000546534 ARID3CA6NKF2 412 aa21.97■■□□□ 1.11
SCAF11-208ENST00000546534 FBXO41Q8TF61 875 aa21.95■■□□□ 1.1
SCAF11-208ENST00000546534 ATP10BO94823 1461 aa21.93■■□□□ 1.1
SCAF11-208ENST00000546534 PRXQ9BXM0 1461 aa21.93■■□□□ 1.1
SCAF11-208ENST00000546534 P3H3Q8IVL6 736 aa21.91■■□□□ 1.1
SCAF11-208ENST00000546534 PTPRMP28827 1452 aa21.9■■□□□ 1.1
SCAF11-208ENST00000546534 PHLDB1Q86UU1 1377 aa21.89■■□□□ 1.1
SCAF11-208ENST00000546534 RAPGEF3O95398 923 aa21.89■■□□□ 1.09
SCAF11-208ENST00000546534 FAM9AQ8IZU1 332 aaPredicted RBP21.89■■□□□ 1.09
SCAF11-208ENST00000546534 ADAMTSL3P82987 1691 aa21.88■■□□□ 1.09
SCAF11-208ENST00000546534 ABCA9Q8IUA7 1624 aa21.87■■□□□ 1.09
SCAF11-208ENST00000546534 NEO1Q92859 1461 aa21.82■■□□□ 1.08
SCAF11-208ENST00000546534 ARID4BQ4LE39 1312 aaPredicted RBP21.8■■□□□ 1.08
SCAF11-208ENST00000546534 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.78■■□□□ 1.08
SCAF11-208ENST00000546534 HNRNPUL2Q1KMD3 747 aaKnown RBP21.78■■□□□ 1.08
SCAF11-208ENST00000546534 FRMPD1Q5SYB0 1578 aa21.78■■□□□ 1.08
SCAF11-208ENST00000546534 BCORL1Q5H9F3 1711 aa21.77■■□□□ 1.08
SCAF11-208ENST00000546534 PCF11O94913 1555 aaKnown RBP21.76■■□□□ 1.07
SCAF11-208ENST00000546534 MADDQ8WXG6 1647 aa21.76■■□□□ 1.07
SCAF11-208ENST00000546534 RAPGEF6Q8TEU7 1601 aa21.75■■□□□ 1.07
SCAF11-208ENST00000546534 LMTK3Q96Q04 1460 aa21.75■■□□□ 1.07
SCAF11-208ENST00000546534 SAMD9Q5K651 1589 aa21.74■■□□□ 1.07
SCAF11-208ENST00000546534 NUP153P49790 1475 aaKnown RBP21.71■■□□□ 1.07
SCAF11-208ENST00000546534 DENND4BO75064 1496 aaPredicted RBP21.68■■□□□ 1.06
SCAF11-208ENST00000546534 ARHGEF40Q8TER5 1519 aa21.67■■□□□ 1.06
SCAF11-208ENST00000546534 CSRNP3Q8WYN3 585 aa21.67■■□□□ 1.06
SCAF11-208ENST00000546534 HSPA2P54652 639 aa21.66■■□□□ 1.06
SCAF11-208ENST00000546534 RIMS1Q86UR5 1692 aaKnown RBP21.66■■□□□ 1.06
SCAF11-208ENST00000546534 PLEKHD1A6NEE1 506 aa21.65■■□□□ 1.06
SCAF11-208ENST00000546534 AKNAQ7Z591 1439 aa21.64■■□□□ 1.06
SCAF11-208ENST00000546534 RANGAP1P46060 587 aaPredicted RBP21.64■■□□□ 1.05
SCAF11-208ENST00000546534 FHOD3Q2V2M9 1422 aa21.63■■□□□ 1.05
SCAF11-208ENST00000546534 RICTORQ6R327 1708 aa21.63■■□□□ 1.05
SCAF11-208ENST00000546534 FANCAO15360 1455 aa21.62■■□□□ 1.05
SCAF11-208ENST00000546534 POGZQ7Z3K3 1410 aa21.59■■□□□ 1.05
SCAF11-208ENST00000546534 YEATS2Q9ULM3 1422 aa21.58■■□□□ 1.05
SCAF11-208ENST00000546534 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.58■■□□□ 1.04
SCAF11-208ENST00000546534 ZMYM4Q5VZL5 1548 aa21.56■■□□□ 1.04
SCAF11-208ENST00000546534 CFAP74Q9C0B2 1584 aa21.56■■□□□ 1.04
SCAF11-208ENST00000546534 ZFYVE16Q7Z3T8 1539 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms