RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	FAM9B	Q8IZU0	186 aa		11.67	□□□□□ -0.54
YBX3-208	ENST00000540447	TNNT3	P45378	269 aa	Predicted RBP	11.64	□□□□□ -0.55
YBX3-208	ENST00000540447	GOLGA6L22	H0YM25	854 aa		11.64	□□□□□ -0.55
YBX3-208	ENST00000540447	FAM50A	Q14320	339 aa	Known RBP	11.63	□□□□□ -0.55
YBX3-208	ENST00000540447	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.63	□□□□□ -0.55
YBX3-208	ENST00000540447	MSN	P26038	577 aa	Known RBP	11.61	□□□□□ -0.55
YBX3-208	ENST00000540447	ARID3A	Q99856	593 aa		11.6	□□□□□ -0.55
YBX3-208	ENST00000540447	PPP4R2	Q9NY27	417 aa		11.59	□□□□□ -0.55
YBX3-208	ENST00000540447	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	11.59	□□□□□ -0.55
YBX3-208	ENST00000540447	TIMELESS	Q9UNS1	1208 aa		11.58	□□□□□ -0.56
YBX3-208	ENST00000540447	CHAF1A	Q13111	956 aa	Predicted RBP	11.54	□□□□□ -0.56
YBX3-208	ENST00000540447	SALL2	Q9Y467	1007 aa	Predicted RBP	11.51	□□□□□ -0.57
YBX3-208	ENST00000540447	PTMS	P20962	102 aa		11.5	□□□□□ -0.57
YBX3-208	ENST00000540447	MRS2	Q9HD23	443 aa		11.49	□□□□□ -0.57
YBX3-208	ENST00000540447	B4GALNT3	Q6L9W6	998 aa		11.46	□□□□□ -0.58
YBX3-208	ENST00000540447	TMC1	Q8TDI8	760 aa		11.45	□□□□□ -0.58
YBX3-208	ENST00000540447	APP	P05067	770 aa		11.44	□□□□□ -0.58
YBX3-208	ENST00000540447	PLCB2	Q00722	1185 aa		11.42	□□□□□ -0.58
YBX3-208	ENST00000540447	IPO9	Q96P70	1041 aa	Known RBP	11.42	□□□□□ -0.58
YBX3-208	ENST00000540447	USP35	Q9P2H5	1018 aa		11.41	□□□□□ -0.58
YBX3-208	ENST00000540447	TONSL	Q96HA7	1378 aa		11.41	□□□□□ -0.58
YBX3-208	ENST00000540447	CCDC180	Q9P1Z9	1646 aa		11.41	□□□□□ -0.58
YBX3-208	ENST00000540447	GOLGA6L3	A6NEY3	463 aa		11.4	□□□□□ -0.59
YBX3-208	ENST00000540447	CALR	P27797	417 aa	Known RBP	11.39	□□□□□ -0.59
YBX3-208	ENST00000540447	UBE2Q2	Q8WVN8	375 aa		11.38	□□□□□ -0.59
YBX3-208	ENST00000540447	ZBTB7C	A1YPR0	619 aa		11.36	□□□□□ -0.59
YBX3-208	ENST00000540447	GSE1	Q14687	1217 aa		11.36	□□□□□ -0.59
YBX3-208	ENST00000540447	GZF1	Q9H116	711 aa	Predicted RBP	11.35	□□□□□ -0.59
YBX3-208	ENST00000540447	KIAA2012	Q0VF49	1180 aa		11.35	□□□□□ -0.59
YBX3-208	ENST00000540447	GOLGA6L6	A8MZA4	724 aa		11.35	□□□□□ -0.59
YBX3-208	ENST00000540447	ZNF771	Q7L3S4	317 aa	Predicted RBP	11.34	□□□□□ -0.59
YBX3-208	ENST00000540447	HSP90AB1	P08238	724 aa	Known RBP	11.33	□□□□□ -0.6
YBX3-208	ENST00000540447	FANCI	Q9NVI1	1328 aa		11.33	□□□□□ -0.6
YBX3-208	ENST00000540447	TPRN	Q4KMQ1	711 aa		11.33	□□□□□ -0.6
YBX3-208	ENST00000540447	RGS3	P49796	1198 aa		11.32	□□□□□ -0.6
YBX3-208	ENST00000540447	PDE4C	Q08493	712 aa		11.32	□□□□□ -0.6
YBX3-208	ENST00000540447	ZRSR1	Q15695	479 aa	Known RBP	11.32	□□□□□ -0.6
YBX3-208	ENST00000540447	NRDC	O43847	1150 aa		11.31	□□□□□ -0.6
YBX3-208	ENST00000540447	MYH16	Q9H6N6	1097 aa		11.3	□□□□□ -0.6
YBX3-208	ENST00000540447	HIRIP3	Q9BW71	556 aa	Predicted RBP	11.3	□□□□□ -0.6
YBX3-208	ENST00000540447	WDR43	Q15061	677 aa	Known RBP eCLIP	11.29	□□□□□ -0.6
YBX3-208	ENST00000540447	HSCB	Q8IWL3	235 aa		11.29	□□□□□ -0.6
YBX3-208	ENST00000540447	FAM13B	Q9NYF5	915 aa		11.28	□□□□□ -0.6
YBX3-208	ENST00000540447	SET	Q01105	290 aa	Predicted RBP	11.27	□□□□□ -0.61
YBX3-208	ENST00000540447	SPRYD3	Q8NCJ5	442 aa		11.27	□□□□□ -0.61
YBX3-208	ENST00000540447	IL27	Q8NEV9	243 aa		11.27	□□□□□ -0.61
YBX3-208	ENST00000540447	DRC7	Q8IY82	874 aa		11.26	□□□□□ -0.61
YBX3-208	ENST00000540447	GBP4	Q96PP9	640 aa		11.25	□□□□□ -0.61
YBX3-208	ENST00000540447	TCERG1	O14776	1098 aa	Known RBP	11.24	□□□□□ -0.61
YBX3-208	ENST00000540447	SLK	Q9H2G2	1235 aa	Predicted RBP	11.24	□□□□□ -0.61
YBX3-208	ENST00000540447	MAP7D2	Q96T17	732 aa		11.23	□□□□□ -0.61
YBX3-208	ENST00000540447	GOLGA6L1	Q8N7Z2	621 aa		11.22	□□□□□ -0.61
YBX3-208	ENST00000540447	CASC1	Q6TDU7	716 aa		11.2	□□□□□ -0.62
YBX3-208	ENST00000540447	MTERF4	Q7Z6M4	381 aa	Known RBP	11.19	□□□□□ -0.62
YBX3-208	ENST00000540447	RRP9	O43818	475 aa	Known RBP	11.19	□□□□□ -0.62
YBX3-208	ENST00000540447	SENP3-EIF4A1	A0A087X0R7	540 aa		11.19	□□□□□ -0.62
YBX3-208	ENST00000540447	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-208	ENST00000540447	FAM43A	Q8N2R8	423 aa		11.18	□□□□□ -0.62
YBX3-208	ENST00000540447	TPM2	P07951	284 aa		11.17	□□□□□ -0.62
YBX3-208	ENST00000540447	CCER2	I3L3R5	266 aa		11.16	□□□□□ -0.62
YBX3-208	ENST00000540447	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
YBX3-208	ENST00000540447	BRPF3	Q9ULD4	1205 aa		11.15	□□□□□ -0.62
YBX3-208	ENST00000540447	ZMYND15	Q9H091	742 aa		11.15	□□□□□ -0.62
YBX3-208	ENST00000540447	CCDC66	A2RUB6	948 aa		11.14	□□□□□ -0.63
YBX3-208	ENST00000540447	GOLGA6L4	A6NEF3	574 aa		11.13	□□□□□ -0.63
YBX3-208	ENST00000540447	CSPP1	Q1MSJ5	1256 aa		11.13	□□□□□ -0.63
YBX3-208	ENST00000540447	MYO15B	Q96JP2	1530 aa		11.12	□□□□□ -0.63
YBX3-208	ENST00000540447	NOM1	Q5C9Z4	860 aa	Known RBP	11.12	□□□□□ -0.63
YBX3-208	ENST00000540447	SYAP1	Q96A49	352 aa	Predicted RBP	11.12	□□□□□ -0.63
YBX3-208	ENST00000540447	TEX35	Q5T0J7	233 aa		11.11	□□□□□ -0.63
YBX3-208	ENST00000540447	CALD1	Q05682	793 aa	Known RBP	11.11	□□□□□ -0.63
YBX3-208	ENST00000540447	DDX11L8	A8MPP1	907 aa		11.1	□□□□□ -0.63
YBX3-208	ENST00000540447	HTATSF1	O43719	755 aa	Known RBP	11.1	□□□□□ -0.63
YBX3-208	ENST00000540447	NOC3L	Q8WTT2	800 aa	Known RBP	11.09	□□□□□ -0.63
YBX3-208	ENST00000540447	FTSJ3	Q8IY81	847 aa	Known RBP	11.09	□□□□□ -0.63
YBX3-208	ENST00000540447	R3HCC1	Q9Y3T6	440 aa	Known RBP	11.07	□□□□□ -0.64
YBX3-208	ENST00000540447	FRAT1	Q92837	279 aa	Predicted RBP	11.06	□□□□□ -0.64
YBX3-208	ENST00000540447	GPS2	Q13227	327 aa		11.06	□□□□□ -0.64
YBX3-208	ENST00000540447	SLC4A3	P48751	1232 aa		11.06	□□□□□ -0.64
YBX3-208	ENST00000540447	RBM10	P98175	930 aa	Known RBP	11.06	□□□□□ -0.64
YBX3-208	ENST00000540447	TAF3	Q5VWG9	929 aa		11.05	□□□□□ -0.64
YBX3-208	ENST00000540447	PATL2	C9JE40	543 aa	Known RBP	11.05	□□□□□ -0.64
YBX3-208	ENST00000540447	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.04	□□□□□ -0.64
YBX3-208	ENST00000540447	PDE4A	P27815	886 aa		11.04	□□□□□ -0.64
YBX3-208	ENST00000540447	SKOR2	Q2VWA4	1001 aa	Predicted RBP	11.04	□□□□□ -0.64
YBX3-208	ENST00000540447	PLEKHG5	O94827	1062 aa		11.03	□□□□□ -0.64
YBX3-208	ENST00000540447	NFKBIB	Q15653	356 aa		11.03	□□□□□ -0.64
YBX3-208	ENST00000540447	PDIA4	P13667	645 aa	Known RBP	11.02	□□□□□ -0.64
YBX3-208	ENST00000540447	BBX	Q8WY36	941 aa	Predicted RBP	11.02	□□□□□ -0.65
YBX3-208	ENST00000540447	CWC15	Q9P013	229 aa	Known RBP	11.02	□□□□□ -0.65
YBX3-208	ENST00000540447	PHF14	O94880	888 aa		11.01	□□□□□ -0.65
YBX3-208	ENST00000540447	AEBP1	Q8IUX7	1158 aa		11	□□□□□ -0.65
YBX3-208	ENST00000540447	HAP1	P54257	671 aa	Predicted RBP	10.99	□□□□□ -0.65
YBX3-208	ENST00000540447	DDX49	Q9Y6V7	483 aa	Known RBP	10.99	□□□□□ -0.65
YBX3-208	ENST00000540447	MRE11	P49959	708 aa		10.98	□□□□□ -0.65
YBX3-208	ENST00000540447	CFAP44	Q96MT7	982 aa		10.98	□□□□□ -0.65
YBX3-208	ENST00000540447	MS4A1	P11836	297 aa		10.98	□□□□□ -0.65
YBX3-208	ENST00000540447	RCAN3	Q9UKA8	241 aa		10.97	□□□□□ -0.65
YBX3-208	ENST00000540447	MCC	P23508	829 aa		10.97	□□□□□ -0.65
YBX3-208	ENST00000540447	RDX	P35241	583 aa	Known RBP	10.96	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms