RNA–Protein interactions for RNA: ENST00000541366.1

COPA-205, Transcript of coatomer protein complex subunit alpha, humanhuman

TSL 2

Gene COPA, Length 616 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPA-205ENST00000541366 ERICH3Q5RHP9 1530 aa21.39■■□□□ 1.02
COPA-205ENST00000541366 FAM69CQ0P6D2 419 aa21.39■■□□□ 1.01
COPA-205ENST00000541366 ABCC10Q5T3U5 1492 aa21.33■■□□□ 1.01
COPA-205ENST00000541366 RUSC2Q8N2Y8 1516 aa21.29■■□□□ 1
COPA-205ENST00000541366 NPM1P06748 294 aaKnown RBP eCLIP21.28■■□□□ 1
COPA-205ENST00000541366 DIP2BQ9P265 1576 aa21.27■■□□□ 1
COPA-205ENST00000541366 ADCY10Q96PN6 1610 aa21.26■□□□□ 0.99
COPA-205ENST00000541366 KDM4FA0A1W2PPD8 638 aa21.26■□□□□ 0.99
COPA-205ENST00000541366 MAPKBP1O60336 1514 aa21.25■□□□□ 0.99
COPA-205ENST00000541366 TSPOAP1O95153 1857 aa21.21■□□□□ 0.99
COPA-205ENST00000541366 KDM6BO15054 1643 aa21.19■□□□□ 0.98
COPA-205ENST00000541366 PHF23Q9BUL5 403 aaPredicted RBP21.16■□□□□ 0.98
COPA-205ENST00000541366 SENP3Q9H4L4 574 aaPredicted RBP21.14■□□□□ 0.97
COPA-205ENST00000541366 TTBK1Q5TCY1 1321 aaPredicted RBP21.12■□□□□ 0.97
COPA-205ENST00000541366 KIAA0586Q9BVV6 1533 aa21.12■□□□□ 0.97
COPA-205ENST00000541366 IGF1RP08069 1367 aa21.1■□□□□ 0.97
COPA-205ENST00000541366 ILDR1Q86SU0 546 aaPredicted RBP21.08■□□□□ 0.97
COPA-205ENST00000541366 PTPRGP23470 1445 aa21.04■□□□□ 0.96
COPA-205ENST00000541366 CUL7Q14999 1698 aa20.99■□□□□ 0.95
COPA-205ENST00000541366 KIF27Q86VH2 1401 aa20.98■□□□□ 0.95
COPA-205ENST00000541366 PPRC1Q5VV67 1664 aaKnown RBP20.98■□□□□ 0.95
COPA-205ENST00000541366 ASXL2Q76L83 1435 aa20.97■□□□□ 0.95
COPA-205ENST00000541366 ABCC2Q92887 1545 aa20.97■□□□□ 0.95
COPA-205ENST00000541366 TNIKQ9UKE5 1360 aa20.95■□□□□ 0.94
COPA-205ENST00000541366 ADGRL1O94910 1474 aa20.94■□□□□ 0.94
COPA-205ENST00000541366 CARMIL1Q5VZK9 1371 aa20.93■□□□□ 0.94
COPA-205ENST00000541366 COL17A1Q9UMD9 1497 aaPredicted RBP20.93■□□□□ 0.94
COPA-205ENST00000541366 PLB1Q6P1J6 1458 aa20.92■□□□□ 0.94
COPA-205ENST00000541366 GLI2P10070 1586 aa20.91■□□□□ 0.94
COPA-205ENST00000541366 CARMIL2Q6F5E8 1435 aa20.91■□□□□ 0.94
COPA-205ENST00000541366 IQGAP2Q13576 1575 aa20.86■□□□□ 0.93
COPA-205ENST00000541366 UACAQ9BZF9 1416 aa20.86■□□□□ 0.93
COPA-205ENST00000541366 UHRF1BP1LA0JNW5 1464 aa20.85■□□□□ 0.93
COPA-205ENST00000541366 EPRSP07814 1512 aaKnown RBP20.83■□□□□ 0.93
COPA-205ENST00000541366 DISP1Q96F81 1524 aa20.83■□□□□ 0.93
COPA-205ENST00000541366 MAP3K4Q9Y6R4 1608 aa20.8■□□□□ 0.92
COPA-205ENST00000541366 HECW2Q9P2P5 1572 aa20.8■□□□□ 0.92
COPA-205ENST00000541366 KDM5BQ9UGL1 1544 aa20.78■□□□□ 0.92
COPA-205ENST00000541366 ZCCHC11Q5TAX3 1644 aaKnown RBP20.76■□□□□ 0.91
COPA-205ENST00000541366 TEX14Q8IWB6 1497 aa20.73■□□□□ 0.91
COPA-205ENST00000541366 UGGT2Q9NYU1 1516 aa20.71■□□□□ 0.91
COPA-205ENST00000541366 KIAA0556O60303 1618 aa20.69■□□□□ 0.9
COPA-205ENST00000541366 WDR7Q9Y4E6 1490 aa20.67■□□□□ 0.9
COPA-205ENST00000541366 RAPGEF2Q9Y4G8 1499 aa20.66■□□□□ 0.9
COPA-205ENST00000541366 KCNH8Q96L42 1107 aa20.63■□□□□ 0.89
COPA-205ENST00000541366 CD109Q6YHK3 1445 aa20.61■□□□□ 0.89
COPA-205ENST00000541366 MAGI3Q5TCQ9 1506 aa20.57■□□□□ 0.88
COPA-205ENST00000541366 CFAP43Q8NDM7 1665 aa20.55■□□□□ 0.88
COPA-205ENST00000541366 KIF21BO75037 1637 aa20.55■□□□□ 0.88
COPA-205ENST00000541366 ABCA8O94911 1581 aa20.53■□□□□ 0.88
COPA-205ENST00000541366 ARID3CA6NKF2 412 aa20.51■□□□□ 0.87
COPA-205ENST00000541366 CTTNBP2Q8WZ74 1663 aa20.5■□□□□ 0.87
COPA-205ENST00000541366 GOLGA3Q08378 1498 aa20.46■□□□□ 0.87
COPA-205ENST00000541366 FBXO41Q8TF61 875 aa20.45■□□□□ 0.86
COPA-205ENST00000541366 ARAP3Q8WWN8 1544 aa20.43■□□□□ 0.86
COPA-205ENST00000541366 P3H3Q8IVL6 736 aa20.41■□□□□ 0.86
COPA-205ENST00000541366 RAPGEF3O95398 923 aa20.4■□□□□ 0.86
COPA-205ENST00000541366 PTPRMP28827 1452 aa20.4■□□□□ 0.86
COPA-205ENST00000541366 ATP10BO94823 1461 aa20.38■□□□□ 0.85
COPA-205ENST00000541366 ADAMTSL3P82987 1691 aa20.38■□□□□ 0.85
COPA-205ENST00000541366 PRXQ9BXM0 1461 aa20.35■□□□□ 0.85
COPA-205ENST00000541366 ABCA9Q8IUA7 1624 aa20.33■□□□□ 0.84
COPA-205ENST00000541366 ARID4BQ4LE39 1312 aaPredicted RBP20.3■□□□□ 0.84
COPA-205ENST00000541366 MADDQ8WXG6 1647 aa20.3■□□□□ 0.84
COPA-205ENST00000541366 BCORL1Q5H9F3 1711 aa20.29■□□□□ 0.84
COPA-205ENST00000541366 FRMPD1Q5SYB0 1578 aa20.29■□□□□ 0.84
COPA-205ENST00000541366 PHLDB1Q86UU1 1377 aa20.28■□□□□ 0.84
COPA-205ENST00000541366 PCF11O94913 1555 aaKnown RBP20.27■□□□□ 0.84
COPA-205ENST00000541366 LMTK3Q96Q04 1460 aa20.26■□□□□ 0.83
COPA-205ENST00000541366 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.26■□□□□ 0.83
COPA-205ENST00000541366 HNRNPUL2Q1KMD3 747 aaKnown RBP20.26■□□□□ 0.83
COPA-205ENST00000541366 NEO1Q92859 1461 aa20.25■□□□□ 0.83
COPA-205ENST00000541366 FAM9AQ8IZU1 332 aaPredicted RBP20.23■□□□□ 0.83
COPA-205ENST00000541366 HSPA2P54652 639 aa20.22■□□□□ 0.83
COPA-205ENST00000541366 PLPPR3Q6T4P5 718 aa20.22■□□□□ 0.83
COPA-205ENST00000541366 RAPGEF6Q8TEU7 1601 aa20.21■□□□□ 0.83
COPA-205ENST00000541366 RIMS1Q86UR5 1692 aaKnown RBP20.21■□□□□ 0.83
COPA-205ENST00000541366 SAMD9Q5K651 1589 aa20.2■□□□□ 0.82
COPA-205ENST00000541366 RANGAP1P46060 587 aaPredicted RBP20.18■□□□□ 0.82
COPA-205ENST00000541366 NUP153P49790 1475 aaKnown RBP20.18■□□□□ 0.82
COPA-205ENST00000541366 ARHGEF40Q8TER5 1519 aa20.17■□□□□ 0.82
COPA-205ENST00000541366 RICTORQ6R327 1708 aa20.14■□□□□ 0.81
COPA-205ENST00000541366 DENND4BO75064 1496 aaPredicted RBP20.14■□□□□ 0.81
COPA-205ENST00000541366 SIGLEC1Q9BZZ2 1709 aa20.13■□□□□ 0.81
COPA-205ENST00000541366 AKNAQ7Z591 1439 aa20.12■□□□□ 0.81
COPA-205ENST00000541366 FHOD3Q2V2M9 1422 aa20.11■□□□□ 0.81
COPA-205ENST00000541366 CSRNP3Q8WYN3 585 aa20.1■□□□□ 0.81
COPA-205ENST00000541366 YEATS2Q9ULM3 1422 aa20.1■□□□□ 0.81
COPA-205ENST00000541366 PLEKHD1A6NEE1 506 aa20.09■□□□□ 0.81
COPA-205ENST00000541366 MLECQ14165 292 aa20.09■□□□□ 0.81
COPA-205ENST00000541366 FANCAO15360 1455 aa20.09■□□□□ 0.81
COPA-205ENST00000541366 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.07■□□□□ 0.8
COPA-205ENST00000541366 CERKQ8TCT0 537 aa20.06■□□□□ 0.8
COPA-205ENST00000541366 TTC37Q6PGP7 1564 aa20.05■□□□□ 0.8
COPA-205ENST00000541366 ZFYVE16Q7Z3T8 1539 aa20.04■□□□□ 0.8
COPA-205ENST00000541366 POGZQ7Z3K3 1410 aa20.03■□□□□ 0.8
COPA-205ENST00000541366 ZMYM4Q5VZL5 1548 aa20.03■□□□□ 0.8
COPA-205ENST00000541366 CFAP74Q9C0B2 1584 aa20.01■□□□□ 0.79
COPA-205ENST00000541366 HECW1Q76N89 1606 aa20■□□□□ 0.79
COPA-205ENST00000541366 EFCAB5A4FU69 1503 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms