RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 NOP58Q9Y2X3 529 aaKnown RBP19.39■□□□□ 0.69
LIMS1-215ENST00000544547 SIN3AQ96ST3 1273 aa19.39■□□□□ 0.69
LIMS1-215ENST00000544547 TONSLQ96HA7 1378 aa19.38■□□□□ 0.69
LIMS1-215ENST00000544547 MRS2Q9HD23 443 aa19.35■□□□□ 0.69
LIMS1-215ENST00000544547 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.35■□□□□ 0.69
LIMS1-215ENST00000544547 SALL2Q9Y467 1007 aaPredicted RBP19.35■□□□□ 0.69
LIMS1-215ENST00000544547 LAS1LQ9Y4W2 734 aaKnown RBP19.33■□□□□ 0.68
LIMS1-215ENST00000544547 VPS8Q8N3P4 1428 aa19.32■□□□□ 0.68
LIMS1-215ENST00000544547 PPP4R2Q9NY27 417 aa19.3■□□□□ 0.68
LIMS1-215ENST00000544547 ARXQ96QS3 562 aa19.27■□□□□ 0.68
LIMS1-215ENST00000544547 BAZ1BQ9UIG0 1483 aaKnown RBP19.27■□□□□ 0.68
LIMS1-215ENST00000544547 CHIC2Q9UKJ5 165 aa19.26■□□□□ 0.67
LIMS1-215ENST00000544547 TOP2AP11388 1531 aaKnown RBP19.26■□□□□ 0.67
LIMS1-215ENST00000544547 FBLN2P98095 1184 aa19.25■□□□□ 0.67
LIMS1-215ENST00000544547 NEFMP07197 916 aa19.23■□□□□ 0.67
LIMS1-215ENST00000544547 PRKCSHP14314 528 aaPredicted RBP19.21■□□□□ 0.67
LIMS1-215ENST00000544547 RAPGEF2Q9Y4G8 1499 aa19.2■□□□□ 0.66
LIMS1-215ENST00000544547 CCNB3Q8WWL7 1395 aa19.19■□□□□ 0.66
LIMS1-215ENST00000544547 ANO8Q9HCE9 1232 aaPredicted RBP19.15■□□□□ 0.66
LIMS1-215ENST00000544547 KIF27Q86VH2 1401 aa19.15■□□□□ 0.66
LIMS1-215ENST00000544547 CCER2I3L3R5 266 aa19.12■□□□□ 0.65
LIMS1-215ENST00000544547 GLIPR1L2Q4G1C9 344 aa19.11■□□□□ 0.65
LIMS1-215ENST00000544547 RRP7BPQ9NSQ0 103 aa19.1■□□□□ 0.65
LIMS1-215ENST00000544547 DHX57Q6P158 1386 aaKnown RBP19.1■□□□□ 0.65
LIMS1-215ENST00000544547 TMC1Q8TDI8 760 aa19.09■□□□□ 0.65
LIMS1-215ENST00000544547 SMARCA4P51532 1647 aa19.08■□□□□ 0.65
LIMS1-215ENST00000544547 SMARCA2P51531 1590 aa19.08■□□□□ 0.64
LIMS1-215ENST00000544547 MTUS2Q5JR59 1369 aa19.07■□□□□ 0.64
LIMS1-215ENST00000544547 FANCIQ9NVI1 1328 aa19.06■□□□□ 0.64
LIMS1-215ENST00000544547 RAB3GAP2Q9H2M9 1393 aa19.05■□□□□ 0.64
LIMS1-215ENST00000544547 EIF4G2P78344 907 aaKnown RBP eCLIP19.04■□□□□ 0.64
LIMS1-215ENST00000544547 MSH5O43196 834 aa19.04■□□□□ 0.64
LIMS1-215ENST00000544547 ZNF777Q9ULD5 760 aaPredicted RBP19.03■□□□□ 0.64
LIMS1-215ENST00000544547 PPM1GO15355 546 aaPredicted RBP19■□□□□ 0.63
LIMS1-215ENST00000544547 IPO9Q96P70 1041 aaKnown RBP18.96■□□□□ 0.63
LIMS1-215ENST00000544547 CUX2O14529 1486 aa18.95■□□□□ 0.62
LIMS1-215ENST00000544547 SETD5Q9C0A6 1442 aa18.94■□□□□ 0.62
LIMS1-215ENST00000544547 CARMIL1Q5VZK9 1371 aa18.94■□□□□ 0.62
LIMS1-215ENST00000544547 CANXP27824 592 aaKnown RBP18.91■□□□□ 0.62
LIMS1-215ENST00000544547 ERICH6BQ5W0A0 696 aa18.9■□□□□ 0.62
LIMS1-215ENST00000544547 IL27Q8NEV9 243 aa18.9■□□□□ 0.62
LIMS1-215ENST00000544547 ATAD2BQ9ULI0 1458 aa18.89■□□□□ 0.62
LIMS1-215ENST00000544547 DDRGK1Q96HY6 314 aa18.89■□□□□ 0.61
LIMS1-215ENST00000544547 PAK3O75914 559 aaPredicted RBP18.87■□□□□ 0.61
LIMS1-215ENST00000544547 PPP1R15AO75807 674 aaPredicted RBP18.86■□□□□ 0.61
LIMS1-215ENST00000544547 KIF21BO75037 1637 aa18.85■□□□□ 0.61
LIMS1-215ENST00000544547 NAP1L5Q96NT1 182 aaPredicted RBP18.84■□□□□ 0.61
LIMS1-215ENST00000544547 HSPA5P11021 654 aaKnown RBP18.82■□□□□ 0.6
LIMS1-215ENST00000544547 SLC24A1O60721 1099 aa18.81■□□□□ 0.6
LIMS1-215ENST00000544547 KDM2AQ9Y2K7 1162 aa18.81■□□□□ 0.6
LIMS1-215ENST00000544547 FOXD1Q16676 465 aa18.81■□□□□ 0.6
LIMS1-215ENST00000544547 SYNJ1O43426 1573 aa18.8■□□□□ 0.6
LIMS1-215ENST00000544547 RGS3P49796 1198 aa18.79■□□□□ 0.6
LIMS1-215ENST00000544547 FHAD1B1AJZ9 1412 aa18.77■□□□□ 0.6
LIMS1-215ENST00000544547 TIMELESSQ9UNS1 1208 aa18.77■□□□□ 0.59
LIMS1-215ENST00000544547 ARID4BQ4LE39 1312 aaPredicted RBP18.76■□□□□ 0.59
LIMS1-215ENST00000544547 UPF2Q9HAU5 1272 aaKnown RBP18.75■□□□□ 0.59
LIMS1-215ENST00000544547 SLC4A3P48751 1232 aa18.74■□□□□ 0.59
LIMS1-215ENST00000544547 ARAP1Q96P48 1450 aa18.72■□□□□ 0.59
LIMS1-215ENST00000544547 FHOD3Q2V2M9 1422 aa18.72■□□□□ 0.59
LIMS1-215ENST00000544547 ARHGAP35Q9NRY4 1499 aa18.7■□□□□ 0.58
LIMS1-215ENST00000544547 HSP90AA1P07900 732 aaKnown RBP18.68■□□□□ 0.58
LIMS1-215ENST00000544547 CHGAP10645 457 aaKnown RBP18.67■□□□□ 0.58
LIMS1-215ENST00000544547 ANP32BQ92688 251 aaKnown RBP18.67■□□□□ 0.58
LIMS1-215ENST00000544547 BRPF3Q9ULD4 1205 aa18.64■□□□□ 0.58
LIMS1-215ENST00000544547 PHLDB1Q86UU1 1377 aa18.64■□□□□ 0.58
LIMS1-215ENST00000544547 TCERG1O14776 1098 aaKnown RBP18.64■□□□□ 0.57
LIMS1-215ENST00000544547 NUDCQ9Y266 331 aa18.64■□□□□ 0.57
LIMS1-215ENST00000544547 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-215ENST00000544547 GSE1Q14687 1217 aa18.63■□□□□ 0.57
LIMS1-215ENST00000544547 TRIM44Q96DX7 344 aaPredicted RBP18.63■□□□□ 0.57
LIMS1-215ENST00000544547 IGF1RP08069 1367 aa18.63■□□□□ 0.57
LIMS1-215ENST00000544547 PDE4AP27815 886 aa18.63■□□□□ 0.57
LIMS1-215ENST00000544547 BECN1Q14457 450 aa18.63■□□□□ 0.57
LIMS1-215ENST00000544547 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.63■□□□□ 0.579e-6■□□□□ 10.7
LIMS1-215ENST00000544547 TDRD9Q8NDG6 1382 aaKnown RBP18.6■□□□□ 0.57
LIMS1-215ENST00000544547 USP35Q9P2H5 1018 aa18.6■□□□□ 0.57
LIMS1-215ENST00000544547 L3MBTL2Q969R5 705 aa18.59■□□□□ 0.57
LIMS1-215ENST00000544547 VSIG10Q8N0Z9 540 aa18.59■□□□□ 0.57
LIMS1-215ENST00000544547 SPRYD3Q8NCJ5 442 aa18.58■□□□□ 0.57
LIMS1-215ENST00000544547 SLKQ9H2G2 1235 aaPredicted RBP18.58■□□□□ 0.57
LIMS1-215ENST00000544547 ESF1Q9H501 851 aaKnown RBP18.58■□□□□ 0.56
LIMS1-215ENST00000544547 WDR43Q15061 677 aaKnown RBP eCLIP18.57■□□□□ 0.56
LIMS1-215ENST00000544547 RGL3Q3MIN7 710 aa18.57■□□□□ 0.56
LIMS1-215ENST00000544547 PRKRIP1Q9H875 184 aaPredicted RBP18.57■□□□□ 0.56
LIMS1-215ENST00000544547 RCAN3Q9UKA8 241 aa18.57■□□□□ 0.56
LIMS1-215ENST00000544547 RRBP1Q9P2E9 1410 aaKnown RBP18.57■□□□□ 0.56
LIMS1-215ENST00000544547 MPHOSPH9Q99550 1183 aa18.57■□□□□ 0.56
LIMS1-215ENST00000544547 GZF1Q9H116 711 aaPredicted RBP18.57■□□□□ 0.56
LIMS1-215ENST00000544547 EXOC6Q8TAG9 804 aa18.56■□□□□ 0.56
LIMS1-215ENST00000544547 CFDP1Q9UEE9 299 aaPredicted RBP18.55■□□□□ 0.56
LIMS1-215ENST00000544547 STAG3Q9UJ98 1225 aa18.55■□□□□ 0.56
LIMS1-215ENST00000544547 PRXQ9BXM0 1461 aa18.54■□□□□ 0.56
LIMS1-215ENST00000544547 TSPY4P0CV99 314 aa18.54■□□□□ 0.56
LIMS1-215ENST00000544547 TSPY10P0CW01 314 aa18.54■□□□□ 0.56
LIMS1-215ENST00000544547 ZBED9Q6R2W3 1325 aa18.54■□□□□ 0.56
LIMS1-215ENST00000544547 CARD11Q9BXL7 1154 aa18.53■□□□□ 0.56
LIMS1-215ENST00000544547 PNNQ9H307 717 aaKnown RBP18.53■□□□□ 0.56
LIMS1-215ENST00000544547 CADPSQ9ULU8 1353 aa18.52■□□□□ 0.56
LIMS1-215ENST00000544547 NPM1P06748 294 aaKnown RBP eCLIP18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms