RNA–Protein interactions for RNA: ENST00000542133.5

NPIPB4-215, Transcript of nuclear pore complex interacting protein family member B4, human

TSL 3

Gene NPIPB4, Length 910 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NPIPB4-215	ENST00000542133	MAPK8IP2	Q13387	824 aa	Predicted RBP	14.38	□□□□□ -0.11
NPIPB4-215	ENST00000542133	NUP160	Q12769	1436 aa		14.38	□□□□□ -0.11
NPIPB4-215	ENST00000542133	SCAF1	Q9H7N4	1312 aa	Known RBP	14.38	□□□□□ -0.11
NPIPB4-215	ENST00000542133	ADAMTS12	P58397	1594 aa		14.37	□□□□□ -0.11
NPIPB4-215	ENST00000542133	ABCA10	Q8WWZ4	1543 aa		14.36	□□□□□ -0.11
NPIPB4-215	ENST00000542133	KDM4F	A0A1W2PPD8	638 aa		14.34	□□□□□ -0.11
NPIPB4-215	ENST00000542133	ABCC10	Q5T3U5	1492 aa		14.32	□□□□□ -0.12
NPIPB4-215	ENST00000542133	DIP2B	Q9P265	1576 aa		14.31	□□□□□ -0.12
NPIPB4-215	ENST00000542133	KDM6B	O15054	1643 aa		14.31	□□□□□ -0.12
NPIPB4-215	ENST00000542133	MAPKBP1	O60336	1514 aa		14.3	□□□□□ -0.12
NPIPB4-215	ENST00000542133	FAM69C	Q0P6D2	419 aa		14.26	□□□□□ -0.13
NPIPB4-215	ENST00000542133	PRG4	Q92954	1404 aa	Predicted RBP	14.24	□□□□□ -0.13
NPIPB4-215	ENST00000542133	DMRT2	Q9Y5R5	561 aa		14.24	□□□□□ -0.13
NPIPB4-215	ENST00000542133	FHAD1	B1AJZ9	1412 aa		14.24	□□□□□ -0.13
NPIPB4-215	ENST00000542133	ADCY10	Q96PN6	1610 aa		14.21	□□□□□ -0.13
NPIPB4-215	ENST00000542133	RUSC2	Q8N2Y8	1516 aa		14.19	□□□□□ -0.14
NPIPB4-215	ENST00000542133	TSPOAP1	O95153	1857 aa		14.18	□□□□□ -0.14
NPIPB4-215	ENST00000542133	ERICH3	Q5RHP9	1530 aa		14.18	□□□□□ -0.14
NPIPB4-215	ENST00000542133	WRN	Q14191	1432 aa	Predicted RBP eCLIP	14.16	□□□□□ -0.14
NPIPB4-215	ENST00000542133	ADGRL1	O94910	1474 aa		14.16	□□□□□ -0.14
NPIPB4-215	ENST00000542133	HECW2	Q9P2P5	1572 aa		14.15	□□□□□ -0.14
NPIPB4-215	ENST00000542133	SLC24A1	O60721	1099 aa		14.14	□□□□□ -0.15
NPIPB4-215	ENST00000542133	NPM1	P06748	294 aa	Known RBP eCLIP	14.14	□□□□□ -0.15
NPIPB4-215	ENST00000542133	JPH4	Q96JJ6	628 aa		14.13	□□□□□ -0.15
NPIPB4-215	ENST00000542133	BIVM-ERCC5	R4GMW8	1640 aa		14.12	□□□□□ -0.15
NPIPB4-215	ENST00000542133	PPP4R3CP	Q6ZMV5	832 aa		14.1	□□□□□ -0.15
NPIPB4-215	ENST00000542133	TOP2B	Q02880	1626 aa		14.1	□□□□□ -0.15
NPIPB4-215	ENST00000542133	PPRC1	Q5VV67	1664 aa	Known RBP	14.09	□□□□□ -0.15
NPIPB4-215	ENST00000542133	GLI2	P10070	1586 aa		14.02	□□□□□ -0.16
NPIPB4-215	ENST00000542133	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.99	□□□□□ -0.17
NPIPB4-215	ENST00000542133	ABCC2	Q92887	1545 aa		13.98	□□□□□ -0.17
NPIPB4-215	ENST00000542133	KIAA0586	Q9BVV6	1533 aa		13.98	□□□□□ -0.17
NPIPB4-215	ENST00000542133	ASXL2	Q76L83	1435 aa		13.97	□□□□□ -0.17
NPIPB4-215	ENST00000542133	PLB1	Q6P1J6	1458 aa		13.96	□□□□□ -0.17
NPIPB4-215	ENST00000542133	MAP3K4	Q9Y6R4	1608 aa		13.95	□□□□□ -0.18
NPIPB4-215	ENST00000542133	FBXO41	Q8TF61	875 aa		13.95	□□□□□ -0.18
NPIPB4-215	ENST00000542133	CUL7	Q14999	1698 aa		13.94	□□□□□ -0.18
NPIPB4-215	ENST00000542133	PTPRG	P23470	1445 aa		13.92	□□□□□ -0.18
NPIPB4-215	ENST00000542133	TEX14	Q8IWB6	1497 aa		13.9	□□□□□ -0.18
NPIPB4-215	ENST00000542133	EPRS	P07814	1512 aa	Known RBP	13.9	□□□□□ -0.19
NPIPB4-215	ENST00000542133	UHRF1BP1L	A0JNW5	1464 aa		13.89	□□□□□ -0.19
NPIPB4-215	ENST00000542133	TNIK	Q9UKE5	1360 aa		13.87	□□□□□ -0.19
NPIPB4-215	ENST00000542133	TTBK1	Q5TCY1	1321 aa	Predicted RBP	13.84	□□□□□ -0.19
NPIPB4-215	ENST00000542133	KDM5B	Q9UGL1	1544 aa		13.84	□□□□□ -0.19
NPIPB4-215	ENST00000542133	CARMIL2	Q6F5E8	1435 aa		13.83	□□□□□ -0.2
NPIPB4-215	ENST00000542133	ZCCHC11	Q5TAX3	1644 aa	Known RBP	13.82	□□□□□ -0.2
NPIPB4-215	ENST00000542133	UACA	Q9BZF9	1416 aa		13.82	□□□□□ -0.2
NPIPB4-215	ENST00000542133	DCAF8L1	A6NGE4	600 aa		13.82	□□□□□ -0.2
NPIPB4-215	ENST00000542133	CNKSR2	Q8WXI2	1034 aa		13.81	□□□□□ -0.2
NPIPB4-215	ENST00000542133	KIF21B	O75037	1637 aa		13.81	□□□□□ -0.2
NPIPB4-215	ENST00000542133	IGF1R	P08069	1367 aa		13.81	□□□□□ -0.2
NPIPB4-215	ENST00000542133	IQGAP2	Q13576	1575 aa		13.8	□□□□□ -0.2
NPIPB4-215	ENST00000542133	DISP1	Q96F81	1524 aa		13.78	□□□□□ -0.2
NPIPB4-215	ENST00000542133	LMTK3	Q96Q04	1460 aa		13.77	□□□□□ -0.21
NPIPB4-215	ENST00000542133	WDR7	Q9Y4E6	1490 aa		13.76	□□□□□ -0.21
NPIPB4-215	ENST00000542133	KIF27	Q86VH2	1401 aa		13.76	□□□□□ -0.21
NPIPB4-215	ENST00000542133	CFAP43	Q8NDM7	1665 aa		13.75	□□□□□ -0.21
NPIPB4-215	ENST00000542133	MAGI3	Q5TCQ9	1506 aa		13.74	□□□□□ -0.21
NPIPB4-215	ENST00000542133	HOXD11	P31277	338 aa	Predicted RBP	13.72	□□□□□ -0.21
NPIPB4-215	ENST00000542133	PTPRM	P28827	1452 aa		13.72	□□□□□ -0.21
NPIPB4-215	ENST00000542133	ADAMTSL3	P82987	1691 aa		13.72	□□□□□ -0.21
NPIPB4-215	ENST00000542133	KIAA0556	O60303	1618 aa		13.71	□□□□□ -0.22
NPIPB4-215	ENST00000542133	PCF11	O94913	1555 aa	Known RBP	13.71	□□□□□ -0.22
NPIPB4-215	ENST00000542133	CARMIL1	Q5VZK9	1371 aa		13.7	□□□□□ -0.22
NPIPB4-215	ENST00000542133	CD109	Q6YHK3	1445 aa		13.69	□□□□□ -0.22
NPIPB4-215	ENST00000542133	UGGT2	Q9NYU1	1516 aa		13.69	□□□□□ -0.22
NPIPB4-215	ENST00000542133	SUPT5H	O00267	1087 aa	Known RBP	13.68	□□□□□ -0.22
NPIPB4-215	ENST00000542133	RNF216	Q9NWF9	866 aa	Predicted RBP	13.66	□□□□□ -0.22
NPIPB4-215	ENST00000542133	ARAP3	Q8WWN8	1544 aa		13.64	□□□□□ -0.23
NPIPB4-215	ENST00000542133	MADD	Q8WXG6	1647 aa		13.64	□□□□□ -0.23
NPIPB4-215	ENST00000542133	BCORL1	Q5H9F3	1711 aa		13.63	□□□□□ -0.23
NPIPB4-215	ENST00000542133	SOCS7	O14512	581 aa		13.61	□□□□□ -0.23
NPIPB4-215	ENST00000542133	ABCA8	O94911	1581 aa		13.6	□□□□□ -0.23
NPIPB4-215	ENST00000542133	NCBP3	Q53F19	620 aa	Known RBP	13.6	□□□□□ -0.23
NPIPB4-215	ENST00000542133	ILDR2	Q71H61	639 aa		13.6	□□□□□ -0.23
NPIPB4-215	ENST00000542133	DISP3	Q9P2K9	1392 aa		13.57	□□□□□ -0.24
NPIPB4-215	ENST00000542133	RIMS1	Q86UR5	1692 aa	Known RBP	13.56	□□□□□ -0.24
NPIPB4-215	ENST00000542133	KCNH8	Q96L42	1107 aa		13.56	□□□□□ -0.24
NPIPB4-215	ENST00000542133	FRMPD1	Q5SYB0	1578 aa		13.56	□□□□□ -0.24
NPIPB4-215	ENST00000542133	RAPGEF2	Q9Y4G8	1499 aa		13.55	□□□□□ -0.24
NPIPB4-215	ENST00000542133	CERK	Q8TCT0	537 aa		13.54	□□□□□ -0.24
NPIPB4-215	ENST00000542133	ABCA9	Q8IUA7	1624 aa		13.53	□□□□□ -0.24
NPIPB4-215	ENST00000542133	ARHGEF40	Q8TER5	1519 aa		13.53	□□□□□ -0.24
NPIPB4-215	ENST00000542133	SPATA31D1	Q6ZQQ2	1576 aa		13.53	□□□□□ -0.24
NPIPB4-215	ENST00000542133	CTTNBP2	Q8WZ74	1663 aa		13.53	□□□□□ -0.24
NPIPB4-215	ENST00000542133	PHLDB1	Q86UU1	1377 aa		13.52	□□□□□ -0.25
NPIPB4-215	ENST00000542133	HSPA2	P54652	639 aa		13.51	□□□□□ -0.25
NPIPB4-215	ENST00000542133	GOLGA3	Q08378	1498 aa		13.5	□□□□□ -0.25
NPIPB4-215	ENST00000542133	NEO1	Q92859	1461 aa		13.5	□□□□□ -0.25
NPIPB4-215	ENST00000542133	RAPGEF3	O95398	923 aa		13.49	□□□□□ -0.25
NPIPB4-215	ENST00000542133	CACNB1	Q02641	598 aa	Predicted RBP	13.49	□□□□□ -0.25
NPIPB4-215	ENST00000542133	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.48	□□□□□ -0.25
NPIPB4-215	ENST00000542133	RICTOR	Q6R327	1708 aa		13.44	□□□□□ -0.26
NPIPB4-215	ENST00000542133	SIGLEC1	Q9BZZ2	1709 aa		13.44	□□□□□ -0.26
NPIPB4-215	ENST00000542133	ATP10B	O94823	1461 aa		13.43	□□□□□ -0.26
NPIPB4-215	ENST00000542133	TTC37	Q6PGP7	1564 aa		13.42	□□□□□ -0.26
NPIPB4-215	ENST00000542133	FANCA	O15360	1455 aa		13.42	□□□□□ -0.26
NPIPB4-215	ENST00000542133	FER1L4	A9Z1Z3	1794 aa		13.4	□□□□□ -0.26
NPIPB4-215	ENST00000542133	ARID3C	A6NKF2	412 aa		13.4	□□□□□ -0.26
NPIPB4-215	ENST00000542133	PREX1	Q8TCU6	1659 aa		13.4	□□□□□ -0.26

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