RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 JPH4Q96JJ6 628 aa25■■□□□ 1.59
SMARCA4-206ENST00000538456 ADCY10Q96PN6 1610 aa24.88■■□□□ 1.57
SMARCA4-206ENST00000538456 FAM69CQ0P6D2 419 aa24.87■■□□□ 1.57
SMARCA4-206ENST00000538456 ABCC10Q5T3U5 1492 aa24.87■■□□□ 1.57
SMARCA4-206ENST00000538456 NPM1P06748 294 aaKnown RBP eCLIP24.86■■□□□ 1.57
SMARCA4-206ENST00000538456 MAPKBP1O60336 1514 aa24.86■■□□□ 1.57
SMARCA4-206ENST00000538456 DIP2BQ9P265 1576 aa24.84■■□□□ 1.57
SMARCA4-206ENST00000538456 KIAA0586Q9BVV6 1533 aa24.8■■□□□ 1.56
SMARCA4-206ENST00000538456 CUL7Q14999 1698 aa24.79■■□□□ 1.56
SMARCA4-206ENST00000538456 IGF1RP08069 1367 aa24.77■■□□□ 1.56
SMARCA4-206ENST00000538456 TSPOAP1O95153 1857 aa24.76■■□□□ 1.55
SMARCA4-206ENST00000538456 KIF27Q86VH2 1401 aa24.76■■□□□ 1.55
SMARCA4-206ENST00000538456 KDM6BO15054 1643 aa24.72■■□□□ 1.55
SMARCA4-206ENST00000538456 TTBK1Q5TCY1 1321 aaPredicted RBP24.68■■□□□ 1.54
SMARCA4-206ENST00000538456 PTPRGP23470 1445 aa24.63■■□□□ 1.53
SMARCA4-206ENST00000538456 CARMIL1Q5VZK9 1371 aa24.6■■□□□ 1.53
SMARCA4-206ENST00000538456 CARMIL2Q6F5E8 1435 aa24.57■■□□□ 1.52
SMARCA4-206ENST00000538456 IQGAP2Q13576 1575 aa24.57■■□□□ 1.52
SMARCA4-206ENST00000538456 TNIKQ9UKE5 1360 aa24.56■■□□□ 1.52
SMARCA4-206ENST00000538456 ABCC2Q92887 1545 aa24.56■■□□□ 1.52
SMARCA4-206ENST00000538456 KDM4FA0A1W2PPD8 638 aa24.55■■□□□ 1.52
SMARCA4-206ENST00000538456 ASXL2Q76L83 1435 aa24.52■■□□□ 1.52
SMARCA4-206ENST00000538456 PPRC1Q5VV67 1664 aaKnown RBP24.5■■□□□ 1.51
SMARCA4-206ENST00000538456 PLB1Q6P1J6 1458 aa24.48■■□□□ 1.51
SMARCA4-206ENST00000538456 GLI2P10070 1586 aa24.46■■□□□ 1.51
SMARCA4-206ENST00000538456 DISP1Q96F81 1524 aa24.45■■□□□ 1.51
SMARCA4-206ENST00000538456 UHRF1BP1LA0JNW5 1464 aa24.45■■□□□ 1.5
SMARCA4-206ENST00000538456 UACAQ9BZF9 1416 aa24.44■■□□□ 1.5
SMARCA4-206ENST00000538456 ZCCHC11Q5TAX3 1644 aaKnown RBP24.37■■□□□ 1.49
SMARCA4-206ENST00000538456 UGGT2Q9NYU1 1516 aa24.36■■□□□ 1.49
SMARCA4-206ENST00000538456 MAP3K4Q9Y6R4 1608 aa24.36■■□□□ 1.49
SMARCA4-206ENST00000538456 RAPGEF2Q9Y4G8 1499 aa24.36■■□□□ 1.49
SMARCA4-206ENST00000538456 EPRSP07814 1512 aaKnown RBP24.35■■□□□ 1.49
SMARCA4-206ENST00000538456 KDM5BQ9UGL1 1544 aa24.35■■□□□ 1.49
SMARCA4-206ENST00000538456 KIAA0556O60303 1618 aa24.35■■□□□ 1.49
SMARCA4-206ENST00000538456 ADGRL1O94910 1474 aa24.33■■□□□ 1.49
SMARCA4-206ENST00000538456 COL17A1Q9UMD9 1497 aaPredicted RBP24.31■■□□□ 1.48
SMARCA4-206ENST00000538456 TEX14Q8IWB6 1497 aa24.28■■□□□ 1.48
SMARCA4-206ENST00000538456 CTTNBP2Q8WZ74 1663 aa24.26■■□□□ 1.47
SMARCA4-206ENST00000538456 WDR7Q9Y4E6 1490 aa24.23■■□□□ 1.47
SMARCA4-206ENST00000538456 GOLGA3Q08378 1498 aa24.13■■□□□ 1.45
SMARCA4-206ENST00000538456 ILDR1Q86SU0 546 aaPredicted RBP24.13■■□□□ 1.45
SMARCA4-206ENST00000538456 CFAP43Q8NDM7 1665 aa24.13■■□□□ 1.45
SMARCA4-206ENST00000538456 ABCA8O94911 1581 aa24.12■■□□□ 1.45
SMARCA4-206ENST00000538456 HECW2Q9P2P5 1572 aa24.12■■□□□ 1.45
SMARCA4-206ENST00000538456 KCNH8Q96L42 1107 aa24.1■■□□□ 1.45
SMARCA4-206ENST00000538456 CD109Q6YHK3 1445 aa24.1■■□□□ 1.45
SMARCA4-206ENST00000538456 MAGI3Q5TCQ9 1506 aa24.08■■□□□ 1.45
SMARCA4-206ENST00000538456 PRXQ9BXM0 1461 aa24.02■■□□□ 1.44
SMARCA4-206ENST00000538456 ARID3CA6NKF2 412 aa24.01■■□□□ 1.43
SMARCA4-206ENST00000538456 KIF21BO75037 1637 aa24.01■■□□□ 1.43
SMARCA4-206ENST00000538456 P3H3Q8IVL6 736 aa23.95■■□□□ 1.42
SMARCA4-206ENST00000538456 ATP10BO94823 1461 aa23.91■■□□□ 1.42
SMARCA4-206ENST00000538456 ARAP3Q8WWN8 1544 aa23.89■■□□□ 1.42
SMARCA4-206ENST00000538456 FAM9AQ8IZU1 332 aaPredicted RBP23.89■■□□□ 1.41
SMARCA4-206ENST00000538456 ABCA9Q8IUA7 1624 aa23.88■■□□□ 1.41
SMARCA4-206ENST00000538456 SAMD9Q5K651 1589 aa23.85■■□□□ 1.41
SMARCA4-206ENST00000538456 RAPGEF6Q8TEU7 1601 aa23.84■■□□□ 1.41
SMARCA4-206ENST00000538456 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.78■■□□□ 1.4
SMARCA4-206ENST00000538456 RAPGEF3O95398 923 aa23.78■■□□□ 1.4
SMARCA4-206ENST00000538456 HNRNPUL2Q1KMD3 747 aaKnown RBP23.78■■□□□ 1.4
SMARCA4-206ENST00000538456 PHLDB1Q86UU1 1377 aa23.77■■□□□ 1.4
SMARCA4-206ENST00000538456 ADAMTSL3P82987 1691 aa23.76■■□□□ 1.39
SMARCA4-206ENST00000538456 FRMPD1Q5SYB0 1578 aa23.75■■□□□ 1.39
SMARCA4-206ENST00000538456 PTPRMP28827 1452 aa23.75■■□□□ 1.39
SMARCA4-206ENST00000538456 NEO1Q92859 1461 aa23.75■■□□□ 1.39
SMARCA4-206ENST00000538456 RANGAP1P46060 587 aaPredicted RBP23.74■■□□□ 1.39
SMARCA4-206ENST00000538456 CSRNP3Q8WYN3 585 aa23.74■■□□□ 1.39
SMARCA4-206ENST00000538456 NUP153P49790 1475 aaKnown RBP23.73■■□□□ 1.39
SMARCA4-206ENST00000538456 BCORL1Q5H9F3 1711 aa23.7■■□□□ 1.39
SMARCA4-206ENST00000538456 FHOD3Q2V2M9 1422 aa23.69■■□□□ 1.38
SMARCA4-206ENST00000538456 MADDQ8WXG6 1647 aa23.69■■□□□ 1.38
SMARCA4-206ENST00000538456 ARID4BQ4LE39 1312 aaPredicted RBP23.68■■□□□ 1.38
SMARCA4-206ENST00000538456 ARHGEF40Q8TER5 1519 aa23.64■■□□□ 1.37
SMARCA4-206ENST00000538456 RICTORQ6R327 1708 aa23.63■■□□□ 1.37
SMARCA4-206ENST00000538456 RIMS1Q86UR5 1692 aaKnown RBP23.61■■□□□ 1.37
SMARCA4-206ENST00000538456 DENND4BO75064 1496 aaPredicted RBP23.6■■□□□ 1.37
SMARCA4-206ENST00000538456 PCF11O94913 1555 aaKnown RBP23.6■■□□□ 1.37
SMARCA4-206ENST00000538456 PLEKHD1A6NEE1 506 aa23.59■■□□□ 1.37
SMARCA4-206ENST00000538456 CFAP74Q9C0B2 1584 aa23.59■■□□□ 1.37
SMARCA4-206ENST00000538456 TTC37Q6PGP7 1564 aa23.58■■□□□ 1.37
SMARCA4-206ENST00000538456 FANCAO15360 1455 aa23.58■■□□□ 1.37
SMARCA4-206ENST00000538456 FBXO41Q8TF61 875 aa23.58■■□□□ 1.37
SMARCA4-206ENST00000538456 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.58■■□□□ 1.361e-11■□□□□ 8.3
SMARCA4-206ENST00000538456 EEA1Q15075 1411 aa23.58■■□□□ 1.36
SMARCA4-206ENST00000538456 AKNAQ7Z591 1439 aa23.57■■□□□ 1.36
SMARCA4-206ENST00000538456 LMTK3Q96Q04 1460 aa23.56■■□□□ 1.36
SMARCA4-206ENST00000538456 EFCAB5A4FU69 1503 aa23.54■■□□□ 1.36
SMARCA4-206ENST00000538456 SIGLEC1Q9BZZ2 1709 aa23.51■■□□□ 1.35
SMARCA4-206ENST00000538456 CDK13Q14004 1512 aaKnown RBP23.51■■□□□ 1.35
SMARCA4-206ENST00000538456 PLPPR3Q6T4P5 718 aa23.51■■□□□ 1.35
SMARCA4-206ENST00000538456 ZMYM4Q5VZL5 1548 aa23.5■■□□□ 1.35
SMARCA4-206ENST00000538456 ZFYVE16Q7Z3T8 1539 aa23.5■■□□□ 1.35
SMARCA4-206ENST00000538456 YEATS2Q9ULM3 1422 aa23.48■■□□□ 1.35
SMARCA4-206ENST00000538456 POGZQ7Z3K3 1410 aa23.46■■□□□ 1.35
SMARCA4-206ENST00000538456 HECW1Q76N89 1606 aa23.44■■□□□ 1.34
SMARCA4-206ENST00000538456 FER1L4A9Z1Z3 1794 aa23.43■■□□□ 1.34
SMARCA4-206ENST00000538456 HSPA2P54652 639 aa23.43■■□□□ 1.34
SMARCA4-206ENST00000538456 MLECQ14165 292 aa23.42■■□□□ 1.34
SMARCA4-206ENST00000538456 EHMT2Q96KQ7 1210 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms