RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 JPH4Q96JJ6 628 aa23.16■■□□□ 1.3
USP28-212ENST00000544750 ABCC10Q5T3U5 1492 aa23.11■■□□□ 1.29
USP28-212ENST00000544750 MAPKBP1O60336 1514 aa23.1■■□□□ 1.29
USP28-212ENST00000544750 DIP2BQ9P265 1576 aa23.07■■□□□ 1.28
USP28-212ENST00000544750 ADCY10Q96PN6 1610 aa23.07■■□□□ 1.28
USP28-212ENST00000544750 FAM69CQ0P6D2 419 aa23.02■■□□□ 1.28
USP28-212ENST00000544750 KIAA0586Q9BVV6 1533 aa22.98■■□□□ 1.27
USP28-212ENST00000544750 NPM1P06748 294 aaKnown RBP eCLIP22.96■■□□□ 1.27
USP28-212ENST00000544750 TSPOAP1O95153 1857 aa22.94■■□□□ 1.26
USP28-212ENST00000544750 CUL7Q14999 1698 aa22.93■■□□□ 1.26
USP28-212ENST00000544750 IGF1RP08069 1367 aa22.93■■□□□ 1.26
USP28-212ENST00000544750 KDM6BO15054 1643 aa22.92■■□□□ 1.26
USP28-212ENST00000544750 KIF27Q86VH2 1401 aa22.85■■□□□ 1.25
USP28-212ENST00000544750 KDM4FA0A1W2PPD8 638 aa22.85■■□□□ 1.25
USP28-212ENST00000544750 PPRC1Q5VV67 1664 aaKnown RBP22.79■■□□□ 1.24
USP28-212ENST00000544750 PTPRGP23470 1445 aa22.79■■□□□ 1.24
USP28-212ENST00000544750 ABCC2Q92887 1545 aa22.76■■□□□ 1.23
USP28-212ENST00000544750 GLI2P10070 1586 aa22.75■■□□□ 1.23
USP28-212ENST00000544750 CARMIL1Q5VZK9 1371 aa22.75■■□□□ 1.23
USP28-212ENST00000544750 TNIKQ9UKE5 1360 aa22.73■■□□□ 1.23
USP28-212ENST00000544750 IQGAP2Q13576 1575 aa22.72■■□□□ 1.23
USP28-212ENST00000544750 CARMIL2Q6F5E8 1435 aa22.7■■□□□ 1.22
USP28-212ENST00000544750 ASXL2Q76L83 1435 aa22.7■■□□□ 1.22
USP28-212ENST00000544750 UHRF1BP1LA0JNW5 1464 aa22.7■■□□□ 1.22
USP28-212ENST00000544750 PLB1Q6P1J6 1458 aa22.69■■□□□ 1.22
USP28-212ENST00000544750 DISP1Q96F81 1524 aa22.66■■□□□ 1.22
USP28-212ENST00000544750 UACAQ9BZF9 1416 aa22.63■■□□□ 1.21
USP28-212ENST00000544750 TTBK1Q5TCY1 1321 aaPredicted RBP22.62■■□□□ 1.21
USP28-212ENST00000544750 MAP3K4Q9Y6R4 1608 aa22.62■■□□□ 1.21
USP28-212ENST00000544750 KDM5BQ9UGL1 1544 aa22.62■■□□□ 1.21
USP28-212ENST00000544750 COL17A1Q9UMD9 1497 aaPredicted RBP22.6■■□□□ 1.21
USP28-212ENST00000544750 EPRSP07814 1512 aaKnown RBP22.59■■□□□ 1.21
USP28-212ENST00000544750 UGGT2Q9NYU1 1516 aa22.58■■□□□ 1.21
USP28-212ENST00000544750 ZCCHC11Q5TAX3 1644 aaKnown RBP22.57■■□□□ 1.2
USP28-212ENST00000544750 ADGRL1O94910 1474 aa22.57■■□□□ 1.2
USP28-212ENST00000544750 KIAA0556O60303 1618 aa22.53■■□□□ 1.2
USP28-212ENST00000544750 RAPGEF2Q9Y4G8 1499 aa22.51■■□□□ 1.19
USP28-212ENST00000544750 TEX14Q8IWB6 1497 aa22.49■■□□□ 1.19
USP28-212ENST00000544750 ILDR1Q86SU0 546 aaPredicted RBP22.47■■□□□ 1.19
USP28-212ENST00000544750 CTTNBP2Q8WZ74 1663 aa22.42■■□□□ 1.18
USP28-212ENST00000544750 WDR7Q9Y4E6 1490 aa22.42■■□□□ 1.18
USP28-212ENST00000544750 HECW2Q9P2P5 1572 aa22.4■■□□□ 1.18
USP28-212ENST00000544750 CFAP43Q8NDM7 1665 aa22.39■■□□□ 1.18
USP28-212ENST00000544750 ABCA8O94911 1581 aa22.36■■□□□ 1.17
USP28-212ENST00000544750 MAGI3Q5TCQ9 1506 aa22.36■■□□□ 1.17
USP28-212ENST00000544750 CD109Q6YHK3 1445 aa22.31■■□□□ 1.16
USP28-212ENST00000544750 GOLGA3Q08378 1498 aa22.29■■□□□ 1.16
USP28-212ENST00000544750 KIF21BO75037 1637 aa22.24■■□□□ 1.15
USP28-212ENST00000544750 PRXQ9BXM0 1461 aa22.22■■□□□ 1.15
USP28-212ENST00000544750 KCNH8Q96L42 1107 aa22.22■■□□□ 1.15
USP28-212ENST00000544750 ARAP3Q8WWN8 1544 aa22.21■■□□□ 1.15
USP28-212ENST00000544750 ABCA9Q8IUA7 1624 aa22.15■■□□□ 1.14
USP28-212ENST00000544750 ATP10BO94823 1461 aa22.15■■□□□ 1.14
USP28-212ENST00000544750 ADAMTSL3P82987 1691 aa22.12■■□□□ 1.13
USP28-212ENST00000544750 SAMD9Q5K651 1589 aa22.08■■□□□ 1.12
USP28-212ENST00000544750 PHLDB1Q86UU1 1377 aa22.07■■□□□ 1.12
USP28-212ENST00000544750 PTPRMP28827 1452 aa22.03■■□□□ 1.12
USP28-212ENST00000544750 RAPGEF6Q8TEU7 1601 aa22.03■■□□□ 1.12
USP28-212ENST00000544750 FRMPD1Q5SYB0 1578 aa22.03■■□□□ 1.12
USP28-212ENST00000544750 BCORL1Q5H9F3 1711 aa22.03■■□□□ 1.12
USP28-212ENST00000544750 NEO1Q92859 1461 aa22.03■■□□□ 1.12
USP28-212ENST00000544750 ARID3CA6NKF2 412 aa22.02■■□□□ 1.12
USP28-212ENST00000544750 P3H3Q8IVL6 736 aa22.01■■□□□ 1.11
USP28-212ENST00000544750 RAPGEF3O95398 923 aa21.98■■□□□ 1.11
USP28-212ENST00000544750 MADDQ8WXG6 1647 aa21.97■■□□□ 1.11
USP28-212ENST00000544750 FAM9AQ8IZU1 332 aaPredicted RBP21.95■■□□□ 1.1
USP28-212ENST00000544750 FBXO41Q8TF61 875 aa21.95■■□□□ 1.1
USP28-212ENST00000544750 NUP153P49790 1475 aaKnown RBP21.95■■□□□ 1.1
USP28-212ENST00000544750 RICTORQ6R327 1708 aa21.93■■□□□ 1.1
USP28-212ENST00000544750 PCF11O94913 1555 aaKnown RBP21.91■■□□□ 1.1
USP28-212ENST00000544750 ARHGEF40Q8TER5 1519 aa21.9■■□□□ 1.1
USP28-212ENST00000544750 LMTK3Q96Q04 1460 aa21.89■■□□□ 1.09
USP28-212ENST00000544750 CSRNP3Q8WYN3 585 aa21.88■■□□□ 1.09
USP28-212ENST00000544750 RIMS1Q86UR5 1692 aaKnown RBP21.87■■□□□ 1.09
USP28-212ENST00000544750 SIGLEC1Q9BZZ2 1709 aa21.84■■□□□ 1.09
USP28-212ENST00000544750 DENND4BO75064 1496 aaPredicted RBP21.83■■□□□ 1.09
USP28-212ENST00000544750 FHOD3Q2V2M9 1422 aa21.83■■□□□ 1.09
USP28-212ENST00000544750 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.83■■□□□ 1.09
USP28-212ENST00000544750 HNRNPUL2Q1KMD3 747 aaKnown RBP21.83■■□□□ 1.09
USP28-212ENST00000544750 CFAP74Q9C0B2 1584 aa21.82■■□□□ 1.08
USP28-212ENST00000544750 AKNAQ7Z591 1439 aa21.82■■□□□ 1.08
USP28-212ENST00000544750 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.82■■□□□ 1.08
USP28-212ENST00000544750 ZMYM4Q5VZL5 1548 aa21.81■■□□□ 1.08
USP28-212ENST00000544750 ARID4BQ4LE39 1312 aaPredicted RBP21.8■■□□□ 1.08
USP28-212ENST00000544750 TTC37Q6PGP7 1564 aa21.79■■□□□ 1.08
USP28-212ENST00000544750 FANCAO15360 1455 aa21.79■■□□□ 1.08
USP28-212ENST00000544750 PLEKHD1A6NEE1 506 aa21.77■■□□□ 1.08
USP28-212ENST00000544750 EEA1Q15075 1411 aa21.74■■□□□ 1.07
USP28-212ENST00000544750 EFCAB5A4FU69 1503 aa21.74■■□□□ 1.07
USP28-212ENST00000544750 YEATS2Q9ULM3 1422 aa21.73■■□□□ 1.07
USP28-212ENST00000544750 ZFYVE16Q7Z3T8 1539 aa21.73■■□□□ 1.07
USP28-212ENST00000544750 HECW1Q76N89 1606 aa21.72■■□□□ 1.07
USP28-212ENST00000544750 FER1L4A9Z1Z3 1794 aa21.71■■□□□ 1.07
USP28-212ENST00000544750 MAGI2Q86UL8 1455 aa21.71■■□□□ 1.07
USP28-212ENST00000544750 POGZQ7Z3K3 1410 aa21.71■■□□□ 1.07
USP28-212ENST00000544750 RANGAP1P46060 587 aaPredicted RBP21.69■■□□□ 1.06
USP28-212ENST00000544750 HSPA2P54652 639 aa21.68■■□□□ 1.06
USP28-212ENST00000544750 CDK13Q14004 1512 aaKnown RBP21.68■■□□□ 1.06
USP28-212ENST00000544750 PLCH2O75038 1416 aa21.65■■□□□ 1.06
USP28-212ENST00000544750 ARHGEF12Q9NZN5 1544 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms